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Domain combinations for Thyroglobulin type-1 domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Thyroglobulin type-1 domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   75 55
Pan_troglodytes_76_2.1.4   (Chimpanzee)   22 16
Gorilla_gorilla_76_3.1   (Western gorilla)   44 21
Pongo_abelii_76_2   (Sumatran orangutan)   27 15
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   24 16
Papio_anubis_76   (Olive baboon)   35 22
Macaca_mulatta_76_1   (Rhesus monkey)   27 23
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   56 40
Otolemur_garnettii_76_3   (Small-eared galago)   31 18
Microcebus_murinus_76_1   (Gray mouse lemur)   27 15
Rattus_norvegicus_76_5.0   (Norway rat)   30 17
Mus_musculus_76_38   (House mouse)   47 32
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   23 15
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   30 17
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   31 17
Cavia_porcellus_76_3   (Domestic guinea pig)   29 18
Oryctolagus_cuniculus_76_2   (Rabbit)   22 19
Ochotona_princeps_76   (American pika)   26 14
Tupaia_belangeri_76   (Northern tree shrew)   22 12
Sus_scrofa_76_10.2   (Pig)   42 20
Bos_taurus_76_3.1   (Cattle)   27 15
Ovis_aries_76_3.1   (Sheep)   26 20
Vicugna_pacos_76_1   (Alpaca)   6 5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   26 16
Mustela_putorius_furo_76_1.0   (Domestic ferret)   30 17
Ailuropoda_melanoleuca_76_1   (Giant panda)   29 19
Canis_familiaris_76_3.1   (Dog)   45 21
Felis_catus_76_6.2   (Domestic cat)   29 16
Equus_caballus_76_2   (Horse)   28 15
Myotis_lucifugus_76_2.0   (Little brown bat)   26 14
Pteropus_vampyrus_76_1   (Large flying fox)   28 16
Sorex_araneus_76_1   (European shrew)   17 10
Erinaceus_europaeus_76   (Western European hedgehog)   21 13
Procavia_capensis_76_1   (Cape rock hyrax)   25 16
Loxodonta_africana_76_3   (African savanna elephant)   33 19
Echinops_telfairi_76   (Small Madagascar hedgehog)   26 15
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   35 22
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   16 8
Macropus_eugenii_76_1.0   (Tammar wallaby)   24 14
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   27 14
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   28 17
Ornithorhynchus_anatinus_76_5   (Platypus)   24 13
Saccoglossus_kowalevskii_v3.0 234 55
Petromyzon_marinus_76_7.0   (Sea lamprey)   16 8
Meleagris_gallopavo_76_2   (Turkey)   15 14
Gallus_gallus_76_4   (Chicken)   28 16
Anas_platyrhynchos_76_1.0   (Mallard)   27 15
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   24 16
Ficedula_albicollis_76_1.0   (Collared flycatcher)   29 15
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   31 18
Anolis_carolinensis_76_2.0   (Green anole)   32 18
Xenopus_laevis_   (African clawed frog)   31 23
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   30 18
Latimeria_chalumnae_76_1   (Coelacanth)   28 19
Lepisosteus_oculatus_76   (Spotted gar)   39 22
Gadus_morhua_76_1   (Atlantic cod)   31 24
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   26 24
Takifugu_rubripes_76_4   (Torafugu)   144 108
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   38 34
Oryzias_latipes_76_1   (Japanese medaka)   44 31
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   32 22
Poecilia_formosa_76   (Amazon molly)   26 20
Oreochromis_niloticus_76_1.0   (Nile tilapia)   46 32
Astyanax_mexicanus_76   (Mexican tetra)   32 21
Danio_rerio_76_9   (Zebrafish)   61 36
Oikopleura_dioica 21 15
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   15 10
Ciona_intestinalis_76   (Vase tunicate)   14 9
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   21 10
Octopus_bimaculoides_280 14 12
Crassostrea_gigas_22   (Pacific oyster)   9 6
Lottia_gigantea_   (Owl limpet)   7 4
Helobdella_robusta_ 5 5
Capitella_sp._I_ 3 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   18 7
Heliconius_melpomene_   (Postman butterfly)   14 6
Bombyx_mori_   (Domestic silkworm)   10 5
Nasonia_vitripennis_   (Jewel wasp)   13 4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   11 4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   9 3
Linepithema_humile_v1.1   (Argentine ant)   6 4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   5 4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   9 3
Atta_cephalotes_v1.1 5 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9 4
Lucilia_cuprina   (Australian sheep blowfly)   9 3
Drosophila_grimshawi_1.3 9 3
Drosophila_willistoni_1.3 9 3
Drosophila_pseudoobscura_2.13 9 3
Drosophila_persimilis_1.3 8 3
Drosophila_suzukii 9 4
Drosophila_yakuba_1.3 9 3
Drosophila_simulans_1.3 9 3
Drosophila_sechellia_1.3 9 3
Drosophila_melanogaster_76_5   (Fruit fly)   18 8
Drosophila_erecta_1.3 8 2
Drosophila_ananassae_1.3 9 3
Drosophila_virilis_1.2 9 3
Drosophila_mojavensis_1.3 9 3
Megaselia_scalaris_22 5 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   16 6
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   14 5
Anopheles_darlingi_22   (American malaria mosquito)   7 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   22 8
