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Domain combinations for Complement control module/SCR domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Complement control module/SCR domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   1435 333
Pan_troglodytes_76_2.1.4   (Chimpanzee)   325 57
Gorilla_gorilla_76_3.1   (Western gorilla)   448 88
Pongo_abelii_76_2   (Sumatran orangutan)   317 56
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   308 50
Papio_anubis_76   (Olive baboon)   302 59
Macaca_mulatta_76_1   (Rhesus monkey)   637 126
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   608 130
Otolemur_garnettii_76_3   (Small-eared galago)   278 49
Microcebus_murinus_76_1   (Gray mouse lemur)   206 43
Rattus_norvegicus_76_5.0   (Norway rat)   345 72
Mus_musculus_76_38   (House mouse)   583 113
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   212 40
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   244 48
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   276 49
Cavia_porcellus_76_3   (Domestic guinea pig)   316 64
Oryctolagus_cuniculus_76_2   (Rabbit)   296 54
Ochotona_princeps_76   (American pika)   235 42
Tupaia_belangeri_76   (Northern tree shrew)   223 41
Sus_scrofa_76_10.2   (Pig)   330 84
Bos_taurus_76_3.1   (Cattle)   367 70
Ovis_aries_76_3.1   (Sheep)   384 65
Vicugna_pacos_76_1   (Alpaca)   237 37
Tursiops_truncatus_76_1   (Bottlenose dolphin)   248 48
Mustela_putorius_furo_76_1.0   (Domestic ferret)   338 59
Ailuropoda_melanoleuca_76_1   (Giant panda)   376 68
Canis_familiaris_76_3.1   (Dog)   524 79
Felis_catus_76_6.2   (Domestic cat)   293 60
Equus_caballus_76_2   (Horse)   670 77
Myotis_lucifugus_76_2.0   (Little brown bat)   436 79
Pteropus_vampyrus_76_1   (Large flying fox)   266 48
Sorex_araneus_76_1   (European shrew)   180 32
Erinaceus_europaeus_76   (Western European hedgehog)   185 40
Procavia_capensis_76_1   (Cape rock hyrax)   200 44
Loxodonta_africana_76_3   (African savanna elephant)   368 73
Echinops_telfairi_76   (Small Madagascar hedgehog)   224 40
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   398 71
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   188 30
Macropus_eugenii_76_1.0   (Tammar wallaby)   189 42
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   281 61
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   292 53
Ornithorhynchus_anatinus_76_5   (Platypus)   317 73
Saccoglossus_kowalevskii_v3.0 436 89
Petromyzon_marinus_76_7.0   (Sea lamprey)   116 22
Meleagris_gallopavo_76_2   (Turkey)   235 53
Gallus_gallus_76_4   (Chicken)   257 40
Anas_platyrhynchos_76_1.0   (Mallard)   260 45
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   255 50
Ficedula_albicollis_76_1.0   (Collared flycatcher)   243 46
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   320 56
Anolis_carolinensis_76_2.0   (Green anole)   288 48
Xenopus_laevis_   (African clawed frog)   169 68
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   282 60
Latimeria_chalumnae_76_1   (Coelacanth)   210 59
Lepisosteus_oculatus_76   (Spotted gar)   357 61
Gadus_morhua_76_1   (Atlantic cod)   209 51
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   385 69
Takifugu_rubripes_76_4   (Torafugu)   1131 209
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   343 72
Oryzias_latipes_76_1   (Japanese medaka)   280 61
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   267 52
Poecilia_formosa_76   (Amazon molly)   273 52
Oreochromis_niloticus_76_1.0   (Nile tilapia)   372 77
Astyanax_mexicanus_76   (Mexican tetra)   274 73
Danio_rerio_76_9   (Zebrafish)   514 124
Oikopleura_dioica 95 41
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   702 114
Ciona_intestinalis_76   (Vase tunicate)   377 94
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   760 248
Adineta_vaga 31 10
