SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for beta-beta-alpha zinc fingers superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a beta-beta-alpha zinc fingers domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   10873 2243
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3948 743
Gorilla_gorilla_76_3.1   (Western gorilla)   4906 944
Pongo_abelii_76_2   (Sumatran orangutan)   3610 708
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4053 744
Papio_anubis_76   (Olive baboon)   4383 764
Macaca_mulatta_76_1   (Rhesus monkey)   6298 1208
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   7038 1369
Otolemur_garnettii_76_3   (Small-eared galago)   3626 651
Microcebus_murinus_76_1   (Gray mouse lemur)   2020 471
Rattus_norvegicus_76_5.0   (Norway rat)   2770 620
Mus_musculus_76_38   (House mouse)   6284 1346
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1411 357
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1796 442
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2928 594
Cavia_porcellus_76_3   (Domestic guinea pig)   1518 400
Oryctolagus_cuniculus_76_2   (Rabbit)   2337 510
Ochotona_princeps_76   (American pika)   1450 368
Tupaia_belangeri_76   (Northern tree shrew)   1530 376
Sus_scrofa_76_10.2   (Pig)   2758 594
Bos_taurus_76_3.1   (Cattle)   3268 640
Ovis_aries_76_3.1   (Sheep)   2282 526
Vicugna_pacos_76_1   (Alpaca)   1376 329
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2473 538
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2547 539
Ailuropoda_melanoleuca_76_1   (Giant panda)   2526 567
Canis_familiaris_76_3.1   (Dog)   3120 672
Felis_catus_76_6.2   (Domestic cat)   2017 478
Equus_caballus_76_2   (Horse)   3828 689
Myotis_lucifugus_76_2.0   (Little brown bat)   1720 443
Pteropus_vampyrus_76_1   (Large flying fox)   2124 485
Sorex_araneus_76_1   (European shrew)   1119 297
Erinaceus_europaeus_76   (Western European hedgehog)   1184 323
Procavia_capensis_76_1   (Cape rock hyrax)   1899 453
Loxodonta_africana_76_3   (African savanna elephant)   2079 535
Echinops_telfairi_76   (Small Madagascar hedgehog)   1956 469
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   4229 826
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1666 390
Macropus_eugenii_76_1.0   (Tammar wallaby)   1226 323
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3509 629
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   6103 870
Ornithorhynchus_anatinus_76_5   (Platypus)   1093 325
Saccoglossus_kowalevskii_v3.0 2230 518
Petromyzon_marinus_76_7.0   (Sea lamprey)   620 197
Meleagris_gallopavo_76_2   (Turkey)   877 272
Gallus_gallus_76_4   (Chicken)   963 283
Anas_platyrhynchos_76_1.0   (Mallard)   860 264
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2478 613
Ficedula_albicollis_76_1.0   (Collared flycatcher)   788 256
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2607 536
Anolis_carolinensis_76_2.0   (Green anole)   6509 851
Xenopus_laevis_   (African clawed frog)   2006 610
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   2705 537
Latimeria_chalumnae_76_1   (Coelacanth)   1231 376
Lepisosteus_oculatus_76   (Spotted gar)   1510 417
Gadus_morhua_76_1   (Atlantic cod)   1205 395
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1265 404
Takifugu_rubripes_76_4   (Torafugu)   4079 996
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1529 424
Oryzias_latipes_76_1   (Japanese medaka)   1745 451
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1689 455
