SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Zn2/Cys6 DNA-binding domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Zn2/Cys6 DNA-binding domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Sphaeroforma_arctica_JP610_ 2 2
Capsaspora_owczarzaki_ATCC_30864_ 9 9
Conidiobolus_coronatus_NRRL28638_v1.0 122 120
Mortierella_verticillata_NRRL_6337_ 42 42
Phycomyces_blakesleeanus_ 53 50
Rhizopus_oryzae_RA_99-880_ 32 30
Mucor_circinelloides_ 32 30
Rhizomucor_miehei_CAU432_ 50 48
Malassezia_globosa_CBS_7966_ 10 10
Sporisorium_reilianum_22 91 91
Ustilago_maydis_ 89 89
Mixia_osmundae_IAM_14324_v1.0 30 30
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 32 32
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 26 25
Melampsora_laricis-populina_ 35 35
Rhodotorula_graminis_WP1_v1.0 66 65
Sporobolomyces_roseus_IAM_13481_ 23 22
Microbotryum_violaceum_22 64 64
Wallemia_sebi_v1.0 35 35
Sphaerobolus_stellatus_v1.0 138 136
Piloderma_croceum_F_1598_v1.0 82 78
Serpula_lacrymans_var._lacrymans_S7.9_ 30 30
Coniophora_puteana 65 64
Hydnomerulius_pinastri_v2.0 53 50
Paxillus_rubicundulus_Ve08.2h10_v1.0 57 54
Pisolithus_microcarpus_441_v1.0 62 56
Pisolithus_tinctorius_Marx_270_v1.0 61 55
Scleroderma_citrinum_Foug_A_v1.0 56 51
Coprinopsis_cinerea_okayama7_130_v3 42 41
Pleurotus_ostreatus_   (Oyster mushroom)   51 50
Amanita_thiersii_Skay4041_v1.0 48 46
Amanita_muscaria_Koide_v1.0   (Fly agaric)   64 58
Galerina_marginata_v1.0 70 65
Hebeloma_cylindrosporum_h7_v2.0 68 66
Laccaria_bicolor_S238N-H82_ 69 68
Agaricus_bisporus_var._bisporus_ 53 52
Schizophyllum_commune_ 84 81
Stereum_hirsutum_FP-91666_SS1__v1.0 94 87
Heterobasidion_annosum_ 54 53
Gloeophyllum_trabeumv1.0 57 56
Punctularia_strigosozonata_v1.0 59 58
Sebacina_vermifera_MAFF_305830_v1.0 58 57
Fomitiporia_mediterranea_v1.0 84 83
Tulasnella_calospora_AL13/4D_v1.0 45 45
Postia_placenta_ 55 53
Wolfiporia_cocos_MD-104_SS10__v1.0 67 64
Fomitopsis_pinicolav1.0 60 57
Fomitopsis_pinicola_FP-58527_SS1_v3.0 65 62
Phanerochaete_chrysosporium_RP-78_2.1 36 35
Dichomitus_squalens 81 76
Trametes_versicolor_v1.0 89 85
Tremella_mesenterica_   (Witches' butter)   56 55
Daldinia_eschscholzii_EC12_v1.0 179 177
Apiospora_montagnei_NRRL_25634_v1.0 249 247
Magnaporthe_poae_ATCC_64411_22 124 122
Magnaporthe_grisea_70-15_ 113 112
Podospora_anserina_ 129 127
Sporotrichum_thermophile_ATCC_42464_ 117 115
Thielavia_terrestris_NRRL_8126_ 135 133
Chaetomium_globosum_CBS_148.51_ 110 109
Neurospora_tetrasperma_ 99 97
Neurospora_discreta_FGSC_8579_ 100 97
Neurospora_crassa_OR74A_ 100 98
Cryphonectria_parasitica_   (Chestnut blight fungus)   155 152
Verticillium_albo-atrum_VaMs.102_ 154 154
Verticillium_dahliae_VdLs.17_ 168 168
Acremonium_alcalophilumv_1.0 81 81
Glomerella_graminicola_22 202 201
Fusarium_graminearum_ 252 248
Nectria_haematococca_mpVI_ 496 491
Fusarium_oxysporum_f._sp._lycopersici_4286_ 289 287
Fusarium_verticillioides_7600_ 231 228
Trichoderma_asperellum_CBS_433.97_v1.0 345 338
Trichoderma_atroviride_ 289 282
Trichoderma_citrinoviride_v1.0 203 201
Trichoderma_reesei_1.2 201 197
Trichoderma_virens_Gv29-8_ 291 286
Trichoderma_longibrachiatum_ATCC_18648_v1.0 216 211
Trichoderma_harzianum_CBS_226.95_v1.0 425 418
