SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Retrovirus zinc finger-like domains superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Retrovirus zinc finger-like domains domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   114 77
Pan_troglodytes_76_2.1.4   (Chimpanzee)   28 20
Gorilla_gorilla_76_3.1   (Western gorilla)   34 24
Pongo_abelii_76_2   (Sumatran orangutan)   28 19
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   27 19
Papio_anubis_76   (Olive baboon)   30 21
Macaca_mulatta_76_1   (Rhesus monkey)   41 30
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   43 34
Otolemur_garnettii_76_3   (Small-eared galago)   39 26
Microcebus_murinus_76_1   (Gray mouse lemur)   19 15
Rattus_norvegicus_76_5.0   (Norway rat)   37 27
Mus_musculus_76_38   (House mouse)   57 41
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   31 17
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   28 18
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   28 21
Cavia_porcellus_76_3   (Domestic guinea pig)   32 22
Oryctolagus_cuniculus_76_2   (Rabbit)   37 26
Ochotona_princeps_76   (American pika)   20 15
Tupaia_belangeri_76   (Northern tree shrew)   15 10
Sus_scrofa_76_10.2   (Pig)   44 36
Bos_taurus_76_3.1   (Cattle)   33 22
Ovis_aries_76_3.1   (Sheep)   57 44
Vicugna_pacos_76_1   (Alpaca)   21 15
Tursiops_truncatus_76_1   (Bottlenose dolphin)   26 18
Mustela_putorius_furo_76_1.0   (Domestic ferret)   25 18
Ailuropoda_melanoleuca_76_1   (Giant panda)   29 22
Canis_familiaris_76_3.1   (Dog)   40 26
Felis_catus_76_6.2   (Domestic cat)   73 63
Equus_caballus_76_2   (Horse)   30 22
Myotis_lucifugus_76_2.0   (Little brown bat)   38 27
Pteropus_vampyrus_76_1   (Large flying fox)   21 15
Sorex_araneus_76_1   (European shrew)   20 13
Erinaceus_europaeus_76   (Western European hedgehog)   17 13
Procavia_capensis_76_1   (Cape rock hyrax)   17 13
Loxodonta_africana_76_3   (African savanna elephant)   35 26
Echinops_telfairi_76   (Small Madagascar hedgehog)   21 12
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   65 45
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   24 15
Macropus_eugenii_76_1.0   (Tammar wallaby)   22 15
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   52 43
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   62 50
Ornithorhynchus_anatinus_76_5   (Platypus)   19 15
Saccoglossus_kowalevskii_v3.0 143 118
Petromyzon_marinus_76_7.0   (Sea lamprey)   11 8
Meleagris_gallopavo_76_2   (Turkey)   22 16
Gallus_gallus_76_4   (Chicken)   26 20
Anas_platyrhynchos_76_1.0   (Mallard)   23 17
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   23 16
Ficedula_albicollis_76_1.0   (Collared flycatcher)   27 19
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   37 30
Anolis_carolinensis_76_2.0   (Green anole)   129 127
Xenopus_laevis_   (African clawed frog)   76 56
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   143 127
Latimeria_chalumnae_76_1   (Coelacanth)   66 59
Lepisosteus_oculatus_76   (Spotted gar)   89 68
Gadus_morhua_76_1   (Atlantic cod)   36 27