Poecilia_formosa_76   (Amazon molly)   2634 511
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2923 633
Astyanax_mexicanus_76   (Mexican tetra)   2780 539
Danio_rerio_76_9   (Zebrafish)   9699 1867
Oikopleura_dioica 259 153
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1494 215
Ciona_intestinalis_76   (Vase tunicate)   387 143
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1624 331
Adineta_vaga 441 215
Octopus_bimaculoides_280 12514 2144
Crassostrea_gigas_22   (Pacific oyster)   814 264
Lottia_gigantea_   (Owl limpet)   1476 356
Helobdella_robusta_ 593 283
Capitella_sp._I_ 1159 377
Danaus_plexippus_OGS1.0   (Monarch butterfly)   996 303
Heliconius_melpomene_   (Postman butterfly)   803 260
Bombyx_mori_   (Domestic silkworm)   745 318
Nasonia_vitripennis_   (Jewel wasp)   374 127
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1273 373
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   250 149
Linepithema_humile_v1.1   (Argentine ant)   682 272
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   706 274
Solenopsis_invicta_v.2.2.3   (Red fire ant)   641 243
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   683 221
Atta_cephalotes_v1.1 744 287
Camponotus_floridanus_v3.3   (Florida carpenter ant)   548 215
Lucilia_cuprina   (Australian sheep blowfly)   1068 252
Drosophila_grimshawi_1.3 836 291
Drosophila_willistoni_1.3 765 271
Drosophila_pseudoobscura_2.13 866 305
Drosophila_persimilis_1.3 815 288
Drosophila_suzukii 1012 290
Drosophila_yakuba_1.3 852 292
Drosophila_simulans_1.3 705 263
Drosophila_sechellia_1.3 814 293
Drosophila_melanogaster_76_5   (Fruit fly)   1591 560
Drosophila_erecta_1.3 844 289
Drosophila_ananassae_1.3 782 271
Drosophila_virilis_1.2 912 300
Drosophila_mojavensis_1.3 811 278
Megaselia_scalaris_22 261 128
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2227 637
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2138 691
Anopheles_darlingi_22   (American malaria mosquito)   591 220
Anopheles_gambiae_49_3j   (African malaria mosquito)   908 311
Tribolium_castaneum_3.0   (Red flour beetle)   1062 291
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   782 217
Acyrthosiphon_pisum_   (Pea aphid)   966 215
Rhodnius_prolixus_22 694 240
Daphnia_pulex_   (Common water flea)   480 204
Strigamia_maritima_22 581 201
Sarcoptes_scabiei 196 88
Tetranychus_urticae_   (Two-spotted spider mite)   317 146
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   777 296
Pristionchus_pacificus_ 322 194
Meloidogyne_incognita_   (Southern root-knot nematode)   238 167
Meloidogyne_hapla_ 113 76
Onchocerca_volvulus_22 236 112
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   308 159
Caenorhabditis_japonica_ 207 118
Caenorhabditis_brenneri_ 324 168
Caenorhabditis_remanei_ 325 183
Caenorhabditis_elegans_76_235   (Roundworm)   352 190
Caenorhabditis_briggsae_2 257 139
Trichinella_spiralis_22 187 93
Hymenolepis_microstoma_ 273 149
Echinococcus_multilocularis_ 244 122
Echinococcus_granulosus_ 233 120
Taenia_solium_   (Pork tapeworm)   246 133
Schistosoma_mansoni_ 290 139
Mnemiopsis_leidyi   (Sea walnut)   474 187
Thelohanellus_kitauei 64 46
Acropora_digitifera_v1.0 307 114
Nematostella_vectensis_1.0   (Starlet sea anemone)   880 236
Hydra_vulgaris 350 150
Amphimedon_queenslandica 162 112
Trichoplax_adhaerens_ 114 62
Proterospongia_sp._ATCC_50818_ 92 53
Monosiga_brevicollis_ 54 45
Sphaeroforma_arctica_JP610_ 233 90
