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Domain combinations for LDL receptor-like module superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a LDL receptor-like module domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   548 151
Pan_troglodytes_76_2.1.4   (Chimpanzee)   216 47
Gorilla_gorilla_76_3.1   (Western gorilla)   276 65
Pongo_abelii_76_2   (Sumatran orangutan)   204 46
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   205 51
Papio_anubis_76   (Olive baboon)   223 47
Macaca_mulatta_76_1   (Rhesus monkey)   283 70
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   461 115
Otolemur_garnettii_76_3   (Small-eared galago)   203 44
Microcebus_murinus_76_1   (Gray mouse lemur)   178 42
Rattus_norvegicus_76_5.0   (Norway rat)   208 49
Mus_musculus_76_38   (House mouse)   402 97
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   182 41
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   224 46
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   238 49
Cavia_porcellus_76_3   (Domestic guinea pig)   223 51
Oryctolagus_cuniculus_76_2   (Rabbit)   225 50
Ochotona_princeps_76   (American pika)   188 39
Tupaia_belangeri_76   (Northern tree shrew)   156 37
Sus_scrofa_76_10.2   (Pig)   167 58
Bos_taurus_76_3.1   (Cattle)   211 52
Ovis_aries_76_3.1   (Sheep)   271 58
Vicugna_pacos_76_1   (Alpaca)   117 23
Tursiops_truncatus_76_1   (Bottlenose dolphin)   196 45
Mustela_putorius_furo_76_1.0   (Domestic ferret)   233 47
Ailuropoda_melanoleuca_76_1   (Giant panda)   261 52
Canis_familiaris_76_3.1   (Dog)   374 66
Felis_catus_76_6.2   (Domestic cat)   246 53
Equus_caballus_76_2   (Horse)   321 60
Myotis_lucifugus_76_2.0   (Little brown bat)   187 45
Pteropus_vampyrus_76_1   (Large flying fox)   203 43
Sorex_araneus_76_1   (European shrew)   106 25
Erinaceus_europaeus_76   (Western European hedgehog)   139 33
Procavia_capensis_76_1   (Cape rock hyrax)   174 36
Loxodonta_africana_76_3   (African savanna elephant)   236 56
Echinops_telfairi_76   (Small Madagascar hedgehog)   144 32
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   268 57
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   117 25
Macropus_eugenii_76_1.0   (Tammar wallaby)   183 39
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   228 61
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   214 49
Ornithorhynchus_anatinus_76_5   (Platypus)   206 53
Saccoglossus_kowalevskii_v3.0 1261 297
Petromyzon_marinus_76_7.0   (Sea lamprey)   203 25
Meleagris_gallopavo_76_2   (Turkey)   201 50
Gallus_gallus_76_4   (Chicken)   222 45
Anas_platyrhynchos_76_1.0   (Mallard)   185 45
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   193 44
Ficedula_albicollis_76_1.0   (Collared flycatcher)   218 43
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   212 59
Anolis_carolinensis_76_2.0   (Green anole)   230 49
Xenopus_laevis_   (African clawed frog)   176 45
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   231 62
Latimeria_chalumnae_76_1   (Coelacanth)   249 52
Lepisosteus_oculatus_76   (Spotted gar)   373 70
Gadus_morhua_76_1   (Atlantic cod)   251 50
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   445 69
Takifugu_rubripes_76_4   (Torafugu)   1153 201
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   365 68
Oryzias_latipes_76_1   (Japanese medaka)   304 56
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   308 56
Poecilia_formosa_76   (Amazon molly)   313 57
Oreochromis_niloticus_76_1.0   (Nile tilapia)   440 81
Astyanax_mexicanus_76   (Mexican tetra)   293 73
Danio_rerio_76_9   (Zebrafish)   537 103
Oikopleura_dioica 54 30
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   454 80
Ciona_intestinalis_76   (Vase tunicate)   156 67
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   601 193
Adineta_vaga 274 125
Octopus_bimaculoides_280 398 81
Crassostrea_gigas_22   (Pacific oyster)   237 86
Lottia_gigantea_   (Owl limpet)   212 60
Helobdella_robusta_ 208 57
Capitella_sp._I_ 359 115
Danaus_plexippus_OGS1.0   (Monarch butterfly)   163 38
Heliconius_melpomene_   (Postman butterfly)   145 29