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   27 22
Takifugu_rubripes_76_4   (Torafugu)   45 38
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   44 36
Oryzias_latipes_76_1   (Japanese medaka)   45 36
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   30 24
Poecilia_formosa_76   (Amazon molly)   24 18
Oreochromis_niloticus_76_1.0   (Nile tilapia)   37 29
Astyanax_mexicanus_76   (Mexican tetra)   39 31
Danio_rerio_76_9   (Zebrafish)   101 79
Oikopleura_dioica 14 12
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   33 21
Ciona_intestinalis_76   (Vase tunicate)   25 19
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   113 104
Adineta_vaga 59 44
Octopus_bimaculoides_280 69 58
Crassostrea_gigas_22   (Pacific oyster)   48 46
Lottia_gigantea_   (Owl limpet)   88 77
Helobdella_robusta_ 79 75
Capitella_sp._I_ 84 76
Danaus_plexippus_OGS1.0   (Monarch butterfly)   40 35
Heliconius_melpomene_   (Postman butterfly)   23 20
Bombyx_mori_   (Domestic silkworm)   86 77
Nasonia_vitripennis_   (Jewel wasp)   58 53
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   38 25
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   162 151
Linepithema_humile_v1.1   (Argentine ant)   45 44
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   24 23
Solenopsis_invicta_v.2.2.3   (Red fire ant)   39 38
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   30 27
Atta_cephalotes_v1.1 18 15
Camponotus_floridanus_v3.3   (Florida carpenter ant)   127 124
Lucilia_cuprina   (Australian sheep blowfly)   14 14
Drosophila_grimshawi_1.3 2 2
Drosophila_willistoni_1.3 8 8
Drosophila_pseudoobscura_2.13 14 10
Drosophila_persimilis_1.3 2 2
Drosophila_suzukii 13 10
Drosophila_yakuba_1.3 5 5
Drosophila_simulans_1.3 2 2
Drosophila_sechellia_1.3 3 3
Drosophila_melanogaster_76_5   (Fruit fly)   22 15
Drosophila_erecta_1.3 3 3
Drosophila_ananassae_1.3 2 2
Drosophila_virilis_1.2 1 1
Drosophila_mojavensis_1.3 1 1
Megaselia_scalaris_22 12 9
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   28 27
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   39 35
Anopheles_darlingi_22   (American malaria mosquito)   12 12
Anopheles_gambiae_49_3j   (African malaria mosquito)   9 6
Tribolium_castaneum_3.0   (Red flour beetle)   140 128
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   17 13
Acyrthosiphon_pisum_   (Pea aphid)   36 31
Rhodnius_prolixus_22 55 47
Daphnia_pulex_   (Common water flea)   204 201
Strigamia_maritima_22 148 134
Sarcoptes_scabiei 10 9
Tetranychus_urticae_   (Two-spotted spider mite)   29 20
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   42 34
Pristionchus_pacificus_ 37 30
Meloidogyne_incognita_   (Southern root-knot nematode)   101 90
Meloidogyne_hapla_ 53 49
Onchocerca_volvulus_22 9 8
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   15 12
Caenorhabditis_japonica_ 155 148
Caenorhabditis_brenneri_ 53 44
Caenorhabditis_remanei_ 124 111
Caenorhabditis_elegans_76_235   (Roundworm)   35 26
Caenorhabditis_briggsae_2 43 39
Trichinella_spiralis_22 63 61
Hymenolepis_microstoma_ 15 10
