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Domain combinations for TNF receptor-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a TNF receptor-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   153 80
Pan_troglodytes_76_2.1.4   (Chimpanzee)   46 20
Gorilla_gorilla_76_3.1   (Western gorilla)   66 31
Pongo_abelii_76_2   (Sumatran orangutan)   45 22
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   38 20
Papio_anubis_76   (Olive baboon)   53 24
Macaca_mulatta_76_1   (Rhesus monkey)   74 35
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   93 48
Otolemur_garnettii_76_3   (Small-eared galago)   40 19
Microcebus_murinus_76_1   (Gray mouse lemur)   30 17
Rattus_norvegicus_76_5.0   (Norway rat)   47 26
Mus_musculus_76_38   (House mouse)   88 53
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   24 14
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   42 20
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   37 20
Cavia_porcellus_76_3   (Domestic guinea pig)   49 24
Oryctolagus_cuniculus_76_2   (Rabbit)   37 20
Ochotona_princeps_76   (American pika)   29 15
Tupaia_belangeri_76   (Northern tree shrew)   26 15
Sus_scrofa_76_10.2   (Pig)   78 40
Bos_taurus_76_3.1   (Cattle)   53 24
Ovis_aries_76_3.1   (Sheep)   42 23
Vicugna_pacos_76_1   (Alpaca)   10 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   36 20
Mustela_putorius_furo_76_1.0   (Domestic ferret)   41 19
Ailuropoda_melanoleuca_76_1   (Giant panda)   42 20
Canis_familiaris_76_3.1   (Dog)   54 27
Felis_catus_76_6.2   (Domestic cat)   42 22
Equus_caballus_76_2   (Horse)   49 23
Myotis_lucifugus_76_2.0   (Little brown bat)   51 23
Pteropus_vampyrus_76_1   (Large flying fox)   35 20
Sorex_araneus_76_1   (European shrew)   8 6
Erinaceus_europaeus_76   (Western European hedgehog)   13 9
Procavia_capensis_76_1   (Cape rock hyrax)   28 15
Loxodonta_africana_76_3   (African savanna elephant)   57 34
Echinops_telfairi_76   (Small Madagascar hedgehog)   19 12
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   44 21
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   8 6
Macropus_eugenii_76_1.0   (Tammar wallaby)   21 11
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   52 26
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   44 22
Ornithorhynchus_anatinus_76_5   (Platypus)   35 18
Saccoglossus_kowalevskii_v3.0 30 21
Petromyzon_marinus_76_7.0   (Sea lamprey)   11 6
Meleagris_gallopavo_76_2   (Turkey)   37 19
Gallus_gallus_76_4   (Chicken)   32 18
Anas_platyrhynchos_76_1.0   (Mallard)   38 18
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   32 18
Ficedula_albicollis_76_1.0   (Collared flycatcher)   42 22
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   34 19
Anolis_carolinensis_76_2.0   (Green anole)   28 15
Xenopus_laevis_   (African clawed frog)   57 26
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   31 15
Latimeria_chalumnae_76_1   (Coelacanth)   45 24
Lepisosteus_oculatus_76   (Spotted gar)   53 30
Gadus_morhua_76_1   (Atlantic cod)   84 40
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   34 16
Takifugu_rubripes_76_4   (Torafugu)   87 38
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   47 26
Oryzias_latipes_76_1   (Japanese medaka)   46 24
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   49 27
Poecilia_formosa_76   (Amazon molly)   52 26
Oreochromis_niloticus_76_1.0   (Nile tilapia)   76 34
Astyanax_mexicanus_76   (Mexican tetra)   49 24
Danio_rerio_76_9   (Zebrafish)   94 44
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_76   (Vase tunicate)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   8 6
Adineta_vaga 1 1
Octopus_bimaculoides_280 3 2
Crassostrea_gigas_22   (Pacific oyster)   9 7
Lottia_gigantea_   (Owl limpet)   30 17
Helobdella_robusta_ 1 1
Capitella_sp._I_ 6 4
Linepithema_humile_v1.1   (Argentine ant)   2 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 1
Atta_cephalotes_v1.1 2 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Daphnia_pulex_   (Common water flea)   2 1
Strigamia_maritima_22 1 1
Sarcoptes_scabiei 1 1
Pristionchus_pacificus_ 1 1
Trichinella_spiralis_22 2 1
Hymenolepis_microstoma_ 3 2
Echinococcus_multilocularis_ 3 2