Capsaspora_owczarzaki_ATCC_30864_ 57 33
Conidiobolus_coronatus_NRRL28638_v1.0 98 80
Mortierella_verticillata_NRRL_6337_ 151 92
Phycomyces_blakesleeanus_ 191 148
Rhizopus_oryzae_RA_99-880_ 170 116
Mucor_circinelloides_ 162 115
Rhizomucor_miehei_CAU432_ 132 92
Malassezia_globosa_CBS_7966_ 64 48
Sporisorium_reilianum_22 54 38
Ustilago_maydis_ 49 34
Mixia_osmundae_IAM_14324_v1.0 48 37
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 60 50
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 93 80
Melampsora_laricis-populina_ 71 60
Rhodotorula_graminis_WP1_v1.0 56 36
Sporobolomyces_roseus_IAM_13481_ 29 24
Microbotryum_violaceum_22 55 40
Wallemia_sebi_v1.0 43 34
Sphaerobolus_stellatus_v1.0 154 130
Piloderma_croceum_F_1598_v1.0 79 61
Serpula_lacrymans_var._lacrymans_S7.9_ 42 32
Coniophora_puteana 55 47
Hydnomerulius_pinastri_v2.0 71 53
Paxillus_rubicundulus_Ve08.2h10_v1.0 67 54
Pisolithus_microcarpus_441_v1.0 81 63
Pisolithus_tinctorius_Marx_270_v1.0 78 62
Scleroderma_citrinum_Foug_A_v1.0 89 71
Coprinopsis_cinerea_okayama7_130_v3 85 60
Pleurotus_ostreatus_   (Oyster mushroom)   73 62
Amanita_thiersii_Skay4041_v1.0 66 48
Amanita_muscaria_Koide_v1.0   (Fly agaric)   100 79
Galerina_marginata_v1.0 74 57
Hebeloma_cylindrosporum_h7_v2.0 71 56
Laccaria_bicolor_S238N-H82_ 75 58
Agaricus_bisporus_var._bisporus_ 57 44
Schizophyllum_commune_ 101 88
Stereum_hirsutum_FP-91666_SS1__v1.0 73 56
Heterobasidion_annosum_ 96 77
Gloeophyllum_trabeumv1.0 67 51
Punctularia_strigosozonata_v1.0 82 67
Sebacina_vermifera_MAFF_305830_v1.0 121 100
Fomitiporia_mediterranea_v1.0 75 58
Tulasnella_calospora_AL13/4D_v1.0 77 67
Postia_placenta_ 131 103
Wolfiporia_cocos_MD-104_SS10__v1.0 73 57
Fomitopsis_pinicolav1.0 80 63
Fomitopsis_pinicola_FP-58527_SS1_v3.0 82 66
Phanerochaete_chrysosporium_RP-78_2.1 56 43
Dichomitus_squalens 73 57
Trametes_versicolor_v1.0 68 52
Tremella_mesenterica_   (Witches' butter)   44 33
Daldinia_eschscholzii_EC12_v1.0 75 62
Apiospora_montagnei_NRRL_25634_v1.0 95 79
Magnaporthe_poae_ATCC_64411_22 64 51
Magnaporthe_grisea_70-15_ 68 53
Podospora_anserina_ 71 55
Sporotrichum_thermophile_ATCC_42464_ 61 51
Thielavia_terrestris_NRRL_8126_ 75 63
Chaetomium_globosum_CBS_148.51_ 58 51
Neurospora_tetrasperma_ 76 60
Neurospora_discreta_FGSC_8579_ 78 60
Neurospora_crassa_OR74A_ 77 62
Cryphonectria_parasitica_   (Chestnut blight fungus)   69 55
Verticillium_albo-atrum_VaMs.102_ 52 43
Verticillium_dahliae_VdLs.17_ 67 56
Acremonium_alcalophilumv_1.0 61 49
Glomerella_graminicola_22 79 61
Fusarium_graminearum_ 76 59
Nectria_haematococca_mpVI_ 94 75
Fusarium_oxysporum_f._sp._lycopersici_4286_ 89 69
Fusarium_verticillioides_7600_ 68 56
Trichoderma_asperellum_CBS_433.97_v1.0 74 62
Trichoderma_atroviride_ 73 57
Trichoderma_citrinoviride_v1.0 67 52
Trichoderma_reesei_1.2 68 51
Trichoderma_virens_Gv29-8_ 84 63
Trichoderma_longibrachiatum_ATCC_18648_v1.0 70 54
Trichoderma_harzianum_CBS_226.95_v1.0 90 75
Amorphotheca_resinae_v1.0   (Creosote fungus)   63 51
Botrytis_cinerea_B05.10_ 55 45
Sclerotinia_sclerotiorum_ 69 56
Blumeria_graminis_22 47 36
Didymella_exigua_CBS_183.55_v1.0 72 61
Leptosphaeria_maculans_22 58 49
Setosphaeria_turcica_v1.0 74 59
Cochliobolus_miyabeanus_ATCC_44560_v1.0 77 63
Cochliobolus_victoriae_FI3_v1.0 80 64
Cochliobolus_carbonum_26-R-13_v1.0 79 64
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   63 51
Alternaria_brassicicola_ 52 45
Cochliobolus_lunatus_m118_v2.0 71 57
Pyrenophora_teres_f._teres_22 67 55