Echinococcus_multilocularis_ 12 10
Echinococcus_granulosus_ 8 7
Taenia_solium_   (Pork tapeworm)   9 6
Schistosoma_mansoni_ 22 16
Mnemiopsis_leidyi   (Sea walnut)   68 58
Thelohanellus_kitauei 123 123
Acropora_digitifera_v1.0 158 136
Nematostella_vectensis_1.0   (Starlet sea anemone)   37 26
Hydra_vulgaris 73 60
Amphimedon_queenslandica 94 88
Trichoplax_adhaerens_ 17 12
Proterospongia_sp._ATCC_50818_ 14 13
Monosiga_brevicollis_ 10 8
Sphaeroforma_arctica_JP610_ 32 27
Capsaspora_owczarzaki_ATCC_30864_ 19 10
Conidiobolus_coronatus_NRRL28638_v1.0 20 15
Mortierella_verticillata_NRRL_6337_ 36 22
Phycomyces_blakesleeanus_ 49 48
Rhizopus_oryzae_RA_99-880_ 119 113
Mucor_circinelloides_ 35 30
Rhizomucor_miehei_CAU432_ 26 22
Malassezia_globosa_CBS_7966_ 14 8
Sporisorium_reilianum_22 19 12
Ustilago_maydis_ 17 11
Mixia_osmundae_IAM_14324_v1.0 13 10
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 59 55
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 165 159
Melampsora_laricis-populina_ 41 41
Rhodotorula_graminis_WP1_v1.0 12 9
Sporobolomyces_roseus_IAM_13481_ 9 7
Microbotryum_violaceum_22 25 15
Wallemia_sebi_v1.0 8 8
Sphaerobolus_stellatus_v1.0 197 193
Piloderma_croceum_F_1598_v1.0 50 48
Serpula_lacrymans_var._lacrymans_S7.9_ 171 169
Coniophora_puteana 17 15
Hydnomerulius_pinastri_v2.0 22 19
Paxillus_rubicundulus_Ve08.2h10_v1.0 26 22
Pisolithus_microcarpus_441_v1.0 80 75
Pisolithus_tinctorius_Marx_270_v1.0 172 169
Scleroderma_citrinum_Foug_A_v1.0 109 105
Coprinopsis_cinerea_okayama7_130_v3 24 18
Pleurotus_ostreatus_   (Oyster mushroom)   30 29
Amanita_thiersii_Skay4041_v1.0 232 230
Amanita_muscaria_Koide_v1.0   (Fly agaric)   55 50
Galerina_marginata_v1.0 46 42
Hebeloma_cylindrosporum_h7_v2.0 20 19
Laccaria_bicolor_S238N-H82_ 34 33
Agaricus_bisporus_var._bisporus_ 91 88
Schizophyllum_commune_ 33 32
Stereum_hirsutum_FP-91666_SS1__v1.0 34 27
Heterobasidion_annosum_ 72 70
Gloeophyllum_trabeumv1.0 23 21
Punctularia_strigosozonata_v1.0 29 27
Sebacina_vermifera_MAFF_305830_v1.0 17 13
Fomitiporia_mediterranea_v1.0 19 12
Tulasnella_calospora_AL13/4D_v1.0 13 12
Postia_placenta_ 155 146
Wolfiporia_cocos_MD-104_SS10__v1.0 48 47
Fomitopsis_pinicolav1.0 30 25
Fomitopsis_pinicola_FP-58527_SS1_v3.0 23 18
Phanerochaete_chrysosporium_RP-78_2.1 48 44
Dichomitus_squalens 35 27
Trametes_versicolor_v1.0 32 31
Tremella_mesenterica_   (Witches' butter)   158 154
Daldinia_eschscholzii_EC12_v1.0 10 10
Apiospora_montagnei_NRRL_25634_v1.0 20 14
Magnaporthe_poae_ATCC_64411_22 21 11
Magnaporthe_grisea_70-15_ 17 9
Podospora_anserina_ 17 9
Sporotrichum_thermophile_ATCC_42464_ 6 6
Thielavia_terrestris_NRRL_8126_ 14 11
Chaetomium_globosum_CBS_148.51_ 60 50
Neurospora_tetrasperma_ 5 5
Neurospora_discreta_FGSC_8579_ 3 3
Neurospora_crassa_OR74A_ 20 10
Cryphonectria_parasitica_   (Chestnut blight fungus)   3 3
Verticillium_albo-atrum_VaMs.102_ 16 9
Verticillium_dahliae_VdLs.17_ 13 7
Acremonium_alcalophilumv_1.0 4 4
Glomerella_graminicola_22 23 12
Fusarium_graminearum_ 16 8
Nectria_haematococca_mpVI_ 5 5
Fusarium_oxysporum_f._sp._lycopersici_4286_ 16 11