Amorphotheca_resinae_v1.0   (Creosote fungus)   151 151
Botrytis_cinerea_B05.10_ 117 117
Sclerotinia_sclerotiorum_ 88 88
Blumeria_graminis_22 25 25
Didymella_exigua_CBS_183.55_v1.0 167 166
Leptosphaeria_maculans_22 117 116
Setosphaeria_turcica_v1.0 167 165
Cochliobolus_miyabeanus_ATCC_44560_v1.0 187 185
Cochliobolus_victoriae_FI3_v1.0 194 192
Cochliobolus_carbonum_26-R-13_v1.0 186 184
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   119 117
Alternaria_brassicicola_ 80 80
Cochliobolus_lunatus_m118_v2.0 194 192
Pyrenophora_teres_f._teres_22 113 111
Pyrenophora_tritici-repentis_ 98 98
Stagonospora_nodorum_ 135 132
Mycosphaerella_graminicola_IPO323_ 95 94
Zasmidium_cellare_ATCC_36951_v1.0 329 328
Dothistroma_septosporum 162 161
Septoria_musiva_v1.0 128 128
Mycosphaerella_fijiensis_CIRAD86_ 104 103
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 206 206
Paracoccidioides_brasiliensis_Pb18_ 55 54
Coccidioides_posadasii_RMSCC_3488_ 89 88
Coccidioides_immitis_RS_ 105 104
Ajellomyces_dermatitidis_SLH14081_ 85 85
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 62 62
Microsporum_canis_CBS_113480_ 92 91
Trichophyton_equinum_CBS_127.97_ 81 81
Trichophyton_verrucosum_HKI_0517_ 35 35
Arthroderma_benhamiae_CBS_112371_ 44 44
Trichophyton_tonsurans_CBS_112818_ 92 91
Trichophyton_rubrum_CBS_118892_ 98 97
Uncinocarpus_reesii_1704_ 62 62
Aspergillus_zonatus_v1.0 285 281
Penicillium_chrysogenum_Wisconsin_54-1255_ 334 329
Penicillium_chrysogenum_v1.0 320 318
Aspergillus_acidus_v1.0 349 347
Aspergillus_fumigatus_Af293 193 192
Aspergillus_brasiliensis_v1.0 420 419
Aspergillus_nidulans_FGSC_A4_ 247 246
Aspergillus_sydowii_v1.0 538 532
Aspergillus_versicolor_v1.0 586 580
Aspergillus_glaucus 271 270
Aspergillus_carbonarius_ITEM_5010_ 266 265
Neosartorya_fischeri_NRRL_181_ 197 197
Aspergillus_terreus_NIH2624_ 186 185
Aspergillus_tubingensis_v1.0 342 339
Aspergillus_wentii_v1.0 361 357
Aspergillus_oryzae_RIB40_ 180 179
Aspergillus_niger_22 306 304
Aspergillus_niger_ATCC_1015_ 213 213
Aspergillus_flavus_NRRL3357_ 200 199
Aspergillus_clavatus_NRRL_1_ 183 182
Penicillium_marneffei_ATCC_18224_ 274 273
Tuber_melanosporum_Mel28_22 56 56
Tuber_melanosporum_Vittad_   (Perigord truffle)   58 58
Hansenula_polymorpha_v2.0 74 74
Dekkera_bruxellensis_CBS_2499_v2.0 66 65
Pichia_membranifaciensv1.0 85 84
Candida_tanzawaensis_NRRL_Y-17324__v1.0 67 66
Candida_dubliniensis_CD36_ 80 80
Candida_tropicalis_MYA-3404_ 82 82
Candida_parapsilosis_ 66 66
Candida_albicans_SC5314 73 73
Lodderomyces_elongisporus_NRRL_YB-4239_ 60 59
Babjeviella_inositovora_NRRL_Y-12698_v1.0 58 57
Pichia_stipitis_CBS_6054_ 90 88
Candida_guilliermondii_ATCC_6260_ 96 96
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 83 81
Debaromyces_hansenii 90 89
Wickerhamomyces_anomalus 98 98
Pichia_pastoris_GS115_ 56 55
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 36 36
Yarrowia_lipolytica_CLIB122 51 51
Candida_lusitaniae_ATCC_42720_ 67 65
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 57 55
Vanderwaltozyma_polyspora_DSM_70294_ 38 38
Candida_glabrata_CBS138 41 41
Kluyveromyces_thermotolerans_CBS_6340 62 62
Lachancea_kluyveri_ 66 66
Kluyveromyces_waltii 47 47
Ashbya_gossypii_ATCC_10895_ 41 41
