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Domain combinations for FnI-like domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a FnI-like domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   383 107
Pan_troglodytes_76_2.1.4   (Chimpanzee)   68 29
Gorilla_gorilla_76_3.1   (Western gorilla)   125 45
Pongo_abelii_76_2   (Sumatran orangutan)   89 33
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   91 32
Papio_anubis_76   (Olive baboon)   98 30
Macaca_mulatta_76_1   (Rhesus monkey)   238 57
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   257 100
Otolemur_garnettii_76_3   (Small-eared galago)   79 28
Microcebus_murinus_76_1   (Gray mouse lemur)   66 27
Rattus_norvegicus_76_5.0   (Norway rat)   125 42
Mus_musculus_76_38   (House mouse)   258 68
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   67 29
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   87 32
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   73 31
Cavia_porcellus_76_3   (Domestic guinea pig)   96 37
Oryctolagus_cuniculus_76_2   (Rabbit)   106 38
Ochotona_princeps_76   (American pika)   63 25
Tupaia_belangeri_76   (Northern tree shrew)   42 23
Sus_scrofa_76_10.2   (Pig)   144 43
Bos_taurus_76_3.1   (Cattle)   154 37
Ovis_aries_76_3.1   (Sheep)   113 39
Vicugna_pacos_76_1   (Alpaca)   44 21
Tursiops_truncatus_76_1   (Bottlenose dolphin)   78 28
Mustela_putorius_furo_76_1.0   (Domestic ferret)   96 35
Ailuropoda_melanoleuca_76_1   (Giant panda)   110 42
Canis_familiaris_76_3.1   (Dog)   144 52
Felis_catus_76_6.2   (Domestic cat)   101 37
Equus_caballus_76_2   (Horse)   146 47
Myotis_lucifugus_76_2.0   (Little brown bat)   109 33
Pteropus_vampyrus_76_1   (Large flying fox)   80 32
Sorex_araneus_76_1   (European shrew)   36 20
Erinaceus_europaeus_76   (Western European hedgehog)   39 18
Procavia_capensis_76_1   (Cape rock hyrax)   60 31
Loxodonta_africana_76_3   (African savanna elephant)   110 42
Echinops_telfairi_76   (Small Madagascar hedgehog)   60 29
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   91 39
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   39 17
Macropus_eugenii_76_1.0   (Tammar wallaby)   40 21
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   95 44
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   82 35
Ornithorhynchus_anatinus_76_5   (Platypus)   85 41
Saccoglossus_kowalevskii_v3.0 266 96
Petromyzon_marinus_76_7.0   (Sea lamprey)   47 24
Meleagris_gallopavo_76_2   (Turkey)   65 39
Gallus_gallus_76_4   (Chicken)   82 30
Anas_platyrhynchos_76_1.0   (Mallard)   65 31
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   68 34
Ficedula_albicollis_76_1.0   (Collared flycatcher)   76 37
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   70 35
Anolis_carolinensis_76_2.0   (Green anole)   96 36
Xenopus_laevis_   (African clawed frog)   225 64
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   162 50
Latimeria_chalumnae_76_1   (Coelacanth)   114 49
Lepisosteus_oculatus_76   (Spotted gar)   174 58
Gadus_morhua_76_1   (Atlantic cod)   84 39
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   190 59
Takifugu_rubripes_76_4   (Torafugu)   363 145
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   104 55
Oryzias_latipes_76_1   (Japanese medaka)   110 48
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   106 39
Poecilia_formosa_76   (Amazon molly)   113 45
Oreochromis_niloticus_76_1.0   (Nile tilapia)   161 55
Astyanax_mexicanus_76   (Mexican tetra)   105 46
Danio_rerio_76_9   (Zebrafish)   195 80
Oikopleura_dioica 11 8
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   117 45
Ciona_intestinalis_76   (Vase tunicate)   60 24
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   124 36
Adineta_vaga 24 5
Octopus_bimaculoides_280 555 83
Crassostrea_gigas_22   (Pacific oyster)   121 40
Lottia_gigantea_   (Owl limpet)   84 33
Helobdella_robusta_ 7 5
Capitella_sp._I_ 29 15
Danaus_plexippus_OGS1.0   (Monarch butterfly)   23 9
Heliconius_melpomene_   (Postman butterfly)   20 7
Bombyx_mori_   (Domestic silkworm)   16 10
Nasonia_vitripennis_   (Jewel wasp)   27 7
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   42 13
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   21 8
Linepithema_humile_v1.1   (Argentine ant)   21 8
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   19 9
Solenopsis_invicta_v.2.2.3   (Red fire ant)   19 10
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   24 8
Atta_cephalotes_v1.1 22 10
Camponotus_floridanus_v3.3   (Florida carpenter ant)   24 8
Lucilia_cuprina   (Australian sheep blowfly)   23 9
Drosophila_grimshawi_1.3 26 13
Drosophila_willistoni_1.3 27 13
Drosophila_pseudoobscura_2.13 23 13
Drosophila_persimilis_1.3 25 11
Drosophila_suzukii 23 9
Drosophila_yakuba_1.3 25 13
Drosophila_simulans_1.3 20 11
Drosophila_sechellia_1.3 25 13
Drosophila_melanogaster_76_5   (Fruit fly)   51 24
Drosophila_erecta_1.3 27 13
Drosophila_ananassae_1.3 27 14
Drosophila_virilis_1.2 26 12
Drosophila_mojavensis_1.3 28 14
Megaselia_scalaris_22 7 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   23 12
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   29 15
Anopheles_darlingi_22   (American malaria mosquito)   17 12
Anopheles_gambiae_49_3j   (African malaria mosquito)   24 11