Fusarium_verticillioides_7600_ 18 9
Trichoderma_asperellum_CBS_433.97_v1.0 7 5
Trichoderma_atroviride_ 9 5
Trichoderma_citrinoviride_v1.0 4 4
Trichoderma_reesei_1.2 2 2
Trichoderma_virens_Gv29-8_ 6 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 6 6
Trichoderma_harzianum_CBS_226.95_v1.0 19 11
Amorphotheca_resinae_v1.0   (Creosote fungus)   9 8
Botrytis_cinerea_B05.10_ 39 29
Sclerotinia_sclerotiorum_ 68 58
Blumeria_graminis_22 17 9
Didymella_exigua_CBS_183.55_v1.0 12 11
Leptosphaeria_maculans_22 17 7
Setosphaeria_turcica_v1.0 12 12
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2 2
Cochliobolus_victoriae_FI3_v1.0 3 3
Cochliobolus_carbonum_26-R-13_v1.0 4 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   27 27
Alternaria_brassicicola_ 17 7
Cochliobolus_lunatus_m118_v2.0 5 4
Pyrenophora_teres_f._teres_22 27 19
Pyrenophora_tritici-repentis_ 19 11
Stagonospora_nodorum_ 25 10
Mycosphaerella_graminicola_IPO323_ 4 4
Zasmidium_cellare_ATCC_36951_v1.0 5 5
Dothistroma_septosporum 5 5
Septoria_musiva_v1.0 4 4
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 9 7
Paracoccidioides_brasiliensis_Pb18_ 32 26
Coccidioides_posadasii_RMSCC_3488_ 12 6
Coccidioides_immitis_RS_ 18 7
Ajellomyces_dermatitidis_SLH14081_ 19 9
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 16 9
Microsporum_canis_CBS_113480_ 15 6
Trichophyton_equinum_CBS_127.97_ 13 7
Trichophyton_verrucosum_HKI_0517_ 5 5
Arthroderma_benhamiae_CBS_112371_ 6 6
Trichophyton_tonsurans_CBS_112818_ 17 7
Trichophyton_rubrum_CBS_118892_ 16 7
Uncinocarpus_reesii_1704_ 10 6
Aspergillus_zonatus_v1.0 10 5
Penicillium_chrysogenum_Wisconsin_54-1255_ 21 10
Penicillium_chrysogenum_v1.0 9 8
Aspergillus_acidus_v1.0 10 10
Aspergillus_fumigatus_Af293 14 6
Aspergillus_brasiliensis_v1.0 8 7
Aspergillus_nidulans_FGSC_A4_ 16 9
Aspergillus_sydowii_v1.0 9 9
Aspergillus_versicolor_v1.0 6 4
Aspergillus_glaucus 15 10
Neosartorya_fischeri_NRRL_181_ 17 8
Aspergillus_terreus_NIH2624_ 14 6
Aspergillus_tubingensis_v1.0 4 3
Aspergillus_wentii_v1.0 8 7
Aspergillus_oryzae_RIB40_ 13 10
Aspergillus_niger_22 14 5
Aspergillus_niger_ATCC_1015_ 2 2
Aspergillus_flavus_NRRL3357_ 12 7
Aspergillus_clavatus_NRRL_1_ 16 6
Penicillium_marneffei_ATCC_18224_ 30 20
Tuber_melanosporum_Mel28_22 10 6
Tuber_melanosporum_Vittad_   (Perigord truffle)   29 23
Hansenula_polymorpha_v2.0 3 2
Dekkera_bruxellensis_CBS_2499_v2.0 9 9
Pichia_membranifaciensv1.0 5 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4 4
Candida_dubliniensis_CD36_ 13 10
Candida_tropicalis_MYA-3404_ 4 4
Candida_parapsilosis_ 8 5
Candida_albicans_SC5314 10 7
Lodderomyces_elongisporus_NRRL_YB-4239_ 18 15
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3 3
Pichia_stipitis_CBS_6054_ 5 4
Candida_guilliermondii_ATCC_6260_ 6 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 4 4
Debaromyces_hansenii 7 4
Wickerhamomyces_anomalus 5 5
Pichia_pastoris_GS115_ 8 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3 3
Yarrowia_lipolytica_CLIB122 13 8
Candida_lusitaniae_ATCC_42720_ 6 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4 4
