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Domain combinations for RING/U-box superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a RING/U-box domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   1389 1295
Pan_troglodytes_76_2.1.4   (Chimpanzee)   357 321
Gorilla_gorilla_76_3.1   (Western gorilla)   461 422
Pongo_abelii_76_2   (Sumatran orangutan)   360 325
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   371 326
Papio_anubis_76   (Olive baboon)   380 343
Macaca_mulatta_76_1   (Rhesus monkey)   609 555
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   709 647
Otolemur_garnettii_76_3   (Small-eared galago)   366 330
Microcebus_murinus_76_1   (Gray mouse lemur)   229 213
Rattus_norvegicus_76_5.0   (Norway rat)   361 329
Mus_musculus_76_38   (House mouse)   820 752
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   232 214
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   332 305
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   326 285
Cavia_porcellus_76_3   (Domestic guinea pig)   324 292
Oryctolagus_cuniculus_76_2   (Rabbit)   355 319
Ochotona_princeps_76   (American pika)   258 237
Tupaia_belangeri_76   (Northern tree shrew)   206 189
Sus_scrofa_76_10.2   (Pig)   412 369
Bos_taurus_76_3.1   (Cattle)   362 326
Ovis_aries_76_3.1   (Sheep)   362 326
Vicugna_pacos_76_1   (Alpaca)   185 165
Tursiops_truncatus_76_1   (Bottlenose dolphin)   297 266
Mustela_putorius_furo_76_1.0   (Domestic ferret)   323 290
Ailuropoda_melanoleuca_76_1   (Giant panda)   361 322
Canis_familiaris_76_3.1   (Dog)   415 372
Felis_catus_76_6.2   (Domestic cat)   327 296
Equus_caballus_76_2   (Horse)   343 307
Myotis_lucifugus_76_2.0   (Little brown bat)   353 319
Pteropus_vampyrus_76_1   (Large flying fox)   299 265
Sorex_araneus_76_1   (European shrew)   213 190
Erinaceus_europaeus_76   (Western European hedgehog)   214 202
Procavia_capensis_76_1   (Cape rock hyrax)   241 216
Loxodonta_africana_76_3   (African savanna elephant)   436 400
Echinops_telfairi_76   (Small Madagascar hedgehog)   228 208
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   444 388
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   202 184
Macropus_eugenii_76_1.0   (Tammar wallaby)   216 200
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   392 351
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   399 360
Ornithorhynchus_anatinus_76_5   (Platypus)   259 238
Saccoglossus_kowalevskii_v3.0 558 512
Petromyzon_marinus_76_7.0   (Sea lamprey)   170 155
Meleagris_gallopavo_76_2   (Turkey)   262 238
Gallus_gallus_76_4   (Chicken)   298 266
Anas_platyrhynchos_76_1.0   (Mallard)   253 229
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   256 228
Ficedula_albicollis_76_1.0   (Collared flycatcher)   270 241
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   378 353
Anolis_carolinensis_76_2.0   (Green anole)   326 288
Xenopus_laevis_   (African clawed frog)   652 593
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   472 415
Latimeria_chalumnae_76_1   (Coelacanth)   484 444
Lepisosteus_oculatus_76   (Spotted gar)   469 417
Gadus_morhua_76_1   (Atlantic cod)   401 361
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   400 354
