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Domain combinations for TB module/8-cys domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a TB module/8-cys domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   152 43
Pan_troglodytes_76_2.1.4   (Chimpanzee)   43 9
Gorilla_gorilla_76_3.1   (Western gorilla)   69 14
Pongo_abelii_76_2   (Sumatran orangutan)   48 10
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   41 8
Papio_anubis_76   (Olive baboon)   46 10
Macaca_mulatta_76_1   (Rhesus monkey)   66 17
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   58 18
Otolemur_garnettii_76_3   (Small-eared galago)   45 9
Microcebus_murinus_76_1   (Gray mouse lemur)   29 6
Rattus_norvegicus_76_5.0   (Norway rat)   35 8
Mus_musculus_76_38   (House mouse)   81 21
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   38 7
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   43 9
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   39 8
Cavia_porcellus_76_3   (Domestic guinea pig)   34 6
Oryctolagus_cuniculus_76_2   (Rabbit)   46 8
Ochotona_princeps_76   (American pika)   36 8
Tupaia_belangeri_76   (Northern tree shrew)   26 6
Sus_scrofa_76_10.2   (Pig)   36 11
Bos_taurus_76_3.1   (Cattle)   57 12
Ovis_aries_76_3.1   (Sheep)   49 10
Vicugna_pacos_76_1   (Alpaca)   16 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   42 9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   54 10
Ailuropoda_melanoleuca_76_1   (Giant panda)   57 11
Canis_familiaris_76_3.1   (Dog)   54 11
Felis_catus_76_6.2   (Domestic cat)   42 9
Equus_caballus_76_2   (Horse)   82 14
Myotis_lucifugus_76_2.0   (Little brown bat)   30 7
Pteropus_vampyrus_76_1   (Large flying fox)   41 8
Sorex_araneus_76_1   (European shrew)   18 4
Erinaceus_europaeus_76   (Western European hedgehog)   23 4
Procavia_capensis_76_1   (Cape rock hyrax)   38 8
Loxodonta_africana_76_3   (African savanna elephant)   56 11
Echinops_telfairi_76   (Small Madagascar hedgehog)   21 5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   37 10
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   20 4
Macropus_eugenii_76_1.0   (Tammar wallaby)   28 7
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   32 9
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   43 9
Ornithorhynchus_anatinus_76_5   (Platypus)   21 6
Saccoglossus_kowalevskii_v3.0 25 6
Petromyzon_marinus_76_7.0   (Sea lamprey)   19 5
Meleagris_gallopavo_76_2   (Turkey)   29 8
Gallus_gallus_76_4   (Chicken)   36 6
Anas_platyrhynchos_76_1.0   (Mallard)   34 6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   25 6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   35 6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   39 9
Anolis_carolinensis_76_2.0   (Green anole)   47 10
Xenopus_laevis_   (African clawed frog)   19 8
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   41 8
Latimeria_chalumnae_76_1   (Coelacanth)   47 12
Lepisosteus_oculatus_76   (Spotted gar)   61 11
Gadus_morhua_76_1   (Atlantic cod)   32 8
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   67 14
Takifugu_rubripes_76_4   (Torafugu)   119 28
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   34 8
Oryzias_latipes_76_1   (Japanese medaka)   37 9
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   29 8
Poecilia_formosa_76   (Amazon molly)   37 9
Oreochromis_niloticus_76_1.0   (Nile tilapia)   44 10
Astyanax_mexicanus_76   (Mexican tetra)   38 9
Danio_rerio_76_9   (Zebrafish)   39 15
Oikopleura_dioica 3 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   64 10
Ciona_intestinalis_76   (Vase tunicate)   10 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   15 4
Octopus_bimaculoides_280 9 3
Crassostrea_gigas_22   (Pacific oyster)   7 1
Lottia_gigantea_   (Owl limpet)   9 1
Capitella_sp._I_ 7 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9 1
Heliconius_melpomene_   (Postman butterfly)   9 1
Bombyx_mori_   (Domestic silkworm)   9 6
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   51 8
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   9 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   7 4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   7 4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   9 1