Vanderwaltozyma_polyspora_DSM_70294_ 15 11
Candida_glabrata_CBS138 13 7
Kluyveromyces_thermotolerans_CBS_6340 10 5
Lachancea_kluyveri_ 10 6
Kluyveromyces_waltii 20 14
Ashbya_gossypii_ATCC_10895_ 10 6
Zygosaccharomyces_rouxii_ 9 6
Saccharomyces_mikatae_MIT 13 8
Saccharomyces_paradoxus_MIT 13 7
Saccharomyces_cerevisiae_76   (Baker's yeast)   17 11
Saccharomyces_bayanus_MIT 11 6
Kluyveromyces_lactis 6 4
Schizosaccharomyces_cryophilus_OY26_22 10 5
Schizosaccharomyces_octosporus_yFS286_ 10 5
Schizosaccharomyces_japonicus_yFS275_ 16 10
Schizosaccharomyces_pombe   (Fission yeast)   10 5
Catenaria_anguillulae_PL171_v1.0 46 42
Allomyces_macrogynus_ATCC_38327_ 45 39
Spizellomyces_punctatus_DAOM_BR117_ 33 31
Dictyostelium_discoideum 15 12
Dictyostelium_purpureum_ 25 25
Entamoeba_dispar_1.2 12 9
Entamoeba_invadens_1.2 48 42
Entamoeba_histolytica_1 13 10
Selaginella_moellendorffii_ 45 43
Pinus_taeda   (Loblolly pine)   75 68
Picea_abies   (Norway spruce)   43 32
Eucalyptus_grandis_v201   (Rose gum)   91 81
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1047 980
Gossypium_raimondii_v221 235 183
Citrus_clementina_v165 96 71
Citrus_sinensis_v154   (Sweet orange)   131 100
Thellungiella_halophila_v173 111 90
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   86 61
Capsella_rubella_v183 72 46
Arabidopsis_lyrata_   (Lyrate rockcress)   62 45
Arabidopsis_thaliana_10   (Thale cress)   78 54
Carica_papaya_   (Papaya)   42 33
Medicago_truncatula_   (Barrel medic)   26 25
Phaseolus_vulgaris_v186   (French bean)   58 47
Glycine_max_v109   (Soybean)   163 144
Cucumis_sativus_v122   (Cucumber)   85 68
Fragaria_vesca_   (Wild strawberry)   161 137
Malus_domestica_v196   (Apple)   166 127
Prunus_persica_v139   (Peach)   119 105
Linum_usitatissimum_v200   (Flax)   80 66
Manihot_esculenta_v147   (Cassava)   134 107
Populus_trichocarpa_v156   (Black cottonwood)   138 110
Vitis_vinifera_   (Wine grape)   55 38
Mimulus_guttatus_v140   (Spotted monkey flower)   48 37
Solanum_lycopersicum_v.2.3   (Tomato)   85 73
Solanum_tuberosum_   (Potato)   194 160
Actinidia_chinensis_Hongyang_ 136 108
Aquilegia_coerulea_v195 116 89
Triticum_urartu_22 90 73
Triticum_aestivum_22   (Bread wheat)   193 151
Aegilops_tauschii_22 54 44
Brachypodium_distachyon_   (Stiff brome)   116 89
Oryza_barthii_22   (African wild rice)   63 45
Oryza_meridionalis_22 68 43
Oryza_glumaepatula_22 75 61
Oryza_glaberrima   (African rice)   71 54
Oryza_punctata_22 104 75
Oryza_nivara_22 86 64
Oryza_brachyantha_22   (Malo sina)   73 61
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2245 2066
Oryza_sativa_v193   (Rice)   2216 2042
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   81 57
Panicum_virgatum_v202   (Switchgrass)   180 153
Setaria_italica_v164   (Foxtail millet)   124 100
Zea_mays_subsp._mays_   (Maize)   185 141
Zea_mays_v181   (Maize)   180 137
Sorghum_bicolor_   (Sorghum)   251 218
Musa_balbisiana   (Balbis banana)   937 908
Musa_acuminata_22   (Wild Malaysian banana)   32 32
Amborella_trichopoda_22 71 53
Physcomitrella_patens 177 169