Takifugu_rubripes_76_4   (Torafugu)   1021 919
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   550 498
Oryzias_latipes_76_1   (Japanese medaka)   461 402
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   389 342
Poecilia_formosa_76   (Amazon molly)   507 449
Oreochromis_niloticus_76_1.0   (Nile tilapia)   621 568
Astyanax_mexicanus_76   (Mexican tetra)   441 397
Danio_rerio_76_9   (Zebrafish)   794 717
Oikopleura_dioica 194 182
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   201 177
Ciona_intestinalis_76   (Vase tunicate)   161 141
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   610 569
Adineta_vaga 821 650
Octopus_bimaculoides_280 315 276
Crassostrea_gigas_22   (Pacific oyster)   352 314
Lottia_gigantea_   (Owl limpet)   333 288
Helobdella_robusta_ 326 302
Capitella_sp._I_ 265 240
Danaus_plexippus_OGS1.0   (Monarch butterfly)   138 125
Heliconius_melpomene_   (Postman butterfly)   118 110
Bombyx_mori_   (Domestic silkworm)   89 83
Nasonia_vitripennis_   (Jewel wasp)   144 120
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   194 178
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   158 142
Linepithema_humile_v1.1   (Argentine ant)   162 141
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   158 139
Solenopsis_invicta_v.2.2.3   (Red fire ant)   146 130
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   161 141
Atta_cephalotes_v1.1 151 133
Camponotus_floridanus_v3.3   (Florida carpenter ant)   165 146
Lucilia_cuprina   (Australian sheep blowfly)   130 120
Drosophila_grimshawi_1.3 162 144
Drosophila_willistoni_1.3 160 143
Drosophila_pseudoobscura_2.13 193 174
Drosophila_persimilis_1.3 179 167
Drosophila_suzukii 170 149
Drosophila_yakuba_1.3 163 149
Drosophila_simulans_1.3 135 124
Drosophila_sechellia_1.3 159 145
Drosophila_melanogaster_76_5   (Fruit fly)   360 318
Drosophila_erecta_1.3 162 148
Drosophila_ananassae_1.3 170 154
Drosophila_virilis_1.2 163 148
Drosophila_mojavensis_1.3 161 145
Megaselia_scalaris_22 53 47
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   195 162
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   217 170
Anopheles_darlingi_22   (American malaria mosquito)   100 91
Anopheles_gambiae_49_3j   (African malaria mosquito)   144 128
Tribolium_castaneum_3.0   (Red flour beetle)   174 155
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   158 137
Acyrthosiphon_pisum_   (Pea aphid)   130 115
Rhodnius_prolixus_22 130 117
Daphnia_pulex_   (Common water flea)   249 224
Strigamia_maritima_22 216 188
Sarcoptes_scabiei 86 78
Tetranychus_urticae_   (Two-spotted spider mite)   142 125
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   175 158
Pristionchus_pacificus_ 303 254
Meloidogyne_incognita_   (Southern root-knot nematode)   262 226
Meloidogyne_hapla_ 122 105
Onchocerca_volvulus_22 132 117
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   158 136
Caenorhabditis_japonica_ 138 123
Caenorhabditis_brenneri_ 498 407
Caenorhabditis_remanei_ 409 356
Caenorhabditis_elegans_76_235   (Roundworm)   323 263
Caenorhabditis_briggsae_2 236 208
Trichinella_spiralis_22 77 69
Hymenolepis_microstoma_ 120 105