Bombyx_mori_   (Domestic silkworm)   97 41
Nasonia_vitripennis_   (Jewel wasp)   89 27
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   323 64
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   128 38
Linepithema_humile_v1.1   (Argentine ant)   122 43
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   116 43
Solenopsis_invicta_v.2.2.3   (Red fire ant)   98 38
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   126 36
Atta_cephalotes_v1.1 125 40
Camponotus_floridanus_v3.3   (Florida carpenter ant)   131 35
Lucilia_cuprina   (Australian sheep blowfly)   189 33
Drosophila_grimshawi_1.3 174 37
Drosophila_willistoni_1.3 172 39
Drosophila_pseudoobscura_2.13 181 42
Drosophila_persimilis_1.3 170 43
Drosophila_suzukii 171 33
Drosophila_yakuba_1.3 172 38
Drosophila_simulans_1.3 99 33
Drosophila_sechellia_1.3 155 40
Drosophila_melanogaster_76_5   (Fruit fly)   643 97
Drosophila_erecta_1.3 173 37
Drosophila_ananassae_1.3 157 32
Drosophila_virilis_1.2 158 36
Drosophila_mojavensis_1.3 171 37
Megaselia_scalaris_22 44 19
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   166 35
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   107 38
Anopheles_darlingi_22   (American malaria mosquito)   118 28
Anopheles_gambiae_49_3j   (African malaria mosquito)   161 32
Tribolium_castaneum_3.0   (Red flour beetle)   179 43
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   171 34
Acyrthosiphon_pisum_   (Pea aphid)   150 36
Rhodnius_prolixus_22 125 30
Daphnia_pulex_   (Common water flea)   221 61
Strigamia_maritima_22 202 47
Sarcoptes_scabiei 128 42
Tetranychus_urticae_   (Two-spotted spider mite)   193 71
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   139 44
Pristionchus_pacificus_ 91 28
Meloidogyne_incognita_   (Southern root-knot nematode)   95 18
Meloidogyne_hapla_ 27 13
Onchocerca_volvulus_22 73 17
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   129 27
Caenorhabditis_japonica_ 103 24
Caenorhabditis_brenneri_ 168 39
Caenorhabditis_remanei_ 123 29
Caenorhabditis_elegans_76_235   (Roundworm)   177 44
Caenorhabditis_briggsae_2 118 26
Trichinella_spiralis_22 119 32
Hymenolepis_microstoma_ 45 11
Echinococcus_multilocularis_ 39 13
Echinococcus_granulosus_ 38 12
Taenia_solium_   (Pork tapeworm)   35 17
Schistosoma_mansoni_ 18 9
Mnemiopsis_leidyi   (Sea walnut)   413 204
Thelohanellus_kitauei 270 126
Acropora_digitifera_v1.0 105 35
Nematostella_vectensis_1.0   (Starlet sea anemone)   144 35
Hydra_vulgaris 77 17
Amphimedon_queenslandica 13 3
Trichoplax_adhaerens_ 103 18
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 17 17
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Rhizopus_oryzae_RA_99-880_ 1 1
Rhizomucor_miehei_CAU432_ 1 1
Sphaerobolus_stellatus_v1.0 1 1
Tulasnella_calospora_AL13/4D_v1.0 1 1
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_niger_22 1 1
Aspergillus_niger_ATCC_1015_ 1 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Saccharomyces_paradoxus_MIT 1 1
Schizosaccharomyces_japonicus_yFS275_ 1 1
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 1 1
Dictyostelium_purpureum_ 1 1
Gossypium_raimondii_v221 2 2
Citrus_clementina_v165 2 2
Citrus_sinensis_v154   (Sweet orange)   2 2
Manihot_esculenta_v147   (Cassava)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Solanum_tuberosum_   (Potato)   3 3
Triticum_aestivum_22   (Bread wheat)   5 5
Brachypodium_distachyon_   (Stiff brome)   3 3
Panicum_virgatum_v202   (Switchgrass)   1 1
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   2 2
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 2 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_vivax_ 1 1
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_sojae_1.1 1 1
Perkinsus_marinus_ATCC_50983_ 2 2
Naegleria_gruberi_ 1 1
Trichomonas_vaginalis_ 8 6
Emiliania_huxleyi_CCMP1516_ 1 1
Haliangium_ochraceum_DSM_14365 4 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   272 61
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   446 71
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   209 34
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   106 28