Zygosaccharomyces_rouxii_ 49 49
Saccharomyces_mikatae_MIT 62 62
Saccharomyces_paradoxus_MIT 59 59
Saccharomyces_cerevisiae_76   (Baker's yeast)   55 55
Saccharomyces_bayanus_MIT 54 54
Kluyveromyces_lactis 57 57
Schizosaccharomyces_cryophilus_OY26_22 26 26
Schizosaccharomyces_octosporus_yFS286_ 23 23
Schizosaccharomyces_japonicus_yFS275_ 20 20
Schizosaccharomyces_pombe   (Fission yeast)   30 30
Catenaria_anguillulae_PL171_v1.0 7 7
Allomyces_macrogynus_ATCC_38327_ 23 23
Spizellomyces_punctatus_DAOM_BR117_ 19 19
Dictyostelium_discoideum 3 3
Dictyostelium_purpureum_ 2 2
Citrus_clementina_v165 1 1
Thecamonas_trahens_ATCC_50062_ 5 5
Bigelowiella_natans_CCMP2755_22 26 26
Ectocarpus_siliculosus 30 29
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 4 4
Thalassiosira_pseudonana_CCMP1335 4 4
Naegleria_gruberi_ 73 73
Guillardia_theta_CCMP2712_v1.0_ 144 94
Emiliania_huxleyi_CCMP1516_ 30 26
Eubacterium_rectale_M104/1 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Cryptococcus_neoformans_var._grubii_H99_ 80 80
Cryptococcus_neoformans_B-3501A_ 95 95
Cryptococcus_neoformans_JEC21_ 70 70
Paracoccidioides_brasiliensis_Pb01_ 56 55
Paracoccidioides_brasiliensis_Pb03_ 60 60
Coccidioides_posadasii_str._Silveira_ 92 91
Coccidioides_immitis_RMSCC_3703_ 64 64
Coccidioides_immitis_RMSCC_2394_ 87 86
Coccidioides_immitis_H538.4_ 67 67
Ajellomyces_dermatitidis_ER-3_ 84 84
Histoplasma_capsulatum_H143 61 61
Histoplasma_capsulatum_H88 75 75
Histoplasma_capsulatum_G186AR 75 75
Aspergillus_fumigatus_A1163_ 212 211
Candida_albicans_WO-1_ 65 65
Saccharomyces_cerevisiae_UC5 40 40
Saccharomyces_cerevisiae_PW5 43 43
Saccharomyces_cerevisiae_FL100 20 20
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CLIB324 16 16
Saccharomyces_cerevisiae_CBS7960 37 37
Saccharomyces_cerevisiae_YJM269 35 35
Saccharomyces_cerevisiae_T7 55 55
Saccharomyces_cerevisiae_FostersB 22 22
Saccharomyces_cerevisiae_FostersO 20 20
Saccharomyces_cerevisiae_VL3 28 28
Saccharomyces_cerevisiae_Vin13 28 28
Saccharomyces_cerevisiae_LalvinQA23 31 31
Saccharomyces_cerevisiae_AWRI796 27 27
Saccharomyces_cerevisiae_Sigma1278b 52 52
Saccharomyces_cerevisiae_W303 52 52
Saccharomyces_cerevisiae_JAY291 46 46
Saccharomyces_cerevisiae_AWRI1631 27 27
Saccharomyces_cerevisiae_YPS163 10 10
Saccharomyces_cerevisiae_M22 5 5
Saccharomyces_cerevisiae_T73 14 14
Saccharomyces_cerevisiae_CLIB215 34 34
Saccharomyces_cerevisiae_Y10 4 4
Saccharomyces_cerevisiae_YJM789_ 55 55
Saccharomyces_cerevisiae_YJM789 53 53
Saccharomyces_cerevisiae_RM11-1a 53 53
Saccharomyces_cerevisiae_RM11-1a_ 52 52
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   55 55
Schizosaccharomyces_pombe_972h-_ 29 29
Batrachochytrium_dendrobatidis_JEL423_ 10 10
Batrachochytrium_dendrobatidis_JAM81_ 14 14

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   55 55

Others
Genome     Number   Proteins
Moniliophthora_perniciosa_FA553__(Genome_survey) 9 9
PDB_chains_(SCOP_1.75)_(PDB) 12 12
STRING_v9.0.5_(STRING) 4388 4354
NCBI_2017_08_genome 30675 30317
Uniprot_2018_03_genome 104825 103588
Protein_Data_Bank_(all_PDB_sequenc) 37 37
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 89 89
TargetDB__(Targets) 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]