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Domain combinations for BPTI-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a BPTI-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   88 64
Pan_troglodytes_76_2.1.4   (Chimpanzee)   23 16
Gorilla_gorilla_76_3.1   (Western gorilla)   36 26
Pongo_abelii_76_2   (Sumatran orangutan)   27 18
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   26 18
Papio_anubis_76   (Olive baboon)   28 20
Macaca_mulatta_76_1   (Rhesus monkey)   36 25
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   49 35
Otolemur_garnettii_76_3   (Small-eared galago)   23 14
Microcebus_murinus_76_1   (Gray mouse lemur)   19 15
Rattus_norvegicus_76_5.0   (Norway rat)   32 22
Mus_musculus_76_38   (House mouse)   58 38
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   21 12
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   33 20
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   25 17
Cavia_porcellus_76_3   (Domestic guinea pig)   34 23
Oryctolagus_cuniculus_76_2   (Rabbit)   24 17
Ochotona_princeps_76   (American pika)   22 16
Tupaia_belangeri_76   (Northern tree shrew)   18 14
Sus_scrofa_76_10.2   (Pig)   35 26
Bos_taurus_76_3.1   (Cattle)   38 31
Ovis_aries_76_3.1   (Sheep)   46 34
Vicugna_pacos_76_1   (Alpaca)   13 9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   22 14
Mustela_putorius_furo_76_1.0   (Domestic ferret)   23 16
Ailuropoda_melanoleuca_76_1   (Giant panda)   26 17
Canis_familiaris_76_3.1   (Dog)   38 26
Felis_catus_76_6.2   (Domestic cat)   25 17
Equus_caballus_76_2   (Horse)   32 23
Myotis_lucifugus_76_2.0   (Little brown bat)   40 23
Pteropus_vampyrus_76_1   (Large flying fox)   24 17
Sorex_araneus_76_1   (European shrew)   32 25
Erinaceus_europaeus_76   (Western European hedgehog)   28 21
Procavia_capensis_76_1   (Cape rock hyrax)   22 14
Loxodonta_africana_76_3   (African savanna elephant)   28 19
Echinops_telfairi_76   (Small Madagascar hedgehog)   20 14
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   32 20
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   14 11
Macropus_eugenii_76_1.0   (Tammar wallaby)   24 16
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   31 23
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   23 15
Ornithorhynchus_anatinus_76_5   (Platypus)   24 13
Saccoglossus_kowalevskii_v3.0 104 52
Petromyzon_marinus_76_7.0   (Sea lamprey)   20 9
Meleagris_gallopavo_76_2   (Turkey)   23 16
Gallus_gallus_76_4   (Chicken)   21 13
Anas_platyrhynchos_76_1.0   (Mallard)   19 13
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   22 14
Ficedula_albicollis_76_1.0   (Collared flycatcher)   25 16
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   29 15
Anolis_carolinensis_76_2.0   (Green anole)   63 35
Xenopus_laevis_   (African clawed frog)   30 17
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   24 15
Latimeria_chalumnae_76_1   (Coelacanth)   22 14
Lepisosteus_oculatus_76   (Spotted gar)   41 24
Gadus_morhua_76_1   (Atlantic cod)   27 18
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   39 26
Takifugu_rubripes_76_4   (Torafugu)   98 59
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   51 29
Oryzias_latipes_76_1   (Japanese medaka)   34 21
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   31 19
Poecilia_formosa_76   (Amazon molly)   37 25
Oreochromis_niloticus_76_1.0   (Nile tilapia)   40 25
Astyanax_mexicanus_76   (Mexican tetra)   48 30
Danio_rerio_76_9   (Zebrafish)   54 35
Oikopleura_dioica 7 5
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   9 5
Ciona_intestinalis_76   (Vase tunicate)   14 7
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   16 8