Pyrenophora_tritici-repentis_ 74 56
Stagonospora_nodorum_ 72 62
Mycosphaerella_graminicola_IPO323_ 60 50
Zasmidium_cellare_ATCC_36951_v1.0 93 80
Dothistroma_septosporum 80 70
Septoria_musiva_v1.0 68 55
Mycosphaerella_fijiensis_CIRAD86_ 67 56
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 73 62
Paracoccidioides_brasiliensis_Pb18_ 52 41
Coccidioides_posadasii_RMSCC_3488_ 62 47
Coccidioides_immitis_RS_ 73 57
Ajellomyces_dermatitidis_SLH14081_ 60 48
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 55 43
Microsporum_canis_CBS_113480_ 53 39
Trichophyton_equinum_CBS_127.97_ 63 47
Trichophyton_verrucosum_HKI_0517_ 46 37
Arthroderma_benhamiae_CBS_112371_ 45 36
Trichophyton_tonsurans_CBS_112818_ 63 47
Trichophyton_rubrum_CBS_118892_ 62 48
Uncinocarpus_reesii_1704_ 50 46
Aspergillus_zonatus_v1.0 75 60
Penicillium_chrysogenum_Wisconsin_54-1255_ 105 88
Penicillium_chrysogenum_v1.0 89 74
Aspergillus_acidus_v1.0 94 78
Aspergillus_fumigatus_Af293 70 54
Aspergillus_brasiliensis_v1.0 97 82
Aspergillus_nidulans_FGSC_A4_ 75 60
Aspergillus_sydowii_v1.0 116 97
Aspergillus_versicolor_v1.0 121 102
Aspergillus_glaucus 82 69
Aspergillus_carbonarius_ITEM_5010_ 74 60
Neosartorya_fischeri_NRRL_181_ 76 62
Aspergillus_terreus_NIH2624_ 68 57
Aspergillus_tubingensis_v1.0 81 68
Aspergillus_wentii_v1.0 88 74
Aspergillus_oryzae_RIB40_ 46 38
Aspergillus_niger_22 80 66
Aspergillus_niger_ATCC_1015_ 53 42
Aspergillus_flavus_NRRL3357_ 60 51
Aspergillus_clavatus_NRRL_1_ 69 56
Penicillium_marneffei_ATCC_18224_ 83 63
Tuber_melanosporum_Mel28_22 61 48
Tuber_melanosporum_Vittad_   (Perigord truffle)   64 51
Hansenula_polymorpha_v2.0 51 40
Dekkera_bruxellensis_CBS_2499_v2.0 47 37
Pichia_membranifaciensv1.0 52 42
Candida_tanzawaensis_NRRL_Y-17324__v1.0 49 40
Candida_dubliniensis_CD36_ 51 40
Candida_tropicalis_MYA-3404_ 51 38
Candida_parapsilosis_ 50 39
Candida_albicans_SC5314 51 40
Lodderomyces_elongisporus_NRRL_YB-4239_ 49 38
Babjeviella_inositovora_NRRL_Y-12698_v1.0 55 44
Pichia_stipitis_CBS_6054_ 51 41
Candida_guilliermondii_ATCC_6260_ 49 40
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 45 38
Debaromyces_hansenii 50 42
Wickerhamomyces_anomalus 59 45
Pichia_pastoris_GS115_ 47 36
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 36 32
Yarrowia_lipolytica_CLIB122 50 40
Candida_lusitaniae_ATCC_42720_ 43 35
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 55 40
Vanderwaltozyma_polyspora_DSM_70294_ 55 46
Candida_glabrata_CBS138 62 50
Kluyveromyces_thermotolerans_CBS_6340 44 35
Lachancea_kluyveri_ 58 43
Kluyveromyces_waltii 48 37
Ashbya_gossypii_ATCC_10895_ 48 40
Zygosaccharomyces_rouxii_ 39 29
Saccharomyces_mikatae_MIT 53 43
Saccharomyces_paradoxus_MIT 54 44
Saccharomyces_cerevisiae_76   (Baker's yeast)   55 44
Saccharomyces_bayanus_MIT 47 42
Kluyveromyces_lactis 45 35
Schizosaccharomyces_cryophilus_OY26_22 32 24
Schizosaccharomyces_octosporus_yFS286_ 31 23
Schizosaccharomyces_japonicus_yFS275_ 33 24
Schizosaccharomyces_pombe   (Fission yeast)   34 27
Catenaria_anguillulae_PL171_v1.0 59 43
Allomyces_macrogynus_ATCC_38327_ 132 85
Spizellomyces_punctatus_DAOM_BR117_ 100 69
Dictyostelium_discoideum 26 20
Dictyostelium_purpureum_ 22 17
Entamoeba_dispar_1.2 21 13
Entamoeba_invadens_1.2 18 13
Entamoeba_histolytica_1 28 17
Selaginella_moellendorffii_ 110 82
Pinus_taeda   (Loblolly pine)   84 59
Picea_abies   (Norway spruce)   81 63
Eucalyptus_grandis_v201   (Rose gum)   179 138
Theobroma_cacao_B97-61/B2_v1   (Cacao)   184 157
