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Domain combinations for Elafin-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Elafin-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   49 33
Pan_troglodytes_76_2.1.4   (Chimpanzee)   21 13
Gorilla_gorilla_76_3.1   (Western gorilla)   22 14
Pongo_abelii_76_2   (Sumatran orangutan)   18 13
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   24 15
Papio_anubis_76   (Olive baboon)   29 20
Macaca_mulatta_76_1   (Rhesus monkey)   36 25
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   29 22
Otolemur_garnettii_76_3   (Small-eared galago)   20 12
Microcebus_murinus_76_1   (Gray mouse lemur)   20 14
Rattus_norvegicus_76_5.0   (Norway rat)   33 26
Mus_musculus_76_38   (House mouse)   44 34
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   17 12
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   19 12
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   15 11
Cavia_porcellus_76_3   (Domestic guinea pig)   19 13
Oryctolagus_cuniculus_76_2   (Rabbit)   15 10
Ochotona_princeps_76   (American pika)   18 10
Tupaia_belangeri_76   (Northern tree shrew)   15 10
Sus_scrofa_76_10.2   (Pig)   26 19
Bos_taurus_76_3.1   (Cattle)   37 26
Ovis_aries_76_3.1   (Sheep)   24 17
Vicugna_pacos_76_1   (Alpaca)   12 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   14 11
Mustela_putorius_furo_76_1.0   (Domestic ferret)   26 16
Ailuropoda_melanoleuca_76_1   (Giant panda)   25 16
Canis_familiaris_76_3.1   (Dog)   28 18
Felis_catus_76_6.2   (Domestic cat)   22 14
Equus_caballus_76_2   (Horse)   23 16
Myotis_lucifugus_76_2.0   (Little brown bat)   27 17
Pteropus_vampyrus_76_1   (Large flying fox)   19 13
Sorex_araneus_76_1   (European shrew)   13 8
Erinaceus_europaeus_76   (Western European hedgehog)   11 8
Procavia_capensis_76_1   (Cape rock hyrax)   12 9
Loxodonta_africana_76_3   (African savanna elephant)   23 18
Echinops_telfairi_76   (Small Madagascar hedgehog)   8 6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   35 26
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   18 11
Macropus_eugenii_76_1.0   (Tammar wallaby)   9 8
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   27 16
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   20 12
Ornithorhynchus_anatinus_76_5   (Platypus)   18 11
Saccoglossus_kowalevskii_v3.0 663 133
Petromyzon_marinus_76_7.0   (Sea lamprey)   11 5
Meleagris_gallopavo_76_2   (Turkey)   25 11
Gallus_gallus_76_4   (Chicken)   21 7
Anas_platyrhynchos_76_1.0   (Mallard)   12 8
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   10 6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   8 6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   26 12
Anolis_carolinensis_76_2.0   (Green anole)   41 24
Xenopus_laevis_   (African clawed frog)   6 2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   10 9
Latimeria_chalumnae_76_1   (Coelacanth)   7 5
Lepisosteus_oculatus_76   (Spotted gar)   9 7
Gadus_morhua_76_1   (Atlantic cod)   4 4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   9 9
Takifugu_rubripes_76_4   (Torafugu)   25 24
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   7 7
Oryzias_latipes_76_1   (Japanese medaka)   13 8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   7 7
Poecilia_formosa_76   (Amazon molly)   9 9
Oreochromis_niloticus_76_1.0   (Nile tilapia)   28 15
Astyanax_mexicanus_76   (Mexican tetra)   13 9
Danio_rerio_76_9   (Zebrafish)   12 10
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   44 15
Adineta_vaga 5 5
Octopus_bimaculoides_280 1 1
Crassostrea_gigas_22   (Pacific oyster)   23 17
Lottia_gigantea_   (Owl limpet)   38 17
Helobdella_robusta_ 2 2
Capitella_sp._I_ 9 8
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4 4
Heliconius_melpomene_   (Postman butterfly)   3 3
Bombyx_mori_   (Domestic silkworm)   3 3
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   7 6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   6 5
Linepithema_humile_v1.1   (Argentine ant)   5 4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   6 5
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   6 5
Atta_cephalotes_v1.1 6 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   7 6
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_grimshawi_1.3 4 4
Drosophila_willistoni_1.3 2 2
Drosophila_pseudoobscura_2.13 4 4
Drosophila_persimilis_1.3 3 3
Drosophila_suzukii 5 4
Drosophila_yakuba_1.3 3 3
Drosophila_simulans_1.3 3 3
Drosophila_sechellia_1.3 3 3
Drosophila_melanogaster_76_5   (Fruit fly)   5 5
Drosophila_erecta_1.3 3 3
Drosophila_ananassae_1.3 4 4
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 2 2
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   5 5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5 5
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 3
Tribolium_castaneum_3.0   (Red flour beetle)   3 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 4 4
Daphnia_pulex_   (Common water flea)   4 2
Strigamia_maritima_22 18 14
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Pristionchus_pacificus_ 3 2
Meloidogyne_incognita_   (Southern root-knot nematode)   2 2
Onchocerca_volvulus_22 6 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Caenorhabditis_japonica_ 10 4
Caenorhabditis_brenneri_ 2 2
Caenorhabditis_remanei_ 9 4
Caenorhabditis_elegans_76_235   (Roundworm)   7 4
Caenorhabditis_briggsae_2 7 4
Trichinella_spiralis_22 48 23
Mnemiopsis_leidyi   (Sea walnut)   3 1
Acropora_digitifera_v1.0 18 8
Nematostella_vectensis_1.0   (Starlet sea anemone)   16 7
Hydra_vulgaris 3 3
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 4 1
Proterospongia_sp._ATCC_50818_ 1 1
Hebeloma_cylindrosporum_h7_v2.0 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   21 15
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   5 5
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2 2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   8 3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6 3