Coccomyxa_subellipsoidea_sp._C-169_v2 15 13
Asterochloris_sp._Cgr/DA1pho_v1.0 7 7
Chlorella_variabilis_sp._NC64A_ 15 13
Chlorella_vulgaris_ 13 12
Volvox_carteri_f._nagariensis_ 35 32
Volvox_carteri_v199 30 30
Chlamydomonas_reinhardtii_4.0 10 10
Ostreococcus_sp._RCC809_ 8 5
Ostreococcus_lucimarinus_CCE9901_ 16 7
Ostreococcus_tauri_ 16 9
Bathycoccus_prasinos_ 20 13
Micromonas_sp._RCC299_ 10 8
Micromonas_pusilla_CCMP1545_v3.0 27 16
Cyanidioschyzon_merolae_strain_10D_22 4 3
Cyanidioschyzon_merolae 4 3
Porphyridium_purpureum_02_2012 36 34
Thecamonas_trahens_ATCC_50062_ 26 15
Bigelowiella_natans_CCMP2755_22 9 9
Giardia_lamblia_2.3 1 1
Cyanophora_paradoxa_ 28 25
Leishmania_mexicana_2.4 21 10
Leishmania_major_strain_Friedlin_ 21 9
Leishmania_infantum_JPCM5_2.4 23 10
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 23 9
Trypanosoma_vivax_ 39 17
Trypanosoma_cruzi_strain_CL_Brener 25 12
Trypanosoma_congolense_2.4 21 14
Trypanosoma_brucei_gambiense_v4.1 21 11
Trypanosoma_brucei_TREU927_v4.1 20 10
Ectocarpus_siliculosus 11 10
Aureococcus_anophagefferens_ 10 8
Albugo_laibachii_22 56 53
Pythium_iwayamai_DAOM_BR242034_22 17 15
Pythium_arrhenomanes_ATCC_12531_22 10 10
Pythium_ultimum_v1.7-2 63 59
Pythium_aphanidermatum_DAOM_BR444_22 19 14
Pythium_irregulare_DAOM_BR486_22 18 14
Pythium_vexans_DAOM_BR484_22 20 15
Phytophthora_ramorum_1.1   (Sudden oak death agent)   166 157
Phytophthora_sojae_1.1 262 252
Phytophthora_infestans_T30-4_ 118 107
Phytophthora_capsici_ 36 35
Hyaloperonospora_arabidopsidis_22 13 13
Phaeodactylum_tricornutumCCAP_1055/1 10 8
Fragilariopsis_cylindrus 33 29
Thalassiosira_pseudonana_CCMP1335 12 10
Perkinsus_marinus_ATCC_50983_ 184 154
Paramecium_tetraurelia_ 42 38
Tetrahymena_thermophila_SB210_1_ 43 37
Ichthyophthirius_multifiliis_strain_G5_ 13 9
Cryptosporidium_hominis 3 3
Cryptosporidium_muris 4 4
Cryptosporidium_parvum_Iowa_II 3 3
Neospora_caninum 5 4
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 4 4
Toxoplasma_gondii_GT1 3 3
Babesia_bovis_T2Bo_ 8 6
Theileria_parva__ 3 3
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 405 400
Naegleria_gruberi_ 5 5
Trichomonas_vaginalis_ 4 3
Guillardia_theta_CCMP2712_v1.0_ 18 16
Emiliania_huxleyi_CCMP1516_ 40 36
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 1 1
Thioalkalivibrio_sp._K90mix 2 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   177 158
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   20 13
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   21 11
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   11 9
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   31 23
Cryptococcus_neoformans_var._grubii_H99_ 18 12
Cryptococcus_neoformans_B-3501A_ 22 14
Cryptococcus_neoformans_JEC21_ 19 11
Paracoccidioides_brasiliensis_Pb01_ 27 22
Paracoccidioides_brasiliensis_Pb03_ 16 11
Coccidioides_posadasii_str._Silveira_ 19 10
Coccidioides_immitis_RMSCC_3703_ 10 6
Coccidioides_immitis_RMSCC_2394_ 19 10
Coccidioides_immitis_H538.4_ 13 8
Ajellomyces_dermatitidis_ER-3_ 23 13
Histoplasma_capsulatum_H143 10 5
Histoplasma_capsulatum_H88 14 7