Adineta_vaga 37 22
Octopus_bimaculoides_280 31 11
Crassostrea_gigas_22   (Pacific oyster)   51 27
Lottia_gigantea_   (Owl limpet)   48 27
Helobdella_robusta_ 18 8
Capitella_sp._I_ 72 38
Danaus_plexippus_OGS1.0   (Monarch butterfly)   27 12
Heliconius_melpomene_   (Postman butterfly)   18 8
Bombyx_mori_   (Domestic silkworm)   17 7
Nasonia_vitripennis_   (Jewel wasp)   15 6
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   52 15
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   17 7
Linepithema_humile_v1.1   (Argentine ant)   12 6
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   8 7
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   16 6
Atta_cephalotes_v1.1 11 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   15 5
Lucilia_cuprina   (Australian sheep blowfly)   66 30
Drosophila_grimshawi_1.3 45 34
Drosophila_willistoni_1.3 36 24
Drosophila_pseudoobscura_2.13 60 39
Drosophila_persimilis_1.3 43 32
Drosophila_suzukii 57 34
Drosophila_yakuba_1.3 39 28
Drosophila_simulans_1.3 40 28
Drosophila_sechellia_1.3 39 26
Drosophila_melanogaster_76_5   (Fruit fly)   90 58
Drosophila_erecta_1.3 42 30
Drosophila_ananassae_1.3 43 31
Drosophila_virilis_1.2 39 28
Drosophila_mojavensis_1.3 39 28
Megaselia_scalaris_22 10 10
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   14 5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   14 5
Anopheles_darlingi_22   (American malaria mosquito)   10 4
Anopheles_gambiae_49_3j   (African malaria mosquito)   8 6
Tribolium_castaneum_3.0   (Red flour beetle)   18 6
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   17 4
Acyrthosiphon_pisum_   (Pea aphid)   11 3
Rhodnius_prolixus_22 12 3
Daphnia_pulex_   (Common water flea)   68 30
Strigamia_maritima_22 31 7
Sarcoptes_scabiei 11 2
Tetranychus_urticae_   (Two-spotted spider mite)   7 6
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   138 90
Pristionchus_pacificus_ 80 30
Meloidogyne_incognita_   (Southern root-knot nematode)   101 33
Meloidogyne_hapla_ 43 17
Onchocerca_volvulus_22 70 16
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   167 29
Caenorhabditis_japonica_ 131 42
Caenorhabditis_brenneri_ 150 49
Caenorhabditis_remanei_ 144 48
Caenorhabditis_elegans_76_235   (Roundworm)   510 78
Caenorhabditis_briggsae_2 138 44
Trichinella_spiralis_22 92 20
Hymenolepis_microstoma_ 51 16
Echinococcus_multilocularis_ 44 21
Echinococcus_granulosus_ 45 22
Taenia_solium_   (Pork tapeworm)   44 26
Schistosoma_mansoni_ 23 12
Thelohanellus_kitauei 28 24
Acropora_digitifera_v1.0 19 12
Nematostella_vectensis_1.0   (Starlet sea anemone)   24 24
Hydra_vulgaris 15 9
Amphimedon_queenslandica 21 13
Proterospongia_sp._ATCC_50818_ 7 7
Monosiga_brevicollis_ 2 2
Chlorella_variabilis_sp._NC64A_ 2 2
Volvox_carteri_f._nagariensis_ 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Runella_slithyformis_DSM_19594 1 1
Maribacter_sp._HTCC2170 1 1
Syntrophus_aciditrophicus_SB 1 1
Hippea_maritima_DSM_10411 1 1
Geobacter_lovleyi_SZ 1 1
Geobacter_metallireducens_GS-15 1 1
Pelobacter_propionicus_DSM_2379 1 1
Sorangium_cellulosum_'So_ce_56' 2 2
Rhodomicrobium_vannielii_ATCC_17100 1 1
Thiocystis_violascens_DSM_198 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   37 20
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   77 45
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   15 6
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   97 34
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   336 57
Sorangium_cellulosum_So0157-2 1 1
Thioflavicoccus_mobilis_8321 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   29 20
Pan_troglodytes_69_2.1.4   (Chimpanzee)   23 16
Gorilla_gorilla_69_3.1   (Western gorilla)   29 20