Echinococcus_multilocularis_ 124 110
Echinococcus_granulosus_ 116 103
Taenia_solium_   (Pork tapeworm)   124 113
Schistosoma_mansoni_ 132 118
Mnemiopsis_leidyi   (Sea walnut)   120 113
Thelohanellus_kitauei 33 29
Acropora_digitifera_v1.0 286 253
Nematostella_vectensis_1.0   (Starlet sea anemone)   328 294
Hydra_vulgaris 167 155
Amphimedon_queenslandica 688 645
Trichoplax_adhaerens_ 114 99
Proterospongia_sp._ATCC_50818_ 124 113
Monosiga_brevicollis_ 110 100
Sphaeroforma_arctica_JP610_ 106 104
Capsaspora_owczarzaki_ATCC_30864_ 134 126
Conidiobolus_coronatus_NRRL28638_v1.0 67 61
Mortierella_verticillata_NRRL_6337_ 128 113
Phycomyces_blakesleeanus_ 109 96
Rhizopus_oryzae_RA_99-880_ 84 74
Mucor_circinelloides_ 119 103
Rhizomucor_miehei_CAU432_ 96 84
Malassezia_globosa_CBS_7966_ 68 64
Sporisorium_reilianum_22 65 58
Ustilago_maydis_ 63 56
Mixia_osmundae_IAM_14324_v1.0 69 58
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 96 84
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 179 163
Melampsora_laricis-populina_ 96 87
Rhodotorula_graminis_WP1_v1.0 73 63
Sporobolomyces_roseus_IAM_13481_ 50 41
Microbotryum_violaceum_22 84 67
Wallemia_sebi_v1.0 51 42
Sphaerobolus_stellatus_v1.0 160 123
Piloderma_croceum_F_1598_v1.0 166 129
Serpula_lacrymans_var._lacrymans_S7.9_ 90 75
Coniophora_puteana 102 82
Hydnomerulius_pinastri_v2.0 117 95
Paxillus_rubicundulus_Ve08.2h10_v1.0 120 98
Pisolithus_microcarpus_441_v1.0 122 99
Pisolithus_tinctorius_Marx_270_v1.0 131 105
Scleroderma_citrinum_Foug_A_v1.0 111 91
Coprinopsis_cinerea_okayama7_130_v3 101 84
Pleurotus_ostreatus_   (Oyster mushroom)   111 91
Amanita_thiersii_Skay4041_v1.0 100 84
Amanita_muscaria_Koide_v1.0   (Fly agaric)   133 103
Galerina_marginata_v1.0 153 120
Hebeloma_cylindrosporum_h7_v2.0 118 94
Laccaria_bicolor_S238N-H82_ 140 107
Agaricus_bisporus_var._bisporus_ 91 71
Schizophyllum_commune_ 135 106
Stereum_hirsutum_FP-91666_SS1__v1.0 112 91
Heterobasidion_annosum_ 99 78
Gloeophyllum_trabeumv1.0 102 83
Punctularia_strigosozonata_v1.0 114 92
Sebacina_vermifera_MAFF_305830_v1.0 152 108
Fomitiporia_mediterranea_v1.0 90 75
Tulasnella_calospora_AL13/4D_v1.0 130 107
Postia_placenta_ 133 109
Wolfiporia_cocos_MD-104_SS10__v1.0 117 94
Fomitopsis_pinicolav1.0 125 107
Fomitopsis_pinicola_FP-58527_SS1_v3.0 122 105
Phanerochaete_chrysosporium_RP-78_2.1 83 59
Dichomitus_squalens 125 96
Trametes_versicolor_v1.0 136 105
Tremella_mesenterica_   (Witches' butter)   66 56
Daldinia_eschscholzii_EC12_v1.0 100 81
Apiospora_montagnei_NRRL_25634_v1.0 116 98
Magnaporthe_poae_ATCC_64411_22 85 68
Magnaporthe_grisea_70-15_ 83 71
Podospora_anserina_ 94 81
Sporotrichum_thermophile_ATCC_42464_ 80 67
Thielavia_terrestris_NRRL_8126_ 83 72
Chaetomium_globosum_CBS_148.51_ 83 68
Neurospora_tetrasperma_ 90 73
Neurospora_discreta_FGSC_8579_ 90 76
Neurospora_crassa_OR74A_ 89 76
Cryphonectria_parasitica_   (Chestnut blight fungus)   86 71
Verticillium_albo-atrum_VaMs.102_ 77 66
Verticillium_dahliae_VdLs.17_ 83 71
Acremonium_alcalophilumv_1.0 75 66
Glomerella_graminicola_22 104 87
Fusarium_graminearum_ 90 80
Nectria_haematococca_mpVI_ 102 84
Fusarium_oxysporum_f._sp._lycopersici_4286_ 91 84
Fusarium_verticillioides_7600_ 83 73