Atta_cephalotes_v1.1 8 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9 1
Drosophila_pseudoobscura_2.13 3 3
Drosophila_persimilis_1.3 2 2
Drosophila_ananassae_1.3 1 1
Tribolium_castaneum_3.0   (Red flour beetle)   9 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   9 1
Acyrthosiphon_pisum_   (Pea aphid)   9 1
Rhodnius_prolixus_22 9 1
Daphnia_pulex_   (Common water flea)   9 1
Strigamia_maritima_22 3 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3 1
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 1 1
Acropora_digitifera_v1.0 5 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   6 4
Hydra_vulgaris 11 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   34 9

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   45 9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   43 9
Gorilla_gorilla_69_3.1   (Western gorilla)   44 9
Pongo_abelii_69_2   (Sumatran orangutan)   44 9
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   41 8
Macaca_mulatta_69_1   (Rhesus monkey)   50 10
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   40 10
Otolemur_garnettii_69_3   (Small-eared galago)   45 9
Microcebus_murinus_69_1   (Gray mouse lemur)   29 6
Rattus_norvegicus_69_3.4   (Norway rat)   42 10
Mus_musculus_69_38   (House mouse)   36 8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   38 7
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   43 9
Cavia_porcellus_69_3   (Domestic guinea pig)   34 6
Oryctolagus_cuniculus_69_2   (Rabbit)   38 7
Ochotona_princeps_69   (American pika)   36 8
Tupaia_belangeri_69   (Northern tree shrew)   26 6
Sus_scrofa_69_10.2   (Pig)   28 8
Bos_taurus_69_3.1   (Cattle)   45 9
Vicugna_pacos_69_1   (Alpaca)   16 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   42 9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   45 9
Ailuropoda_melanoleuca_69_1   (Giant panda)   44 9
Canis_familiaris_69_3.1   (Dog)   44 8
Felis_catus_69   (Domestic cat)   30 8
Equus_caballus_69_2   (Horse)   33 8
Myotis_lucifugus_69_2.0   (Little brown bat)   30 7
Pteropus_vampyrus_69_1   (Large flying fox)   41 8
Sorex_araneus_69_1   (European shrew)   18 4
Erinaceus_europaeus_69   (Western European hedgehog)   23 4
Procavia_capensis_69_1   (Cape rock hyrax)   38 8
Loxodonta_africana_69_3   (African savanna elephant)   43 9
Echinops_telfairi_69   (Small Madagascar hedgehog)   21 5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   16 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   20 4
Macropus_eugenii_69_1.0   (Tammar wallaby)   28 7
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   24 7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   39 8
Ornithorhynchus_anatinus_69_5   (Platypus)   21 6
Petromyzon_marinus_69_7.0   (Sea lamprey)   17 4
Meleagris_gallopavo_69_2   (Turkey)   29 8
Gallus_gallus_69_2   (Chicken)   36 6
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   25 6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   35 8
Anolis_carolinensis_69_2.0   (Green anole)   39 9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   39 6
Latimeria_chalumnae_69_1   (Coelacanth)   37 8
Gadus_morhua_69_1   (Atlantic cod)   32 8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   33 9
Takifugu_rubripes_69_4   (Torafugu)   29 7
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   34 8
Oryzias_latipes_69_1   (Japanese medaka)   36 8
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   29 8
Oreochromis_niloticus_69_1.0   (Nile tilapia)   36 8
Danio_rerio_69_9   (Zebrafish)   28 10
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   8 1
Ciona_intestinalis_69   (Vase tunicate)   10 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   154 44
Homo_sapiens__(NCBI_version)   (Human)   78 18
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   36 8
PDB_chains_(SCOP_1.75)_(PDB) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 15 15
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 40 40
STRING_v9.0.5_(STRING) 940 217
Uniprot_2018_03_genome 9135 2165
NCBI_2017_08_genome 17635 3982
TargetDB__(Targets) 6 3

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