SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Kringle-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Kringle-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   167 86
Pan_troglodytes_76_2.1.4   (Chimpanzee)   62 26
Gorilla_gorilla_76_3.1   (Western gorilla)   89 40
Pongo_abelii_76_2   (Sumatran orangutan)   60 27
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   54 29
Papio_anubis_76   (Olive baboon)   58 29
Macaca_mulatta_76_1   (Rhesus monkey)   93 48
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   107 65
Otolemur_garnettii_76_3   (Small-eared galago)   47 25
Microcebus_murinus_76_1   (Gray mouse lemur)   34 20
Rattus_norvegicus_76_5.0   (Norway rat)   46 27
Mus_musculus_76_38   (House mouse)   75 44
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   33 20
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   47 24
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   47 26
Cavia_porcellus_76_3   (Domestic guinea pig)   53 27
Oryctolagus_cuniculus_76_2   (Rabbit)   54 29
Ochotona_princeps_76   (American pika)   39 22
Tupaia_belangeri_76   (Northern tree shrew)   28 16
Sus_scrofa_76_10.2   (Pig)   60 29
Bos_taurus_76_3.1   (Cattle)   64 33
Ovis_aries_76_3.1   (Sheep)   61 33
Vicugna_pacos_76_1   (Alpaca)   22 13
Tursiops_truncatus_76_1   (Bottlenose dolphin)   36 21
Mustela_putorius_furo_76_1.0   (Domestic ferret)   48 25
Ailuropoda_melanoleuca_76_1   (Giant panda)   60 31
Canis_familiaris_76_3.1   (Dog)   77 41
Felis_catus_76_6.2   (Domestic cat)   52 28
Equus_caballus_76_2   (Horse)   57 30
Myotis_lucifugus_76_2.0   (Little brown bat)   48 26
Pteropus_vampyrus_76_1   (Large flying fox)   39 23
Sorex_araneus_76_1   (European shrew)   29 17
Erinaceus_europaeus_76   (Western European hedgehog)   35 18
Procavia_capensis_76_1   (Cape rock hyrax)   44 23
Loxodonta_africana_76_3   (African savanna elephant)   65 35
Echinops_telfairi_76   (Small Madagascar hedgehog)   39 21
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   47 25
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   28 15
Macropus_eugenii_76_1.0   (Tammar wallaby)   31 18
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   65 33
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   39 21
Ornithorhynchus_anatinus_76_5   (Platypus)   53 24
Saccoglossus_kowalevskii_v3.0 101 30
Petromyzon_marinus_76_7.0   (Sea lamprey)   18 9
Meleagris_gallopavo_76_2   (Turkey)   49 26
Gallus_gallus_76_4   (Chicken)   49 27
Anas_platyrhynchos_76_1.0   (Mallard)   42 25
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   42 23
Ficedula_albicollis_76_1.0   (Collared flycatcher)   47 26
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   48 29
Anolis_carolinensis_76_2.0   (Green anole)   72 29
Xenopus_laevis_   (African clawed frog)   95 41
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   52 27
Latimeria_chalumnae_76_1   (Coelacanth)   61 26
Lepisosteus_oculatus_76   (Spotted gar)   61 32
Gadus_morhua_76_1   (Atlantic cod)   48 26
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   81 39
Takifugu_rubripes_76_4   (Torafugu)   277 139
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   78 41
Oryzias_latipes_76_1   (Japanese medaka)   50 28
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   49 27
Poecilia_formosa_76   (Amazon molly)   59 31
Oreochromis_niloticus_76_1.0   (Nile tilapia)   82 44
Astyanax_mexicanus_76   (Mexican tetra)   60 35
Danio_rerio_76_9   (Zebrafish)   67 41
Oikopleura_dioica 40 29
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   29 16
Ciona_intestinalis_76   (Vase tunicate)   26 18
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   54 31
Adineta_vaga 18 14
Octopus_bimaculoides_280 20 11
Crassostrea_gigas_22   (Pacific oyster)   95 50
Lottia_gigantea_   (Owl limpet)   31 22
Helobdella_robusta_ 12 10
Capitella_sp._I_ 57 50
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2 2
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   3 3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   20 11
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   7 4
Linepithema_humile_v1.1   (Argentine ant)   7 4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4 4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   5 4
Atta_cephalotes_v1.1 5 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5 3
Lucilia_cuprina   (Australian sheep blowfly)   2 2
Drosophila_grimshawi_1.3 2 2
Drosophila_willistoni_1.3 2 2
Drosophila_pseudoobscura_2.13 2 2
Drosophila_persimilis_1.3 2 2
Drosophila_suzukii 2 2
Drosophila_yakuba_1.3 2 2
Drosophila_simulans_1.3 2 2
Drosophila_sechellia_1.3 2 2
Drosophila_melanogaster_76_5   (Fruit fly)   2 2
Drosophila_erecta_1.3 2 2
Drosophila_ananassae_1.3 2 2
Drosophila_virilis_1.2 2 2
Drosophila_mojavensis_1.3 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2 2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2 2
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   2 2
Tribolium_castaneum_3.0   (Red flour beetle)   6 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   7 4
Acyrthosiphon_pisum_   (Pea aphid)   3 3
Rhodnius_prolixus_22 3 3
Daphnia_pulex_   (Common water flea)   4 4
Strigamia_maritima_22 3 3
Sarcoptes_scabiei 2 2
Tetranychus_urticae_   (Two-spotted spider mite)   4 4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Pristionchus_pacificus_ 1 1
Meloidogyne_incognita_   (Southern root-knot nematode)   4 4
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   5 5
Caenorhabditis_japonica_ 4 4
Caenorhabditis_brenneri_ 6 5
Caenorhabditis_remanei_ 5 5
Caenorhabditis_elegans_76_235   (Roundworm)   6 6
Caenorhabditis_briggsae_2 4 4
Trichinella_spiralis_22 9 6
Hymenolepis_microstoma_ 4 3
Echinococcus_multilocularis_ 3 2
Echinococcus_granulosus_ 3 2
Taenia_solium_   (Pork tapeworm)   3 2
Schistosoma_mansoni_ 6 3
Mnemiopsis_leidyi   (Sea walnut)   58 41
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 32 20
Nematostella_vectensis_1.0   (Starlet sea anemone)   23 19
Hydra_vulgaris 15 11
Amphimedon_queenslandica 4 3
Trichoplax_adhaerens_ 29 25
Proterospongia_sp._ATCC_50818_ 9 7
Monosiga_brevicollis_ 5 4
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Spizellomyces_punctatus_DAOM_BR117_ 1 1
Chlorella_vulgaris_ 1 1
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 3 3
Ostreococcus_tauri_ 5 5
Bathycoccus_prasinos_ 11 8
Micromonas_sp._RCC299_ 2 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Bigelowiella_natans_CCMP2755_22 2 2
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Aureococcus_anophagefferens_ 6 5
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 5 3
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 10 10
Guillardia_theta_CCMP2712_v1.0_ 8 7
Emiliania_huxleyi_CCMP1516_ 25 20