Tribolium_castaneum_3.0   (Red flour beetle)   14 5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4 3
Acyrthosiphon_pisum_   (Pea aphid)   3 2
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   18 7
Strigamia_maritima_22 27 8
Sarcoptes_scabiei 10 5
Tetranychus_urticae_   (Two-spotted spider mite)   13 5
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8 4
Pristionchus_pacificus_ 8 6
Meloidogyne_incognita_   (Southern root-knot nematode)   4 4
Onchocerca_volvulus_22 8 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   10 9
Caenorhabditis_japonica_ 12 6
Caenorhabditis_brenneri_ 4 4
Caenorhabditis_remanei_ 14 7
Caenorhabditis_elegans_76_235   (Roundworm)   24 18
Caenorhabditis_briggsae_2 13 7
Trichinella_spiralis_22 11 8
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   62 16
Acropora_digitifera_v1.0 83 9
Nematostella_vectensis_1.0   (Starlet sea anemone)   49 19
Hydra_vulgaris 14 7
Amphimedon_queenslandica 9 4
Trichoplax_adhaerens_ 6 2
Symbiodinium_minutum_clade_B1_v1.2 3 3
Coxiella_burnetii_Dugway_5J108-111 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   39 25
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   18 8
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   23 9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10 5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   17 11
Coxiella_burnetii_CbuK_Q154 1 1
Coxiella_burnetii_CbuG_Q212 1 1
Coxiella_burnetii_RSA_331 1 1
Coxiella_burnetii_RSA_493 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   31 18
Pan_troglodytes_69_2.1.4   (Chimpanzee)   22 16
Gorilla_gorilla_69_3.1   (Western gorilla)   28 15
Pongo_abelii_69_2   (Sumatran orangutan)   27 15
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   24 17
Macaca_mulatta_69_1   (Rhesus monkey)   21 18
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   29 17
Otolemur_garnettii_69_3   (Small-eared galago)   31 18
Microcebus_murinus_69_1   (Gray mouse lemur)   27 15
Rattus_norvegicus_69_3.4   (Norway rat)   30 17
Mus_musculus_69_38   (House mouse)   31 18
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   23 15
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   30 17
Cavia_porcellus_69_3   (Domestic guinea pig)   28 17
Oryctolagus_cuniculus_69_2   (Rabbit)   21 18
Ochotona_princeps_69   (American pika)   26 14
Tupaia_belangeri_69   (Northern tree shrew)   22 12
Sus_scrofa_69_10.2   (Pig)   30 18
Bos_taurus_69_3.1   (Cattle)   27 15
Vicugna_pacos_69_1   (Alpaca)   6 5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   26 16
Mustela_putorius_furo_69_1.0   (Domestic ferret)   30 17
Ailuropoda_melanoleuca_69_1   (Giant panda)   22 17
Canis_familiaris_69_3.1   (Dog)   40 17
Felis_catus_69   (Domestic cat)   24 15
Equus_caballus_69_2   (Horse)   27 14
Myotis_lucifugus_69_2.0   (Little brown bat)   26 14
Pteropus_vampyrus_69_1   (Large flying fox)   28 16
Sorex_araneus_69_1   (European shrew)   17 10
Erinaceus_europaeus_69   (Western European hedgehog)   21 13
Procavia_capensis_69_1   (Cape rock hyrax)   25 16
Loxodonta_africana_69_3   (African savanna elephant)   30 17
Echinops_telfairi_69   (Small Madagascar hedgehog)   26 15
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   19 15
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   16 8
Macropus_eugenii_69_1.0   (Tammar wallaby)   24 14
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   24 12
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   28 17
Ornithorhynchus_anatinus_69_5   (Platypus)   22 11
Petromyzon_marinus_69_7.0   (Sea lamprey)   16 8
Meleagris_gallopavo_69_2   (Turkey)   14 13
Gallus_gallus_69_2   (Chicken)   27 15
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   24 16
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   27 15
Anolis_carolinensis_69_2.0   (Green anole)   30 17
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   26 14
Latimeria_chalumnae_69_1   (Coelacanth)   21 14
Gadus_morhua_69_1   (Atlantic cod)   25 21
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   25 23
Takifugu_rubripes_69_4   (Torafugu)   34 22
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   27 23
Oryzias_latipes_69_1   (Japanese medaka)   34 22
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   32 22
Oreochromis_niloticus_69_1.0   (Nile tilapia)   37 25
Danio_rerio_69_9   (Zebrafish)   33 23
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   8 6
Ciona_intestinalis_69   (Vase tunicate)   14 9
Drosophila_melanogaster_69_5   (Fruit fly)   9 3
Caenorhabditis_elegans_69_215   (Roundworm)   12 6

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   84 56
Homo_sapiens__(NCBI_version)   (Human)   42 27
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   30 17
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   8 7
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5 5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4 4
Protein_Data_Bank_(all_PDB_sequenc) 12 12
PDB_chains_(SCOP_1.75)_(PDB) 5 5
TargetDB__(Targets) 9 8
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 29 29
STRING_v9.0.5_(STRING) 1067 602
Uniprot_2018_03_genome 13614 6094
NCBI_2017_08_genome 14400 7232

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