Histoplasma_capsulatum_G186AR 15 7
Aspergillus_fumigatus_A1163_ 14 6
Candida_albicans_WO-1_ 9 6
Saccharomyces_cerevisiae_UC5 16 10
Saccharomyces_cerevisiae_PW5 16 10
Saccharomyces_cerevisiae_FL100 6 4
Saccharomyces_cerevisiae_CLIB382 4 2
Saccharomyces_cerevisiae_CLIB324 10 5
Saccharomyces_cerevisiae_CBS7960 13 7
Saccharomyces_cerevisiae_YJM269 14 8
Saccharomyces_cerevisiae_T7 15 9
Saccharomyces_cerevisiae_FostersB 10 6
Saccharomyces_cerevisiae_FostersO 9 6
Saccharomyces_cerevisiae_VL3 13 6
Saccharomyces_cerevisiae_Vin13 11 5
Saccharomyces_cerevisiae_LalvinQA23 12 6
Saccharomyces_cerevisiae_AWRI796 11 6
Saccharomyces_cerevisiae_Sigma1278b 16 10
Saccharomyces_cerevisiae_W303 17 11
Saccharomyces_cerevisiae_JAY291 15 9
Saccharomyces_cerevisiae_AWRI1631 13 7
Saccharomyces_cerevisiae_YPS163 6 4
Saccharomyces_cerevisiae_M22 6 4
Saccharomyces_cerevisiae_T73 8 4
Saccharomyces_cerevisiae_CLIB215 11 6
Saccharomyces_cerevisiae_Y10 6 3
Saccharomyces_cerevisiae_YJM789_ 12 6
Saccharomyces_cerevisiae_YJM789 13 7
Saccharomyces_cerevisiae_RM11-1a 13 7
Saccharomyces_cerevisiae_RM11-1a_ 13 7
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   18 12
Schizosaccharomyces_pombe_972h-_ 10 5
Batrachochytrium_dendrobatidis_JEL423_ 25 22
Batrachochytrium_dendrobatidis_JAM81_ 9 8
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   799 771
Hordeum_vulgare_22   (Domesticated barley)   171 124
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   312 276
Trypanosoma_brucei_Lister_427_v4.1 20 10
Neospora_caninum_Nc-Liverpool_6.2 5 4
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   31 22
Pan_troglodytes_69_2.1.4   (Chimpanzee)   27 19
Gorilla_gorilla_69_3.1   (Western gorilla)   26 19
Pongo_abelii_69_2   (Sumatran orangutan)   25 18
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   24 17
Macaca_mulatta_69_1   (Rhesus monkey)   28 21
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   27 21
Otolemur_garnettii_69_3   (Small-eared galago)   39 26
Microcebus_murinus_69_1   (Gray mouse lemur)   19 15
Rattus_norvegicus_69_3.4   (Norway rat)   31 24
Mus_musculus_69_38   (House mouse)   31 21
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   31 17
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   28 18
Cavia_porcellus_69_3   (Domestic guinea pig)   31 21
Oryctolagus_cuniculus_69_2   (Rabbit)   31 22
Ochotona_princeps_69   (American pika)   20 15
Tupaia_belangeri_69   (Northern tree shrew)   15 10
Sus_scrofa_69_10.2   (Pig)   38 31
Bos_taurus_69_3.1   (Cattle)   33 22
Vicugna_pacos_69_1   (Alpaca)   21 15
Tursiops_truncatus_69_1   (Bottlenose dolphin)   26 18
Mustela_putorius_furo_69_1.0   (Domestic ferret)   25 18
Ailuropoda_melanoleuca_69_1   (Giant panda)   29 22
Canis_familiaris_69_3.1   (Dog)   32 21
Felis_catus_69   (Domestic cat)   16 11
Equus_caballus_69_2   (Horse)   27 20
Myotis_lucifugus_69_2.0   (Little brown bat)   38 27
Pteropus_vampyrus_69_1   (Large flying fox)   21 15
Sorex_araneus_69_1   (European shrew)   20 13
Erinaceus_europaeus_69   (Western European hedgehog)   17 13