Tribolium_castaneum_3.0   (Red flour beetle)   29 12
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   25 11
Acyrthosiphon_pisum_   (Pea aphid)   18 6
Rhodnius_prolixus_22 29 10
Daphnia_pulex_   (Common water flea)   30 18
Strigamia_maritima_22 34 17
Sarcoptes_scabiei 13 5
Tetranychus_urticae_   (Two-spotted spider mite)   31 14
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   25 9
Pristionchus_pacificus_ 9 4
Meloidogyne_incognita_   (Southern root-knot nematode)   5 3
Meloidogyne_hapla_ 7 2
Onchocerca_volvulus_22 7 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7 2
Caenorhabditis_japonica_ 7 2
Caenorhabditis_brenneri_ 6 2
Caenorhabditis_remanei_ 7 3
Caenorhabditis_elegans_76_235   (Roundworm)   31 8
Caenorhabditis_briggsae_2 6 2
Trichinella_spiralis_22 10 5
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 2 2
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   39 21
Acropora_digitifera_v1.0 23 15
Nematostella_vectensis_1.0   (Starlet sea anemone)   18 12
Hydra_vulgaris 10 6
Amphimedon_queenslandica 7 4
Trichoplax_adhaerens_ 30 4
Sorangium_cellulosum_'So_ce_56' 2 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   153 60
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   28 19
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   25 12
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10 4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   24 6
Sorangium_cellulosum_So0157-2 4 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   84 35
Pan_troglodytes_69_2.1.4   (Chimpanzee)   68 29
Gorilla_gorilla_69_3.1   (Western gorilla)   102 38
Pongo_abelii_69_2   (Sumatran orangutan)   73 30
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   79 31
Macaca_mulatta_69_1   (Rhesus monkey)   73 26
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   91 36
Otolemur_garnettii_69_3   (Small-eared galago)   79 28
Microcebus_murinus_69_1   (Gray mouse lemur)   66 27
Rattus_norvegicus_69_3.4   (Norway rat)   90 34
Mus_musculus_69_38   (House mouse)   94 33
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   67 29
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   81 30
Cavia_porcellus_69_3   (Domestic guinea pig)   96 37
Oryctolagus_cuniculus_69_2   (Rabbit)   91 34
Ochotona_princeps_69   (American pika)   63 25
Tupaia_belangeri_69   (Northern tree shrew)   42 23
Sus_scrofa_69_10.2   (Pig)   84 29
Bos_taurus_69_3.1   (Cattle)   92 32
Vicugna_pacos_69_1   (Alpaca)   44 21
Tursiops_truncatus_69_1   (Bottlenose dolphin)   78 28
Mustela_putorius_furo_69_1.0   (Domestic ferret)   96 35
Ailuropoda_melanoleuca_69_1   (Giant panda)   94 37
Canis_familiaris_69_3.1   (Dog)   101 38
Felis_catus_69   (Domestic cat)   48 24
Equus_caballus_69_2   (Horse)   93 33
Myotis_lucifugus_69_2.0   (Little brown bat)   71 28
Pteropus_vampyrus_69_1   (Large flying fox)   80 32
Sorex_araneus_69_1   (European shrew)   36 20
Erinaceus_europaeus_69   (Western European hedgehog)   39 18
Procavia_capensis_69_1   (Cape rock hyrax)   60 31
Loxodonta_africana_69_3   (African savanna elephant)   87 31
Echinops_telfairi_69   (Small Madagascar hedgehog)   60 29
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   47 26
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   39 17
Macropus_eugenii_69_1.0   (Tammar wallaby)   40 21
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   85 36
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   80 33
Ornithorhynchus_anatinus_69_5   (Platypus)   75 39
Petromyzon_marinus_69_7.0   (Sea lamprey)   42 19
Meleagris_gallopavo_69_2   (Turkey)   58 32
Gallus_gallus_69_2   (Chicken)   62 30
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   66 32
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   65 32
Anolis_carolinensis_69_2.0   (Green anole)   92 36
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   102 39
Latimeria_chalumnae_69_1   (Coelacanth)   101 42
Gadus_morhua_69_1   (Atlantic cod)   80 35
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   95 34
Takifugu_rubripes_69_4   (Torafugu)   97 36
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   87 40
Oryzias_latipes_69_1   (Japanese medaka)   91 35
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   106 39
Oreochromis_niloticus_69_1.0   (Nile tilapia)   105 41
Danio_rerio_69_9   (Zebrafish)   120 51
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   52 18
Ciona_intestinalis_69   (Vase tunicate)   49 21
Drosophila_melanogaster_69_5   (Fruit fly)   26 12
Caenorhabditis_elegans_69_215   (Roundworm)   7 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   363 114
Homo_sapiens__(NCBI_version)   (Human)   201 59
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   95 33
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   8 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   6 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 1
Protein_Data_Bank_(all_PDB_sequenc) 83 50
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 179 179
PDB_chains_(SCOP_1.75)_(PDB) 13 9
UniProt__viral_sequences_(Viral) 19 19
TargetDB__(Targets) 39 21
STRING_v9.0.5_(STRING) 2925 1172
Uniprot_2018_03_genome 27002 10540
NCBI_2017_08_genome 52215 16311

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