Gossypium_raimondii_v221 401 308
Citrus_clementina_v165 221 150
Citrus_sinensis_v154   (Sweet orange)   197 153
Thellungiella_halophila_v173 153 121
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   236 197
Capsella_rubella_v183 166 135
Arabidopsis_lyrata_   (Lyrate rockcress)   163 133
Arabidopsis_thaliana_10   (Thale cress)   178 136
Carica_papaya_   (Papaya)   113 90
Medicago_truncatula_   (Barrel medic)   167 129
Phaseolus_vulgaris_v186   (French bean)   220 180
Glycine_max_v109   (Soybean)   327 277
Cucumis_sativus_v122   (Cucumber)   152 129
Fragaria_vesca_   (Wild strawberry)   172 136
Malus_domestica_v196   (Apple)   265 209
Prunus_persica_v139   (Peach)   181 142
Linum_usitatissimum_v200   (Flax)   216 167
Manihot_esculenta_v147   (Cassava)   220 167
Populus_trichocarpa_v156   (Black cottonwood)   268 203
Vitis_vinifera_   (Wine grape)   117 84
Mimulus_guttatus_v140   (Spotted monkey flower)   152 118
Solanum_lycopersicum_v.2.3   (Tomato)   169 135
Solanum_tuberosum_   (Potato)   258 207
Actinidia_chinensis_Hongyang_ 228 194
Aquilegia_coerulea_v195 213 153
Triticum_urartu_22 145 108
Triticum_aestivum_22   (Bread wheat)   318 258
Aegilops_tauschii_22 168 121
Brachypodium_distachyon_   (Stiff brome)   175 139
Oryza_barthii_22   (African wild rice)   194 138
Oryza_meridionalis_22 191 145
Oryza_glumaepatula_22 205 156
Oryza_glaberrima   (African rice)   155 124
Oryza_punctata_22 202 148
Oryza_nivara_22 231 165
Oryza_brachyantha_22   (Malo sina)   150 116
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   322 273
Oryza_sativa_v193   (Rice)   319 270
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   186 131
Panicum_virgatum_v202   (Switchgrass)   411 311
Setaria_italica_v164   (Foxtail millet)   195 153
Zea_mays_subsp._mays_   (Maize)   293 223
Zea_mays_v181   (Maize)   311 239
Sorghum_bicolor_   (Sorghum)   214 163
Musa_balbisiana   (Balbis banana)   261 223
Musa_acuminata_22   (Wild Malaysian banana)   243 204
Amborella_trichopoda_22 113 90
Physcomitrella_patens 85 63
Coccomyxa_subellipsoidea_sp._C-169_v2 19 11
Asterochloris_sp._Cgr/DA1pho_v1.0 19 10
Chlorella_variabilis_sp._NC64A_ 14 9
Chlorella_vulgaris_ 19 11
Volvox_carteri_f._nagariensis_ 13 11
Volvox_carteri_v199 13 11
Chlamydomonas_reinhardtii_4.0 15 13
Ostreococcus_sp._RCC809_ 14 10
Ostreococcus_lucimarinus_CCE9901_ 14 10
Ostreococcus_tauri_ 10 8
Bathycoccus_prasinos_ 151 58
Micromonas_sp._RCC299_ 24 16
Micromonas_pusilla_CCMP1545_v3.0 22 13
Cyanidioschyzon_merolae_strain_10D_22 18 12
Cyanidioschyzon_merolae 18 12
Porphyridium_purpureum_02_2012 98 66
Thecamonas_trahens_ATCC_50062_ 21 14
Bigelowiella_natans_CCMP2755_22 192 112
Giardia_lamblia_2.3 10 10
Cyanophora_paradoxa_ 25 19
Leishmania_mexicana_2.4 13 12
Leishmania_major_strain_Friedlin_ 12 11
Leishmania_infantum_JPCM5_2.4 12 11
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 14 11
Trypanosoma_vivax_ 49 41
Trypanosoma_cruzi_strain_CL_Brener 11 9
Trypanosoma_congolense_2.4 55 47
Trypanosoma_brucei_gambiense_v4.1 15 14
Trypanosoma_brucei_TREU927_v4.1 13 12
Ectocarpus_siliculosus 24 18
Aureococcus_anophagefferens_ 7 6
Albugo_laibachii_22 41 33
Pythium_iwayamai_DAOM_BR242034_22 63 42
Pythium_arrhenomanes_ATCC_12531_22 40 27
Pythium_ultimum_v1.7-2 82 49
Pythium_aphanidermatum_DAOM_BR444_22 46 30
Pythium_irregulare_DAOM_BR486_22 69 43
Pythium_vexans_DAOM_BR484_22 55 36
Phytophthora_ramorum_1.1   (Sudden oak death agent)   70 44
Phytophthora_sojae_1.1 66 41
Phytophthora_infestans_T30-4_ 78 49