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   150 35
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Trypanosoma_brucei_Lister_427_v4.1 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   219 45
Pan_troglodytes_69_2.1.4   (Chimpanzee)   212 44
Gorilla_gorilla_69_3.1   (Western gorilla)   191 46
Pongo_abelii_69_2   (Sumatran orangutan)   201 44
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   188 47
Macaca_mulatta_69_1   (Rhesus monkey)   192 45
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   216 49
Otolemur_garnettii_69_3   (Small-eared galago)   202 43
Microcebus_murinus_69_1   (Gray mouse lemur)   178 42
Rattus_norvegicus_69_3.4   (Norway rat)   203 51
Mus_musculus_69_38   (House mouse)   222 47
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   182 41
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   193 41
Cavia_porcellus_69_3   (Domestic guinea pig)   199 49
Oryctolagus_cuniculus_69_2   (Rabbit)   202 46
Ochotona_princeps_69   (American pika)   188 39
Tupaia_belangeri_69   (Northern tree shrew)   156 37
Sus_scrofa_69_10.2   (Pig)   143 48
Bos_taurus_69_3.1   (Cattle)   205 47
Vicugna_pacos_69_1   (Alpaca)   117 23
Tursiops_truncatus_69_1   (Bottlenose dolphin)   196 45
Mustela_putorius_furo_69_1.0   (Domestic ferret)   230 46
Ailuropoda_melanoleuca_69_1   (Giant panda)   224 48
Canis_familiaris_69_3.1   (Dog)   243 49
Felis_catus_69   (Domestic cat)   141 37
Equus_caballus_69_2   (Horse)   223 52
Myotis_lucifugus_69_2.0   (Little brown bat)   183 43
Pteropus_vampyrus_69_1   (Large flying fox)   203 43
Sorex_araneus_69_1   (European shrew)   106 25
Erinaceus_europaeus_69   (Western European hedgehog)   139 33
Procavia_capensis_69_1   (Cape rock hyrax)   174 36
Loxodonta_africana_69_3   (African savanna elephant)   187 43
Echinops_telfairi_69   (Small Madagascar hedgehog)   144 32
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   144 28
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   117 25
Macropus_eugenii_69_1.0   (Tammar wallaby)   183 39
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   181 44
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   212 48
Ornithorhynchus_anatinus_69_5   (Platypus)   175 47
Petromyzon_marinus_69_7.0   (Sea lamprey)   168 21
Meleagris_gallopavo_69_2   (Turkey)   169 44
Gallus_gallus_69_2   (Chicken)   171 37
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   187 40
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   175 46
Anolis_carolinensis_69_2.0   (Green anole)   223 47
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   220 53
Latimeria_chalumnae_69_1   (Coelacanth)   192 43
Gadus_morhua_69_1   (Atlantic cod)   237 47
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   307 53
Takifugu_rubripes_69_4   (Torafugu)   272 48
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   314 55
Oryzias_latipes_69_1   (Japanese medaka)   275 44
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   308 56
Oreochromis_niloticus_69_1.0   (Nile tilapia)   337 58
Danio_rerio_69_9   (Zebrafish)   342 61
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   155 51
Ciona_intestinalis_69   (Vase tunicate)   143 62
Drosophila_melanogaster_69_5   (Fruit fly)   168 35
Caenorhabditis_elegans_69_215   (Roundworm)   126 26

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   505 148
Homo_sapiens__(NCBI_version)   (Human)   303 75
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   220 45
Heliconius_numata__(Incomplete) 12 9
Loa_loa_v3.3_(Request)   (Eye worm)   74 20
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   63 26
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   55 14
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 3 3
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Protein_Data_Bank_(all_PDB_sequenc) 207 160
STRING_v9.0.5_(STRING) 10524 2529
Uniprot_2018_03_genome 103788 23713
NCBI_2017_08_genome 143684 28917
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 244 244
Protozoadb_2010_08_(Protozoadb) 18 14
PDB_chains_(SCOP_1.75)_(PDB) 26 18
TargetDB__(Targets) 96 34

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