Pongo_abelii_69_2   (Sumatran orangutan)   27 18
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   25 17
Macaca_mulatta_69_1   (Rhesus monkey)   29 19
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   26 18
Otolemur_garnettii_69_3   (Small-eared galago)   23 14
Microcebus_murinus_69_1   (Gray mouse lemur)   19 15
Rattus_norvegicus_69_3.4   (Norway rat)   28 19
Mus_musculus_69_38   (House mouse)   29 20
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   21 12
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   24 15
Cavia_porcellus_69_3   (Domestic guinea pig)   33 22
Oryctolagus_cuniculus_69_2   (Rabbit)   22 16
Ochotona_princeps_69   (American pika)   22 16
Tupaia_belangeri_69   (Northern tree shrew)   18 14
Sus_scrofa_69_10.2   (Pig)   29 21
Bos_taurus_69_3.1   (Cattle)   32 25
Vicugna_pacos_69_1   (Alpaca)   13 9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   22 14
Mustela_putorius_furo_69_1.0   (Domestic ferret)   23 16
Ailuropoda_melanoleuca_69_1   (Giant panda)   25 16
Canis_familiaris_69_3.1   (Dog)   27 18
Felis_catus_69   (Domestic cat)   19 14
Equus_caballus_69_2   (Horse)   27 18
Myotis_lucifugus_69_2.0   (Little brown bat)   37 20
Pteropus_vampyrus_69_1   (Large flying fox)   24 17
Sorex_araneus_69_1   (European shrew)   32 25
Erinaceus_europaeus_69   (Western European hedgehog)   28 21
Procavia_capensis_69_1   (Cape rock hyrax)   22 14
Loxodonta_africana_69_3   (African savanna elephant)   26 17
Echinops_telfairi_69   (Small Madagascar hedgehog)   20 14
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   21 14
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   14 11
Macropus_eugenii_69_1.0   (Tammar wallaby)   24 16
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   28 20
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   23 15
Ornithorhynchus_anatinus_69_5   (Platypus)   22 12
Petromyzon_marinus_69_7.0   (Sea lamprey)   17 8
Meleagris_gallopavo_69_2   (Turkey)   21 14
Gallus_gallus_69_2   (Chicken)   22 14
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   21 13
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   26 13
Anolis_carolinensis_69_2.0   (Green anole)   54 30
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   21 13
Latimeria_chalumnae_69_1   (Coelacanth)   20 12
Gadus_morhua_69_1   (Atlantic cod)   27 18
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   31 19
Takifugu_rubripes_69_4   (Torafugu)   30 19
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   32 20
Oryzias_latipes_69_1   (Japanese medaka)   29 19
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   31 19
Oreochromis_niloticus_69_1.0   (Nile tilapia)   34 20
Danio_rerio_69_9   (Zebrafish)   40 25
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4 2
Ciona_intestinalis_69   (Vase tunicate)   14 7
Drosophila_melanogaster_69_5   (Fruit fly)   55 44
Caenorhabditis_elegans_69_215   (Roundworm)   141 38

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   98 73
Homo_sapiens__(NCBI_version)   (Human)   43 31
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   29 20
Loa_loa_v3.3_(Request)   (Eye worm)   76 22
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   67 39
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   55 12
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 839 838
STRING_v9.0.5_(STRING) 2017 1080
UniProt__viral_sequences_(Viral) 1 1
PDB_chains_(SCOP_1.75)_(PDB) 59 57
NCBI_2017_08_genome 19734 10885
Uniprot_2018_03_genome 31727 13818
TargetDB__(Targets) 69 32
NCBI_viral_sequences_(Viral) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 350 340

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