Phytophthora_capsici_ 70 42
Hyaloperonospora_arabidopsidis_22 43 27
Phaeodactylum_tricornutumCCAP_1055/1 8 8
Fragilariopsis_cylindrus 26 24
Thalassiosira_pseudonana_CCMP1335 14 13
Perkinsus_marinus_ATCC_50983_ 51 41
Paramecium_tetraurelia_ 59 45
Tetrahymena_thermophila_SB210_1_ 36 23
Ichthyophthirius_multifiliis_strain_G5_ 7 6
Cryptosporidium_hominis 10 7
Cryptosporidium_muris 14 11
Cryptosporidium_parvum_Iowa_II 13 10
Neospora_caninum 14 11
Toxoplasma_gondii_VEG 13 12
Toxoplasma_gondii_ME49 18 13
Toxoplasma_gondii_GT1 13 12
Babesia_bovis_T2Bo_ 22 18
Theileria_parva__ 10 10
Theileria_annulata 12 10
Plasmodium_falciparum_3D7_ 10 8
Plasmodium_vivax_SaI-1_7.0 11 9
Plasmodium_knowlesi_strain_H_ 10 9
Plasmodium_yoelii_ssp._yoelii_1_ 12 9
Plasmodium_chabaudi_ 12 9
Plasmodium_berghei_ANKA_ 11 9
Symbiodinium_minutum_clade_B1_v1.2 28 25
Naegleria_gruberi_ 15 10
Trichomonas_vaginalis_ 17 11
Guillardia_theta_CCMP2712_v1.0_ 28 22
Emiliania_huxleyi_CCMP1516_ 56 44
Thermobaculum_terrenum_ATCC_BAA-798 1 1
Oscillibacter_valericigenes_Sjm18-20 1 1
Babela_massiliensis 1 1
Xenorhabdus_bovienii_SS-2004 1 1
Pantoea_sp._At-9b 6 2
Pseudomonas_sp._UW4 4 1
Candidatus_Caldiarchaeum_subterraneum 1 1
Cenarchaeum_symbiosum_A 1 1
Candidatus_Nitrosopumilus_sp._AR2 3 3
Pyrolobus_fumarii_1A 1 1
Ignisphaera_aggregans_DSM_17230 2 2
Acidianus_hospitalis_W1 2 2
Sulfolobus_tokodaii_str._7 1 1
Sulfolobus_islandicus_Y.N.15.51 2 2
Sulfolobus_solfataricus_P2 2 2
Vulcanisaeta_moutnovskia_768-28 1 1
Vulcanisaeta_distributa_DSM_14429 1 1
Pyrobaculum_sp._1860 1 1
Pyrobaculum_calidifontis_JCM_11548 1 1
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Pyrobaculum_aerophilum_str._IM2 1 1
Pyrobaculum_islandicum_DSM_4184 1 1
Methanohalobium_evestigatum_Z-7303 1 1
Archaeoglobus_veneficus_SNP6 1 1
Archaeoglobus_fulgidus_DSM_4304 1 1
Thermococcus_sp._4557 1 1
Thermococcus_onnurineus_NA1 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Thermococcus_sibiricus_MM_739 1 1
Thermococcus_barophilus_MP 1 1
Pyrococcus_yayanosii_CH1 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halopiger_xanaduensis_SH-6 1 1
Haloferax_mediterranei_ATCC_33500 1 1
Natronomonas_pharaonis_DSM_2160 1 1
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 1 1
Halalkalicoccus_jeotgali_B3 2 2
Methanotorris_igneus_Kol_5 1 1
Methanocaldococcus_sp._FS406-22 1 1
Methanocaldococcus_fervens_AG86 1 1
Methanocaldococcus_vulcanius_M7 1 1
methanocaldococcus_infernus_ME 1 1
Aciduliprofundum_boonei_T469 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   3492 796
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1223 428
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   995 341
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   186 101
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   316 164
Cryptococcus_neoformans_var._grubii_H99_ 37 26
Cryptococcus_neoformans_B-3501A_ 41 31
Cryptococcus_neoformans_JEC21_ 29 22
Paracoccidioides_brasiliensis_Pb01_ 51 41
Paracoccidioides_brasiliensis_Pb03_ 48 38
Coccidioides_posadasii_str._Silveira_ 61 46
Coccidioides_immitis_RMSCC_3703_ 53 42
Coccidioides_immitis_RMSCC_2394_ 60 46
Coccidioides_immitis_H538.4_ 46 35
Ajellomyces_dermatitidis_ER-3_ 60 49
Histoplasma_capsulatum_H143 53 40
Histoplasma_capsulatum_H88 62 47
Histoplasma_capsulatum_G186AR 57 42
Aspergillus_fumigatus_A1163_ 72 56
Candida_albicans_WO-1_ 48 37
Saccharomyces_cerevisiae_UC5 48 39
Saccharomyces_cerevisiae_PW5 44 36
Saccharomyces_cerevisiae_FL100 40 31