Trichoderma_asperellum_CBS_433.97_v1.0 96 77
Trichoderma_atroviride_ 84 66
Trichoderma_citrinoviride_v1.0 88 70
Trichoderma_reesei_1.2 87 70
Trichoderma_virens_Gv29-8_ 88 69
Trichoderma_longibrachiatum_ATCC_18648_v1.0 85 68
Trichoderma_harzianum_CBS_226.95_v1.0 95 77
Amorphotheca_resinae_v1.0   (Creosote fungus)   105 82
Botrytis_cinerea_B05.10_ 100 81
Sclerotinia_sclerotiorum_ 99 81
Blumeria_graminis_22 72 60
Didymella_exigua_CBS_183.55_v1.0 120 101
Leptosphaeria_maculans_22 109 94
Setosphaeria_turcica_v1.0 111 91
Cochliobolus_miyabeanus_ATCC_44560_v1.0 106 91
Cochliobolus_victoriae_FI3_v1.0 106 93
Cochliobolus_carbonum_26-R-13_v1.0 103 90
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   86 74
Alternaria_brassicicola_ 95 79
Cochliobolus_lunatus_m118_v2.0 105 89
Pyrenophora_teres_f._teres_22 121 102
Pyrenophora_tritici-repentis_ 108 92
Stagonospora_nodorum_ 146 130
Mycosphaerella_graminicola_IPO323_ 121 101
Zasmidium_cellare_ATCC_36951_v1.0 147 125
Dothistroma_septosporum 123 105
Septoria_musiva_v1.0 108 90
Mycosphaerella_fijiensis_CIRAD86_ 97 83
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 110 88
Paracoccidioides_brasiliensis_Pb18_ 69 56
Coccidioides_posadasii_RMSCC_3488_ 87 75
Coccidioides_immitis_RS_ 93 81
Ajellomyces_dermatitidis_SLH14081_ 84 74
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 74 66
Microsporum_canis_CBS_113480_ 80 73
Trichophyton_equinum_CBS_127.97_ 84 72
Trichophyton_verrucosum_HKI_0517_ 60 54
Arthroderma_benhamiae_CBS_112371_ 63 55
Trichophyton_tonsurans_CBS_112818_ 84 74
Trichophyton_rubrum_CBS_118892_ 83 73
Uncinocarpus_reesii_1704_ 72 64
Aspergillus_zonatus_v1.0 87 76
Penicillium_chrysogenum_Wisconsin_54-1255_ 98 84
Penicillium_chrysogenum_v1.0 92 78
Aspergillus_acidus_v1.0 91 81
Aspergillus_fumigatus_Af293 83 71
Aspergillus_brasiliensis_v1.0 93 81
Aspergillus_nidulans_FGSC_A4_ 80 72
Aspergillus_sydowii_v1.0 104 88
Aspergillus_versicolor_v1.0 100 86
Aspergillus_glaucus 94 78
Aspergillus_carbonarius_ITEM_5010_ 80 69
Neosartorya_fischeri_NRRL_181_ 88 74
Aspergillus_terreus_NIH2624_ 73 60
Aspergillus_tubingensis_v1.0 87 76
Aspergillus_wentii_v1.0 99 84
Aspergillus_oryzae_RIB40_ 71 62
Aspergillus_niger_22 82 72
Aspergillus_niger_ATCC_1015_ 53 49
Aspergillus_flavus_NRRL3357_ 66 59
Aspergillus_clavatus_NRRL_1_ 84 73
Penicillium_marneffei_ATCC_18224_ 97 79
Tuber_melanosporum_Mel28_22 77 67
Tuber_melanosporum_Vittad_   (Perigord truffle)   82 70
Hansenula_polymorpha_v2.0 48 44
Dekkera_bruxellensis_CBS_2499_v2.0 49 48
Pichia_membranifaciensv1.0 50 47
Candida_tanzawaensis_NRRL_Y-17324__v1.0 54 51
Candida_dubliniensis_CD36_ 50 46
Candida_tropicalis_MYA-3404_ 54 50
Candida_parapsilosis_ 51 47
Candida_albicans_SC5314 50 46
Lodderomyces_elongisporus_NRRL_YB-4239_ 52 49
Babjeviella_inositovora_NRRL_Y-12698_v1.0 61 53
Pichia_stipitis_CBS_6054_ 51 48
Candida_guilliermondii_ATCC_6260_ 55 51
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 52 49
Debaromyces_hansenii 52 48
Wickerhamomyces_anomalus 63 59
Pichia_pastoris_GS115_ 56 52
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 39 38
Yarrowia_lipolytica_CLIB122 66 60
Candida_lusitaniae_ATCC_42720_ 55 50