Echinococcus_granulosus_ 3 2
Taenia_solium_   (Pork tapeworm)   3 2
Schistosoma_mansoni_ 2 1
Mnemiopsis_leidyi   (Sea walnut)   1 1
Acropora_digitifera_v1.0 8 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   9 8
Hydra_vulgaris 1 1
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 1 1
Proterospongia_sp._ATCC_50818_ 76 37
Monosiga_brevicollis_ 21 13
Chlorella_variabilis_sp._NC64A_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Cyanophora_paradoxa_ 3 3
Pythium_arrhenomanes_ATCC_12531_22 2 2
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Tetrahymena_thermophila_SB210_1_ 5 5
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 1 1
Sorangium_cellulosum_'So_ce_56' 3 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   47 22
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   52 24
Pan_troglodytes_69_2.1.4   (Chimpanzee)   45 19
Gorilla_gorilla_69_3.1   (Western gorilla)   47 22
Pongo_abelii_69_2   (Sumatran orangutan)   45 22
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   38 20
Macaca_mulatta_69_1   (Rhesus monkey)   47 22
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   44 22
Otolemur_garnettii_69_3   (Small-eared galago)   38 18
Microcebus_murinus_69_1   (Gray mouse lemur)   30 17
Rattus_norvegicus_69_3.4   (Norway rat)   46 25
Mus_musculus_69_38   (House mouse)   45 23
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   24 14
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   36 17
Cavia_porcellus_69_3   (Domestic guinea pig)   46 23
Oryctolagus_cuniculus_69_2   (Rabbit)   34 19
Ochotona_princeps_69   (American pika)   29 15
Tupaia_belangeri_69   (Northern tree shrew)   26 15
Sus_scrofa_69_10.2   (Pig)   51 24
Bos_taurus_69_3.1   (Cattle)   48 22
Vicugna_pacos_69_1   (Alpaca)   10 7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   36 20
Mustela_putorius_furo_69_1.0   (Domestic ferret)   41 19
Ailuropoda_melanoleuca_69_1   (Giant panda)   39 18
Canis_familiaris_69_3.1   (Dog)   39 19
Felis_catus_69   (Domestic cat)   31 17
Equus_caballus_69_2   (Horse)   42 20
Myotis_lucifugus_69_2.0   (Little brown bat)   49 22
Pteropus_vampyrus_69_1   (Large flying fox)   35 20
Sorex_araneus_69_1   (European shrew)   8 6
Erinaceus_europaeus_69   (Western European hedgehog)   13 9
Procavia_capensis_69_1   (Cape rock hyrax)   28 15
Loxodonta_africana_69_3   (African savanna elephant)   41 21
Echinops_telfairi_69   (Small Madagascar hedgehog)   19 12
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   13 7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   8 6
Macropus_eugenii_69_1.0   (Tammar wallaby)   21 11
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   42 22
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   33 18
Ornithorhynchus_anatinus_69_5   (Platypus)   31 16
Petromyzon_marinus_69_7.0   (Sea lamprey)   11 6
Meleagris_gallopavo_69_2   (Turkey)   26 14
Gallus_gallus_69_2   (Chicken)   31 15
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   30 17
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   29 16
Anolis_carolinensis_69_2.0   (Green anole)   22 11
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   25 12
Latimeria_chalumnae_69_1   (Coelacanth)   37 20
Gadus_morhua_69_1   (Atlantic cod)   34 17
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   31 15
Takifugu_rubripes_69_4   (Torafugu)   32 15
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   38 20
Oryzias_latipes_69_1   (Japanese medaka)   41 21
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   49 27
Oreochromis_niloticus_69_1.0   (Nile tilapia)   54 25
Danio_rerio_69_9   (Zebrafish)   71 33
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   136 74
Homo_sapiens__(NCBI_version)   (Human)   69 33
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   45 23
PDB_chains_(SCOP_1.75)_(PDB) 36 16
Protein_Data_Bank_(all_PDB_sequenc) 411 229
UniProt__viral_sequences_(Viral) 451 308
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 739 703
STRING_v9.0.5_(STRING) 1030 526
TargetDB__(Targets) 27 14
Uniprot_2018_03_genome 9605 5117
Protozoadb_2010_08_(Protozoadb) 6 6
NCBI_2017_08_genome 16104 8391
NCBI_viral_sequences_(Viral) 85 54

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