Saccharomyces_cerevisiae_CLIB382 3 3
Saccharomyces_cerevisiae_CLIB324 32 26
Saccharomyces_cerevisiae_CBS7960 39 30
Saccharomyces_cerevisiae_YJM269 41 35
Saccharomyces_cerevisiae_T7 56 44
Saccharomyces_cerevisiae_FostersB 42 34
Saccharomyces_cerevisiae_FostersO 38 31
Saccharomyces_cerevisiae_VL3 48 36
Saccharomyces_cerevisiae_Vin13 41 35
Saccharomyces_cerevisiae_LalvinQA23 36 32
Saccharomyces_cerevisiae_AWRI796 48 38
Saccharomyces_cerevisiae_Sigma1278b 56 44
Saccharomyces_cerevisiae_W303 54 43
Saccharomyces_cerevisiae_JAY291 54 43
Saccharomyces_cerevisiae_AWRI1631 40 32
Saccharomyces_cerevisiae_YPS163 24 19
Saccharomyces_cerevisiae_M22 23 19
Saccharomyces_cerevisiae_T73 29 25
Saccharomyces_cerevisiae_CLIB215 31 29
Saccharomyces_cerevisiae_Y10 12 12
Saccharomyces_cerevisiae_YJM789_ 56 44
Saccharomyces_cerevisiae_YJM789 52 43
Saccharomyces_cerevisiae_RM11-1a 55 43
Saccharomyces_cerevisiae_RM11-1a_ 55 43
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   55 44
Schizosaccharomyces_pombe_972h-_ 33 26
Batrachochytrium_dendrobatidis_JEL423_ 73 49
Batrachochytrium_dendrobatidis_JAM81_ 69 47
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   161 132
Hordeum_vulgare_22   (Domesticated barley)   316 206
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   236 190
Trypanosoma_brucei_Lister_427_v4.1 17 16
Neospora_caninum_Nc-Liverpool_6.2 14 11
Plasmodium_falciparum_HB3_ 10 8
Plasmodium_falciparum_Dd2_ 7 5
Dehalococcoides_sp._CBDB1 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 13 13
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 3 3
Sulfolobus_islandicus_LAL14/1 1 1
Sulfolobus_islandicus_REY15A 1 1
Sulfolobus_islandicus_HVE10/4 1 1
Sulfolobus_islandicus_Y.G.57.14 3 3
Sulfolobus_islandicus_L.S.2.15 1 1
Sulfolobus_islandicus_M.16.27 1 1
Sulfolobus_islandicus_M.14.25 2 2
Sulfolobus_islandicus_M.16.4 2 2
Thermococcus_sp._AM4 1 1
Thermococcus_litoralis_DSM_5473 1 1
Natronococcus_occultus_SP4 2 2
Natronobacterium_gregoryi_SP2 1 1
Haloquadratum_walsbyi_C23 1 1
Natronomonas_moolapensis_8.8.11 1 1
Haloarcula_hispanica_N601 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   4393 801
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3707 696
Gorilla_gorilla_69_3.1   (Western gorilla)   3478 682
Pongo_abelii_69_2   (Sumatran orangutan)   3417 673
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3499 657
Macaca_mulatta_69_1   (Rhesus monkey)   3738 723
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3611 657
Otolemur_garnettii_69_3   (Small-eared galago)   3496 629
Microcebus_murinus_69_1   (Gray mouse lemur)   2020 471
Rattus_norvegicus_69_3.4   (Norway rat)   2465 564
Mus_musculus_69_38   (House mouse)   3610 702
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1407 356
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1708 423
Cavia_porcellus_69_3   (Domestic guinea pig)   1359 367
Oryctolagus_cuniculus_69_2   (Rabbit)   1442 368
Ochotona_princeps_69   (American pika)   1450 368
Tupaia_belangeri_69   (Northern tree shrew)   1530 376
Sus_scrofa_69_10.2   (Pig)   2491 519
Bos_taurus_69_3.1   (Cattle)   2866 565
Vicugna_pacos_69_1   (Alpaca)   1376 329
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2468 537
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2538 536
Ailuropoda_melanoleuca_69_1   (Giant panda)   2090 480
Canis_familiaris_69_3.1   (Dog)   2741 571
Felis_catus_69   (Domestic cat)   1827 424
Equus_caballus_69_2   (Horse)   3057 582