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   26 16
Pan_troglodytes_69_2.1.4   (Chimpanzee)   21 13
Gorilla_gorilla_69_3.1   (Western gorilla)   21 13
Pongo_abelii_69_2   (Sumatran orangutan)   17 12
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   22 13
Macaca_mulatta_69_1   (Rhesus monkey)   23 15
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   21 14
Otolemur_garnettii_69_3   (Small-eared galago)   18 11
Microcebus_murinus_69_1   (Gray mouse lemur)   20 14
Rattus_norvegicus_69_3.4   (Norway rat)   28 22
Mus_musculus_69_38   (House mouse)   25 20
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   15 10
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   19 12
Cavia_porcellus_69_3   (Domestic guinea pig)   19 13
Oryctolagus_cuniculus_69_2   (Rabbit)   15 10
Ochotona_princeps_69   (American pika)   18 10
Tupaia_belangeri_69   (Northern tree shrew)   15 10
Sus_scrofa_69_10.2   (Pig)   20 14
Bos_taurus_69_3.1   (Cattle)   28 21
Vicugna_pacos_69_1   (Alpaca)   12 7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   12 9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   26 16
Ailuropoda_melanoleuca_69_1   (Giant panda)   24 15
Canis_familiaris_69_3.1   (Dog)   26 17
Felis_catus_69   (Domestic cat)   19 11
Equus_caballus_69_2   (Horse)   22 15
Myotis_lucifugus_69_2.0   (Little brown bat)   27 17
Pteropus_vampyrus_69_1   (Large flying fox)   17 11
Sorex_araneus_69_1   (European shrew)   13 8
Erinaceus_europaeus_69   (Western European hedgehog)   11 8
Procavia_capensis_69_1   (Cape rock hyrax)   12 9
Loxodonta_africana_69_3   (African savanna elephant)   21 16
Echinops_telfairi_69   (Small Madagascar hedgehog)   8 6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   15 10
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   16 9
Macropus_eugenii_69_1.0   (Tammar wallaby)   9 8
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   21 13
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   20 12
Ornithorhynchus_anatinus_69_5   (Platypus)   18 11
Petromyzon_marinus_69_7.0   (Sea lamprey)   8 4
Meleagris_gallopavo_69_2   (Turkey)   12 7
Gallus_gallus_69_2   (Chicken)   11 7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7 5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   21 9
Anolis_carolinensis_69_2.0   (Green anole)   20 12
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   8 7
Latimeria_chalumnae_69_1   (Coelacanth)   7 5
Gadus_morhua_69_1   (Atlantic cod)   4 4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   7 7
Takifugu_rubripes_69_4   (Torafugu)   10 9
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   6 6
Oryzias_latipes_69_1   (Japanese medaka)   12 7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   7 7
Oreochromis_niloticus_69_1.0   (Nile tilapia)   18 10
Danio_rerio_69_9   (Zebrafish)   10 8
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   2 2
Caenorhabditis_elegans_69_215   (Roundworm)   6 3

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   51 34
Homo_sapiens__(NCBI_version)   (Human)   31 20
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   25 20
Heliconius_numata__(Incomplete) 4 4
Loa_loa_v3.3_(Request)   (Eye worm)   7 4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Protein_Data_Bank_(all_PDB_sequenc) 27 27
TargetDB__(Targets) 10 9
STRING_v9.0.5_(STRING) 581 401
PDB_chains_(SCOP_1.75)_(PDB) 2 2
Uniprot_2018_03_genome 7573 4462
NCBI_2017_08_genome 8117 4887
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 22 22

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