Octopus_bimaculoides_280 214 50
Crassostrea_gigas_22   (Pacific oyster)   252 106
Lottia_gigantea_   (Owl limpet)   351 126
Helobdella_robusta_ 57 11
Capitella_sp._I_ 352 80
Danaus_plexippus_OGS1.0   (Monarch butterfly)   39 12
Heliconius_melpomene_   (Postman butterfly)   40 12
Bombyx_mori_   (Domestic silkworm)   35 11
Nasonia_vitripennis_   (Jewel wasp)   42 10
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   69 16
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   60 19
Linepithema_humile_v1.1   (Argentine ant)   60 15
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   51 14
Solenopsis_invicta_v.2.2.3   (Red fire ant)   37 12
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   54 13
Atta_cephalotes_v1.1 55 15
Camponotus_floridanus_v3.3   (Florida carpenter ant)   53 13
Lucilia_cuprina   (Australian sheep blowfly)   44 9
Drosophila_grimshawi_1.3 55 14
Drosophila_willistoni_1.3 49 12
Drosophila_pseudoobscura_2.13 53 15
Drosophila_persimilis_1.3 46 13
Drosophila_suzukii 53 14
Drosophila_yakuba_1.3 56 17
Drosophila_simulans_1.3 45 15
Drosophila_sechellia_1.3 51 16
Drosophila_melanogaster_76_5   (Fruit fly)   185 41
Drosophila_erecta_1.3 56 17
Drosophila_ananassae_1.3 48 11
Drosophila_virilis_1.2 50 11
Drosophila_mojavensis_1.3 47 11
Megaselia_scalaris_22 19 9
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   56 18
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   49 16
Anopheles_darlingi_22   (American malaria mosquito)   28 5
Anopheles_gambiae_49_3j   (African malaria mosquito)   51 14
Tribolium_castaneum_3.0   (Red flour beetle)   75 17
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   54 11
Acyrthosiphon_pisum_   (Pea aphid)   45 10
Rhodnius_prolixus_22 40 11
Daphnia_pulex_   (Common water flea)   108 24
Strigamia_maritima_22 123 38
Sarcoptes_scabiei 48 13
Tetranychus_urticae_   (Two-spotted spider mite)   87 25
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   90 40
Pristionchus_pacificus_ 14 6
Meloidogyne_incognita_   (Southern root-knot nematode)   73 27
Meloidogyne_hapla_ 11 5
Onchocerca_volvulus_22 50 14
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   42 18
Caenorhabditis_japonica_ 45 13
Caenorhabditis_brenneri_ 69 10
Caenorhabditis_remanei_ 49 12
Caenorhabditis_elegans_76_235   (Roundworm)   126 19
Caenorhabditis_briggsae_2 45 8
Trichinella_spiralis_22 28 10
Hymenolepis_microstoma_ 11 5
Echinococcus_multilocularis_ 8 2
Echinococcus_granulosus_ 9 2
Taenia_solium_   (Pork tapeworm)   9 3
Schistosoma_mansoni_ 6 3
Mnemiopsis_leidyi   (Sea walnut)   262 110
Acropora_digitifera_v1.0 343 78
Nematostella_vectensis_1.0   (Starlet sea anemone)   120 33
Hydra_vulgaris 48 17
Amphimedon_queenslandica 273 48
Trichoplax_adhaerens_ 7 2
Proterospongia_sp._ATCC_50818_ 102 32
Monosiga_brevicollis_ 30 12
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 128 20
Micromonas_pusilla_CCMP1545_v3.0 1 1
Thecamonas_trahens_ATCC_50062_ 227 38
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 1 1
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_infestans_T30-4_ 1 1
Perkinsus_marinus_ATCC_50983_ 2 1
Cryptosporidium_hominis 2 2
Cryptosporidium_muris 2 2
Cryptosporidium_parvum_Iowa_II 2 2
Neospora_caninum 2 2
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 2 2
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 29 17
Guillardia_theta_CCMP2712_v1.0_ 32 13

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   359 80
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   155 34
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   60 15
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   43 11
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   53 14
Neospora_caninum_Nc-Liverpool_6.2 2 2
Plasmodium_falciparum_HB3_ 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   414 76
Pan_troglodytes_69_2.1.4   (Chimpanzee)   322 54