Procavia_capensis_69_1   (Cape rock hyrax)   17 13
Loxodonta_africana_69_3   (African savanna elephant)   27 19
Echinops_telfairi_69   (Small Madagascar hedgehog)   21 12
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   14 12
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   24 15
Macropus_eugenii_69_1.0   (Tammar wallaby)   22 15
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   49 40
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   58 49
Ornithorhynchus_anatinus_69_5   (Platypus)   19 15
Petromyzon_marinus_69_7.0   (Sea lamprey)   10 7
Meleagris_gallopavo_69_2   (Turkey)   22 16
Gallus_gallus_69_2   (Chicken)   23 17
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   23 16
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   34 28
Anolis_carolinensis_69_2.0   (Green anole)   84 79
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   117 105
Latimeria_chalumnae_69_1   (Coelacanth)   61 54
Gadus_morhua_69_1   (Atlantic cod)   29 22
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   25 20
Takifugu_rubripes_69_4   (Torafugu)   29 23
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   39 33
Oryzias_latipes_69_1   (Japanese medaka)   33 28
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   30 24
Oreochromis_niloticus_69_1.0   (Nile tilapia)   32 25
Danio_rerio_69_9   (Zebrafish)   56 48
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   20 12
Ciona_intestinalis_69   (Vase tunicate)   24 18
Drosophila_melanogaster_69_5   (Fruit fly)   15 11
Caenorhabditis_elegans_69_215   (Roundworm)   27 19
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   17 11
Arabidopsis_thaliana_10   (Thale cress)   58 38

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   114 75
Homo_sapiens__(NCBI_version)   (Human)   71 41
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   31 21
Heliconius_numata__(Incomplete) 7 6
Loa_loa_v3.3_(Request)   (Eye worm)   12 9
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   16 13
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   11 8
Moniliophthora_perniciosa_FA553__(Genome_survey) 30 30
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 3 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   11 6
Lotus_japonicus__(Early_assembly) 163 115
Malus_x_domestica_(Duplicate)   (Apple)   166 127
Ricinus_communis__(Early_assembly)   (Castor bean)   46 34
Nicotiana_benthamiana_0.4.4_(Early_draft) 126 103
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   84 73
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   85 73
Phoenix_dactylifera__(Early_draft)   (Date palm)   38 36
Core_Eukaryotic_Genes_458_(CEGMA) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 119 119
TargetDB__(Targets) 127 78
Protein_Data_Bank_(all_PDB_sequenc) 111 105
PDB_chains_(SCOP_1.75)_(PDB) 13 12
STRING_v9.0.5_(STRING) 6544 5607
UniProt__viral_sequences_(Viral) 18929 18889
NCBI_2017_08_genome 48276 36954
NCBI_viral_sequences_(Viral) 137 128
Uniprot_2018_03_genome 102777 91155
Protozoadb_2010_08_(Protozoadb) 262 161

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]