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Domain combinations for GLA-domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a GLA-domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   39 39
Pan_troglodytes_76_2.1.4   (Chimpanzee)   14 14
Gorilla_gorilla_76_3.1   (Western gorilla)   19 19
Pongo_abelii_76_2   (Sumatran orangutan)   12 12
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   12 12
Papio_anubis_76   (Olive baboon)   15 15
Macaca_mulatta_76_1   (Rhesus monkey)   16 16
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   23 23
Otolemur_garnettii_76_3   (Small-eared galago)   11 11
Microcebus_murinus_76_1   (Gray mouse lemur)   9 9
Rattus_norvegicus_76_5.0   (Norway rat)   15 15
Mus_musculus_76_38   (House mouse)   32 32
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10 10
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   13 13
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   15 15
Cavia_porcellus_76_3   (Domestic guinea pig)   13 13
Oryctolagus_cuniculus_76_2   (Rabbit)   9 9
Ochotona_princeps_76   (American pika)   6 6
Tupaia_belangeri_76   (Northern tree shrew)   4 4
Sus_scrofa_76_10.2   (Pig)   14 14
Bos_taurus_76_3.1   (Cattle)   12 12
Ovis_aries_76_3.1   (Sheep)   14 14
Vicugna_pacos_76_1   (Alpaca)   5 5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   12 12
Mustela_putorius_furo_76_1.0   (Domestic ferret)   10 10
Ailuropoda_melanoleuca_76_1   (Giant panda)   15 15
Canis_familiaris_76_3.1   (Dog)   14 14
Felis_catus_76_6.2   (Domestic cat)   12 12
Equus_caballus_76_2   (Horse)   13 13
Myotis_lucifugus_76_2.0   (Little brown bat)   15 15
Pteropus_vampyrus_76_1   (Large flying fox)   11 11
Sorex_araneus_76_1   (European shrew)   7 7
Erinaceus_europaeus_76   (Western European hedgehog)   5 5
Procavia_capensis_76_1   (Cape rock hyrax)   8 8
Loxodonta_africana_76_3   (African savanna elephant)   18 18
Echinops_telfairi_76   (Small Madagascar hedgehog)   11 11
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   12 12
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5 5
Macropus_eugenii_76_1.0   (Tammar wallaby)   7 7
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   14 14
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   14 14
Ornithorhynchus_anatinus_76_5   (Platypus)   10 10
Saccoglossus_kowalevskii_v3.0 1 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   6 6
Meleagris_gallopavo_76_2   (Turkey)   13 13
Gallus_gallus_76_4   (Chicken)   13 13
Anas_platyrhynchos_76_1.0   (Mallard)   13 13
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   13 13
Ficedula_albicollis_76_1.0   (Collared flycatcher)   15 15
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   15 15
Anolis_carolinensis_76_2.0   (Green anole)   12 12
Xenopus_laevis_   (African clawed frog)   39 39
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   18 18
Latimeria_chalumnae_76_1   (Coelacanth)   20 20
Lepisosteus_oculatus_76   (Spotted gar)   20 20
Gadus_morhua_76_1   (Atlantic cod)   16 16
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   28 28
Takifugu_rubripes_76_4   (Torafugu)   81 81
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   26 26
Oryzias_latipes_76_1   (Japanese medaka)   17 17
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   18 18
Poecilia_formosa_76   (Amazon molly)   16 15
Oreochromis_niloticus_76_1.0   (Nile tilapia)   17 17
Astyanax_mexicanus_76   (Mexican tetra)   18 18
Danio_rerio_76_9   (Zebrafish)   38 38
Oikopleura_dioica 8 8
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_76   (Vase tunicate)   6 6
Acropora_digitifera_v1.0 2 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   33 33

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   15 15
Pan_troglodytes_69_2.1.4   (Chimpanzee)   14 14
Gorilla_gorilla_69_3.1   (Western gorilla)   13 13
Pongo_abelii_69_2   (Sumatran orangutan)   12 12
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   12 12
Macaca_mulatta_69_1   (Rhesus monkey)   11 11
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   13 13
Otolemur_garnettii_69_3   (Small-eared galago)   11 11
Microcebus_murinus_69_1   (Gray mouse lemur)   9 9
Rattus_norvegicus_69_3.4   (Norway rat)   13 13
Mus_musculus_69_38   (House mouse)   16 16
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10 10
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   13 13
Cavia_porcellus_69_3   (Domestic guinea pig)   13 13
Oryctolagus_cuniculus_69_2   (Rabbit)   9 9
Ochotona_princeps_69   (American pika)   6 6
Tupaia_belangeri_69   (Northern tree shrew)   4 4
Sus_scrofa_69_10.2   (Pig)   13 13
Bos_taurus_69_3.1   (Cattle)   12 12
Vicugna_pacos_69_1   (Alpaca)   5 5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   12 12
Mustela_putorius_furo_69_1.0   (Domestic ferret)   10 10
Ailuropoda_melanoleuca_69_1   (Giant panda)   14 14
Canis_familiaris_69_3.1   (Dog)   12 12
Felis_catus_69   (Domestic cat)   7 7
Equus_caballus_69_2   (Horse)   13 13
Myotis_lucifugus_69_2.0   (Little brown bat)   15 15
Pteropus_vampyrus_69_1   (Large flying fox)   11 11
Sorex_araneus_69_1   (European shrew)   7 7
Erinaceus_europaeus_69   (Western European hedgehog)   5 5
Procavia_capensis_69_1   (Cape rock hyrax)   8 8
Loxodonta_africana_69_3   (African savanna elephant)   15 15
Echinops_telfairi_69   (Small Madagascar hedgehog)   11 11
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   6 6
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5 5
Macropus_eugenii_69_1.0   (Tammar wallaby)   7 7
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   12 12
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   13 13
Ornithorhynchus_anatinus_69_5   (Platypus)   10 10
Petromyzon_marinus_69_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_69_2   (Turkey)   11 11
Gallus_gallus_69_2   (Chicken)   12 12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   12 12
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   12 12
Anolis_carolinensis_69_2.0   (Green anole)   9 9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   15 15
Latimeria_chalumnae_69_1   (Coelacanth)   13 13
Gadus_morhua_69_1   (Atlantic cod)   16 16
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   19 19
Takifugu_rubripes_69_4   (Torafugu)   16 16
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   17 17
Oryzias_latipes_69_1   (Japanese medaka)   12 12
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   18 18
Oreochromis_niloticus_69_1.0   (Nile tilapia)   15 15
Danio_rerio_69_9   (Zebrafish)   21 21
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   4 4

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   50 50
Homo_sapiens__(NCBI_version)   (Human)   20 20
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   16 16
PDB_chains_(SCOP_1.75)_(PDB) 18 18
Protein_Data_Bank_(all_PDB_sequenc) 110 110
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 111 111
STRING_v9.0.5_(STRING) 317 317
Uniprot_2018_03_genome 2593 2574
NCBI_2017_08_genome 4916 4875

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