Myotis_lucifugus_69_2.0   (Little brown bat)   1572 405
Pteropus_vampyrus_69_1   (Large flying fox)   2121 484
Sorex_araneus_69_1   (European shrew)   1119 297
Erinaceus_europaeus_69   (Western European hedgehog)   1184 323
Procavia_capensis_69_1   (Cape rock hyrax)   1897 452
Loxodonta_africana_69_3   (African savanna elephant)   1436 383
Echinops_telfairi_69   (Small Madagascar hedgehog)   1956 469
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1797 449
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1666 390
Macropus_eugenii_69_1.0   (Tammar wallaby)   1221 322
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3317 572
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5882 829
Ornithorhynchus_anatinus_69_5   (Platypus)   1002 297
Petromyzon_marinus_69_7.0   (Sea lamprey)   548 174
Meleagris_gallopavo_69_2   (Turkey)   759 235
Gallus_gallus_69_2   (Chicken)   991 261
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2414 590
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2371 483
Anolis_carolinensis_69_2.0   (Green anole)   5846 744
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2325 443
Latimeria_chalumnae_69_1   (Coelacanth)   1071 313
Gadus_morhua_69_1   (Atlantic cod)   1011 334
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1165 366
Takifugu_rubripes_69_4   (Torafugu)   1284 361
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1341 364
Oryzias_latipes_69_1   (Japanese medaka)   1463 383
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1688 454
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2520 511
Danio_rerio_69_9   (Zebrafish)   7070 1273
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   547 116
Ciona_intestinalis_69   (Vase tunicate)   375 140
Drosophila_melanogaster_69_5   (Fruit fly)   820 267
Caenorhabditis_elegans_69_215   (Roundworm)   220 118
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   55 44
Arabidopsis_thaliana_10   (Thale cress)   147 115

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   11212 2302
Homo_sapiens__(NCBI_version)   (Human)   6518 1203
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3574 698
Heliconius_numata__(Incomplete) 146 95
Loa_loa_v3.3_(Request)   (Eye worm)   468 274
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   193 115
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   435 175
Moniliophthora_perniciosa_FA553__(Genome_survey) 19 18
Encephalitozoon_intestinalis__(endoparasite) 15 11
Encephalitozoon_cuniculi_(endoparasite) 14 11
Picea_sitchensis__(Incomplete)   (Sitka spruce)   9 8
Lotus_japonicus__(Early_assembly) 147 124
Malus_x_domestica_(Duplicate)   (Apple)   265 209
Ricinus_communis__(Early_assembly)   (Castor bean)   137 101
Nicotiana_benthamiana_0.4.4_(Early_draft) 287 236
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   168 134
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   169 135
Phoenix_dactylifera__(Early_draft)   (Date palm)   52 41
NCBI_plasmid_sequences_(Plasmids) 11 9
STRING_v9.0.5_(STRING) 92266 23815
PDB_chains_(SCOP_1.75)_(PDB) 212 173
Uniprot_2018_03_genome 732602 249271
TargetDB__(Targets) 948 499
NCBI_2017_08_genome 1502267 352898
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1126 1112
Protozoadb_2010_08_(Protozoadb) 462 356
Core_Eukaryotic_Genes_458_(CEGMA) 13 8
UniProt__viral_sequences_(Viral) 30 25
NCBI_viral_sequences_(Viral) 45 41
Protein_Data_Bank_(all_PDB_sequenc) 558 421

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