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   56 28
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2 2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2 2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6 6
Neospora_caninum_Nc-Liverpool_6.2 1 1
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   71 30
Pan_troglodytes_69_2.1.4   (Chimpanzee)   61 25
Gorilla_gorilla_69_3.1   (Western gorilla)   68 28
Pongo_abelii_69_2   (Sumatran orangutan)   50 23
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   46 25
Macaca_mulatta_69_1   (Rhesus monkey)   57 27
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   45 25
Otolemur_garnettii_69_3   (Small-eared galago)   47 25
Microcebus_murinus_69_1   (Gray mouse lemur)   34 20
Rattus_norvegicus_69_3.4   (Norway rat)   46 25
Mus_musculus_69_38   (House mouse)   47 26
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   33 20
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   42 22
Cavia_porcellus_69_3   (Domestic guinea pig)   47 25
Oryctolagus_cuniculus_69_2   (Rabbit)   48 26
Ochotona_princeps_69   (American pika)   39 22
Tupaia_belangeri_69   (Northern tree shrew)   28 16
Sus_scrofa_69_10.2   (Pig)   55 27
Bos_taurus_69_3.1   (Cattle)   53 28
Vicugna_pacos_69_1   (Alpaca)   22 13
Tursiops_truncatus_69_1   (Bottlenose dolphin)   36 21
Mustela_putorius_furo_69_1.0   (Domestic ferret)   48 25
Ailuropoda_melanoleuca_69_1   (Giant panda)   50 26
Canis_familiaris_69_3.1   (Dog)   51 27
Felis_catus_69   (Domestic cat)   32 22
Equus_caballus_69_2   (Horse)   53 28
Myotis_lucifugus_69_2.0   (Little brown bat)   48 26
Pteropus_vampyrus_69_1   (Large flying fox)   39 23
Sorex_araneus_69_1   (European shrew)   29 17
Erinaceus_europaeus_69   (Western European hedgehog)   35 18
Procavia_capensis_69_1   (Cape rock hyrax)   44 23
Loxodonta_africana_69_3   (African savanna elephant)   49 27
Echinops_telfairi_69   (Small Madagascar hedgehog)   39 21
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   26 17
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   28 15
Macropus_eugenii_69_1.0   (Tammar wallaby)   31 18
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   46 26
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   39 21
Ornithorhynchus_anatinus_69_5   (Platypus)   44 21
Petromyzon_marinus_69_7.0   (Sea lamprey)   18 9
Meleagris_gallopavo_69_2   (Turkey)   37 20
Gallus_gallus_69_2   (Chicken)   40 23
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   42 23
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   39 23
Anolis_carolinensis_69_2.0   (Green anole)   45 25
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   43 22
Latimeria_chalumnae_69_1   (Coelacanth)   40 20
Gadus_morhua_69_1   (Atlantic cod)   48 26
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   48 24
Takifugu_rubripes_69_4   (Torafugu)   57 30
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   49 28
Oryzias_latipes_69_1   (Japanese medaka)   46 24
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   49 27
Oreochromis_niloticus_69_1.0   (Nile tilapia)   55 30
Danio_rerio_69_9   (Zebrafish)   49 29
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   15 8
Ciona_intestinalis_69   (Vase tunicate)   25 17
Drosophila_melanogaster_69_5   (Fruit fly)   2 2
Caenorhabditis_elegans_69_215   (Roundworm)   4 4

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   185 96
Homo_sapiens__(NCBI_version)   (Human)   98 47
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   46 25
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Protein_Data_Bank_(all_PDB_sequenc) 267 202
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 577 577
STRING_v9.0.5_(STRING) 1922 1137
Protozoadb_2010_08_(Protozoadb) 22 22
Uniprot_2018_03_genome 12453 7169
NCBI_2017_08_genome 20935 11223
TargetDB__(Targets) 34 23
PDB_chains_(SCOP_1.75)_(PDB) 59 47

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]