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 50 45
Vanderwaltozyma_polyspora_DSM_70294_ 47 44
Candida_glabrata_CBS138 50 46
Kluyveromyces_thermotolerans_CBS_6340 54 50
Lachancea_kluyveri_ 55 51
Kluyveromyces_waltii 48 45
Ashbya_gossypii_ATCC_10895_ 46 43
Zygosaccharomyces_rouxii_ 52 48
Saccharomyces_mikatae_MIT 46 43
Saccharomyces_paradoxus_MIT 51 47
Saccharomyces_cerevisiae_76   (Baker's yeast)   53 50
Saccharomyces_bayanus_MIT 49 46
Kluyveromyces_lactis 47 45
Schizosaccharomyces_cryophilus_OY26_22 68 59
Schizosaccharomyces_octosporus_yFS286_ 67 59
Schizosaccharomyces_japonicus_yFS275_ 61 55
Schizosaccharomyces_pombe   (Fission yeast)   68 59
Catenaria_anguillulae_PL171_v1.0 113 95
Allomyces_macrogynus_ATCC_38327_ 203 173
Spizellomyces_punctatus_DAOM_BR117_ 97 88
Dictyostelium_discoideum 195 165
Dictyostelium_purpureum_ 278 252
Entamoeba_dispar_1.2 96 76
Entamoeba_invadens_1.2 107 75
Entamoeba_histolytica_1 99 75
Selaginella_moellendorffii_ 563 512
Pinus_taeda   (Loblolly pine)   528 448
Picea_abies   (Norway spruce)   366 343
Eucalyptus_grandis_v201   (Rose gum)   795 721
Theobroma_cacao_B97-61/B2_v1   (Cacao)   534 486
Gossypium_raimondii_v221 1648 1543
Citrus_clementina_v165 743 657
Citrus_sinensis_v154   (Sweet orange)   916 841
Thellungiella_halophila_v173 623 567
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   937 843
Capsella_rubella_v183 710 616
Arabidopsis_lyrata_   (Lyrate rockcress)   719 630
Arabidopsis_thaliana_10   (Thale cress)   863 771
Carica_papaya_   (Papaya)   398 367
Medicago_truncatula_   (Barrel medic)   1014 921
Phaseolus_vulgaris_v186   (French bean)   701 665
Glycine_max_v109   (Soybean)   1194 1130
Cucumis_sativus_v122   (Cucumber)   630 594
Fragaria_vesca_   (Wild strawberry)   618 548
Malus_domestica_v196   (Apple)   963 888
Prunus_persica_v139   (Peach)   539 493
Linum_usitatissimum_v200   (Flax)   786 732
Manihot_esculenta_v147   (Cassava)   743 688
Populus_trichocarpa_v156   (Black cottonwood)   867 802
Vitis_vinifera_   (Wine grape)   402 371
Mimulus_guttatus_v140   (Spotted monkey flower)   693 620
Solanum_lycopersicum_v.2.3   (Tomato)   593 550
Solanum_tuberosum_   (Potato)   830 770
Actinidia_chinensis_Hongyang_ 558 520
Aquilegia_coerulea_v195 818 719
Triticum_urartu_22 400 345
Triticum_aestivum_22   (Bread wheat)   1306 1135
Aegilops_tauschii_22 472 403
Brachypodium_distachyon_   (Stiff brome)   694 642
Oryza_barthii_22   (African wild rice)   734 593
Oryza_meridionalis_22 760 642
Oryza_glumaepatula_22 863 736
Oryza_glaberrima   (African rice)   556 493
Oryza_punctata_22 815 718
Oryza_nivara_22 889 764
Oryza_brachyantha_22   (Malo sina)   502 444
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   880 793
Oryza_sativa_v193   (Rice)   872 785
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   579 531
Panicum_virgatum_v202   (Switchgrass)   1218 1075
Setaria_italica_v164   (Foxtail millet)   753 684
Zea_mays_subsp._mays_   (Maize)   1030 970
Zea_mays_v181   (Maize)   1104 1040
Sorghum_bicolor_   (Sorghum)   629 567
Musa_balbisiana   (Balbis banana)   622 592
Musa_acuminata_22   (Wild Malaysian banana)   701 660
Amborella_trichopoda_22 343 319
Physcomitrella_patens 352 312