Gorilla_gorilla_69_3.1   (Western gorilla)   314 51
Pongo_abelii_69_2   (Sumatran orangutan)   311 54
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   265 46
Macaca_mulatta_69_1   (Rhesus monkey)   285 54
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   307 53
Otolemur_garnettii_69_3   (Small-eared galago)   275 47
Microcebus_murinus_69_1   (Gray mouse lemur)   206 43
Rattus_norvegicus_69_3.4   (Norway rat)   299 55
Mus_musculus_69_38   (House mouse)   291 58
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   212 40
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   236 47
Cavia_porcellus_69_3   (Domestic guinea pig)   260 47
Oryctolagus_cuniculus_69_2   (Rabbit)   290 51
Ochotona_princeps_69   (American pika)   235 42
Tupaia_belangeri_69   (Northern tree shrew)   223 41
Sus_scrofa_69_10.2   (Pig)   266 54
Bos_taurus_69_3.1   (Cattle)   301 54
Vicugna_pacos_69_1   (Alpaca)   237 37
Tursiops_truncatus_69_1   (Bottlenose dolphin)   248 48
Mustela_putorius_furo_69_1.0   (Domestic ferret)   311 58
Ailuropoda_melanoleuca_69_1   (Giant panda)   286 57
Canis_familiaris_69_3.1   (Dog)   292 48
Felis_catus_69   (Domestic cat)   175 42
Equus_caballus_69_2   (Horse)   323 55
Myotis_lucifugus_69_2.0   (Little brown bat)   396 71
Pteropus_vampyrus_69_1   (Large flying fox)   266 48
Sorex_araneus_69_1   (European shrew)   180 32
Erinaceus_europaeus_69   (Western European hedgehog)   185 40
Procavia_capensis_69_1   (Cape rock hyrax)   200 44
Loxodonta_africana_69_3   (African savanna elephant)   293 55
Echinops_telfairi_69   (Small Madagascar hedgehog)   224 40
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   204 43
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   188 30
Macropus_eugenii_69_1.0   (Tammar wallaby)   189 42
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   212 45
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   279 52
Ornithorhynchus_anatinus_69_5   (Platypus)   277 64
Petromyzon_marinus_69_7.0   (Sea lamprey)   113 21
Meleagris_gallopavo_69_2   (Turkey)   205 43
Gallus_gallus_69_2   (Chicken)   252 42
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   250 47
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   269 48
Anolis_carolinensis_69_2.0   (Green anole)   258 43
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   243 49
Latimeria_chalumnae_69_1   (Coelacanth)   174 47
Gadus_morhua_69_1   (Atlantic cod)   193 47
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   248 53
Takifugu_rubripes_69_4   (Torafugu)   249 49
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   270 53
Oryzias_latipes_69_1   (Japanese medaka)   257 51
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   267 52
Oreochromis_niloticus_69_1.0   (Nile tilapia)   312 58
Danio_rerio_69_9   (Zebrafish)   338 71
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   360 70
Ciona_intestinalis_69   (Vase tunicate)   368 92
Drosophila_melanogaster_69_5   (Fruit fly)   55 15
Caenorhabditis_elegans_69_215   (Roundworm)   49 10

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1543 346
Homo_sapiens__(NCBI_version)   (Human)   592 109
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   294 55
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   46 12
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   38 17
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   31 11
TargetDB__(Targets) 314 85
UniProt__viral_sequences_(Viral) 446 138
STRING_v9.0.5_(STRING) 10951 2334
Uniprot_2018_03_genome 84109 19171
NCBI_2017_08_genome 135945 27302
PDB_chains_(SCOP_1.75)_(PDB) 82 40
Protozoadb_2010_08_(Protozoadb) 24 24
Protein_Data_Bank_(all_PDB_sequenc) 684 262
NCBI_viral_sequences_(Viral) 117 36
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1247 1247

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