Coccomyxa_subellipsoidea_sp._C-169_v2 117 102
Asterochloris_sp._Cgr/DA1pho_v1.0 88 81
Chlorella_variabilis_sp._NC64A_ 141 127
Chlorella_vulgaris_ 92 83
Volvox_carteri_f._nagariensis_ 138 124
Volvox_carteri_v199 135 122
Chlamydomonas_reinhardtii_4.0 143 133
Ostreococcus_sp._RCC809_ 88 83
Ostreococcus_lucimarinus_CCE9901_ 88 81
Ostreococcus_tauri_ 71 67
Bathycoccus_prasinos_ 84 78
Micromonas_sp._RCC299_ 127 117
Micromonas_pusilla_CCMP1545_v3.0 123 113
Cyanidioschyzon_merolae_strain_10D_22 54 50
Cyanidioschyzon_merolae 54 50
Porphyridium_purpureum_02_2012 84 83
Thecamonas_trahens_ATCC_50062_ 176 146
Bigelowiella_natans_CCMP2755_22 226 191
Giardia_lamblia_2.3 73 67
Cyanophora_paradoxa_ 192 186
Leishmania_mexicana_2.4 77 74
Leishmania_major_strain_Friedlin_ 80 78
Leishmania_infantum_JPCM5_2.4 77 74
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 76 73
Trypanosoma_vivax_ 65 59
Trypanosoma_cruzi_strain_CL_Brener 64 60
Trypanosoma_congolense_2.4 88 81
Trypanosoma_brucei_gambiense_v4.1 75 69
Trypanosoma_brucei_TREU927_v4.1 74 69
Ectocarpus_siliculosus 165 159
Aureococcus_anophagefferens_ 149 131
Albugo_laibachii_22 118 114
Pythium_iwayamai_DAOM_BR242034_22 164 148
Pythium_arrhenomanes_ATCC_12531_22 167 146
Pythium_ultimum_v1.7-2 162 150
Pythium_aphanidermatum_DAOM_BR444_22 154 136
Pythium_irregulare_DAOM_BR486_22 171 157
Pythium_vexans_DAOM_BR484_22 170 148
Phytophthora_ramorum_1.1   (Sudden oak death agent)   149 137
Phytophthora_sojae_1.1 168 158
Phytophthora_infestans_T30-4_ 163 150
Phytophthora_capsici_ 116 112
Hyaloperonospora_arabidopsidis_22 115 107
Phaeodactylum_tricornutumCCAP_1055/1 92 89
Fragilariopsis_cylindrus 242 222
Thalassiosira_pseudonana_CCMP1335 101 95
Perkinsus_marinus_ATCC_50983_ 248 229
Paramecium_tetraurelia_ 880 746
Tetrahymena_thermophila_SB210_1_ 402 322
Ichthyophthirius_multifiliis_strain_G5_ 77 65
Cryptosporidium_hominis 45 45
Cryptosporidium_muris 58 56
Cryptosporidium_parvum_Iowa_II 48 48
Neospora_caninum 70 67
Toxoplasma_gondii_VEG 70 67
Toxoplasma_gondii_ME49 76 73
Toxoplasma_gondii_GT1 65 62
Babesia_bovis_T2Bo_ 78 78
Theileria_parva__ 39 39
Theileria_annulata 41 41
Plasmodium_falciparum_3D7_ 52 50
Plasmodium_vivax_SaI-1_7.0 50 48
Plasmodium_knowlesi_strain_H_ 52 50
Plasmodium_yoelii_ssp._yoelii_1_ 43 41
Plasmodium_chabaudi_ 49 47
Plasmodium_berghei_ANKA_ 52 49
Symbiodinium_minutum_clade_B1_v1.2 510 467
Naegleria_gruberi_ 128 109
Trichomonas_vaginalis_ 179 162
Guillardia_theta_CCMP2712_v1.0_ 253 235
Emiliania_huxleyi_CCMP1516_ 763 735
Pseudanabaena_sp._PCC_7367 1 1
Halothece_sp._PCC_7418 1 1
Gloeobacter_violaceus_PCC_7421 2 2
Candidatus_Phytoplasma_mali 1 1
Conexibacter_woesei_DSM_14684 1 1
Thermobispora_bispora_DSM_43833 1 1
Nakamurella_multipartita_DSM_44233 2 2
Modestobacter_marinus 2 2
Geodermatophilus_obscurus_DSM_43160 1 1
Kineococcus_radiotolerans_SRS30216 4 4
Catenulispora_acidiphila_DSM_44928 2 2
Frankia_sp._EAN1pec 1 1
Frankia_alni_ACN14a 2 2
Thermomonospora_curvata_DSM_43183 1 1
Streptosporangium_roseum_DSM_43021 2 2
Kitasatospora_setae_KM-6054 1 1
Streptomyces_coelicolor_A3(2) 3 3
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 3 3
Streptomyces_bingchenggensis_BCW-1 4 4
Streptomyces_violaceusniger_Tu_4113 3 3
Streptomyces_avermitilis_MA-4680 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 3 3
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 4 4
Pseudonocardia_dioxanivorans_CB1190 3 3
Saccharopolyspora_erythraea_NRRL_2338 1 1
Amycolatopsis_mediterranei_U32 2 2
Kribbella_flavida_DSM_17836 2 2
Nocardioides_sp._JS614 2 2
Verrucosispora_maris_AB-18-032 1 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._N902-109 2 2
Actinoplanes_sp._SE50/110 2 2
Actinoplanes_missouriensis_431 2 2
Tsukamurella_paurometabola_DSM_20162 2 2
Gordonia_sp._KTR9 1 1
Gordonia_polyisoprenivorans_VH2 1 1
Gordonia_bronchialis_DSM_43247 2 2
Rhodococcus_jostii_RHA1 3 3
Rhodococcus_equi_103S 2 2
Rhodococcus_opacus_B4 2 2
Rhodococcus_erythropolis_PR4 2 2
Nocardia_cyriacigeorgica_GUH-2 1 1
Nocardia_farcinica_IFM_10152 1 1
Mycobacterium_sp._JLS 2 2
Mycobacterium_vanbaalenii_PYR-1 1 1
Mycobacterium_rhodesiae_NBB3 2 2
Mycobacterium_chubuense_NBB4 1 1
Mycobacterium_smegmatis_str._MC2_155 2 2
Beutenbergia_cavernae_DSM_12333 1 1
Microbacterium_testaceum_StLB037 1 1
Intrasporangium_calvum_DSM_43043 1 1
Cellulomonas_flavigena_DSM_20109 1 1
Cellulomonas_fimi_ATCC_484 1 1
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_chlorophenolicus_A6 1 1
Arthrobacter_aurescens_TC1 1 1
Arthrobacter_sp._FB24 1 1
Renibacterium_salmoninarum_ATCC_33209 2 2
Micrococcus_luteus_NCTC_2665 1 1
Anaerolinea_thermophila_UNI-1 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_maricopensis_DSM_21211 1 1
Desulfotomaculum_kuznetsovii_DSM_6115 1 1
Desulfotomaculum_ruminis_DSM_2154 1 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1 1
Thermoanaerobacter_sp._X514 1 1
Thermoanaerobacter_wiegelii_Rt8.B1 1 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1 1
Haliscomenobacter_hydrossis_DSM_1100 1 1
Chitinophaga_pinensis_DSM_2588 1 1
Candidatus_Amoebophilus_asiaticus_5a2 10 10
Candidatus_Cardinium_hertigii 1 1
Fibrella_aestuarina 1 1
Dyadobacter_fermentans_DSM_18053 1 1
Spirosoma_linguale_DSM_74 1 1
Cellulophaga_algicola_DSM_14237 1 1
Candidatus_Protochlamydia_amoebophila_UWE25 2 2
Parachlamydia_acanthamoebae_UV-7 3 3
Simkania_negevensis_Z 2 2
Phycisphaera_mikurensis_NBRC_102666 1 1
Spirochaeta_smaragdinae_DSM_11293 1 1
Spirochaeta_caldaria_DSM_7334 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Granulicella_tundricola_MP5ACTX9 1 1
Granulicella_mallensis_MP5ACTX8 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Terriglobus_saanensis_SP1PR4 1 1
Terriglobus_roseus_DSM_18391 1 1
Acidobacterium_capsulatum_ATCC_51196 1 1
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfatibacillum_alkenivorans_AK-01 1 1
Babela_massiliensis 1 1
Haliangium_ochraceum_DSM_14365 1 1
Anaeromyxobacter_sp._Fw109-5 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 2 2
Myxococcus_fulvus_HW-1 2 2
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_phymatum_STM815 1 1
Cupriavidus_metallidurans_CH34 1 1
Variovorax_paradoxus_S110 1 1
Caulobacter_sp._K31 1 1
Caulobacter_segnis_ATCC_21756 1 1
Sphingobium_sp._SYK-6 1 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1 1
Agrobacterium_sp._H13-3 1 1
Mesorhizobium_opportunistum_WSM2075 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Mesorhizobium_loti_MAFF303099 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Coxiella_burnetii_Dugway_5J108-111 1 1
Legionella_longbeachae_NSW150 1 1
Legionella_pneumophila_str._Corby 1 1
Candidatus_Caldiarchaeum_subterraneum 3 3
Candidatus_Nitrosopumilus_sp._AR2 1 1
Nitrosopumilus_maritimus_SCM1 2 2
Vulcanisaeta_moutnovskia_768-28 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanothermococcus_okinawensis_IH1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   732 633
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   278 254
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   171 151
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   149 122
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   260 223
Cryptococcus_neoformans_var._grubii_H99_ 63 53
Cryptococcus_neoformans_B-3501A_ 70 59
Cryptococcus_neoformans_JEC21_ 61 53
Paracoccidioides_brasiliensis_Pb01_ 69 58
Paracoccidioides_brasiliensis_Pb03_ 71 59
Coccidioides_posadasii_str._Silveira_ 88 77
Coccidioides_immitis_RMSCC_3703_ 68 59
Coccidioides_immitis_RMSCC_2394_ 85 74
Coccidioides_immitis_H538.4_ 74 67
Ajellomyces_dermatitidis_ER-3_ 89 76
Histoplasma_capsulatum_H143 62 58
Histoplasma_capsulatum_H88 80 70
Histoplasma_capsulatum_G186AR 77 67
Aspergillus_fumigatus_A1163_ 84 72
Candida_albicans_WO-1_ 48 44
Saccharomyces_cerevisiae_UC5 42 39
Saccharomyces_cerevisiae_PW5 44 41
Saccharomyces_cerevisiae_FL100 26 25
Saccharomyces_cerevisiae_CLIB382 2 2
Saccharomyces_cerevisiae_CLIB324 24 22
Saccharomyces_cerevisiae_CBS7960 36 34
Saccharomyces_cerevisiae_YJM269 37 35
Saccharomyces_cerevisiae_T7 52 49
Saccharomyces_cerevisiae_FostersB 29 29
Saccharomyces_cerevisiae_FostersO 41 38
Saccharomyces_cerevisiae_VL3 39 36
Saccharomyces_cerevisiae_Vin13 37 35
Saccharomyces_cerevisiae_LalvinQA23 43 41
Saccharomyces_cerevisiae_AWRI796 38 37
Saccharomyces_cerevisiae_Sigma1278b 52 49
Saccharomyces_cerevisiae_W303 52 49
Saccharomyces_cerevisiae_JAY291 52 49
Saccharomyces_cerevisiae_AWRI1631 38 35
Saccharomyces_cerevisiae_YPS163 19 19
Saccharomyces_cerevisiae_M22 14 14
Saccharomyces_cerevisiae_T73 22 20
Saccharomyces_cerevisiae_CLIB215 36 35
Saccharomyces_cerevisiae_Y10 17 16
Saccharomyces_cerevisiae_YJM789_ 53 50
Saccharomyces_cerevisiae_YJM789 53 50
Saccharomyces_cerevisiae_RM11-1a 53 50
Saccharomyces_cerevisiae_RM11-1a_ 53 50
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   53 50
Schizosaccharomyces_pombe_972h-_ 68 59
Batrachochytrium_dendrobatidis_JEL423_ 79 73
Batrachochytrium_dendrobatidis_JAM81_ 87 80
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   499 459
Hordeum_vulgare_22   (Domesticated barley)   977 863
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   616 557
Trypanosoma_brucei_Lister_427_v4.1 75 69
Neospora_caninum_Nc-Liverpool_6.2 70 67
Plasmodium_falciparum_HB3_ 47 45
Plasmodium_falciparum_Dd2_ 34 32
Dactylococcopsis_salina_PCC_8305 2 2
Prochlorococcus_marinus_str._MIT_9215 1 1
Oscillatoria_nigro-viridis_PCC_7112 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Frankia_sp._EuI1c 2 2
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_albus_J1074 2 2
Streptomyces_rapamycinicus_NRRL_5491 2 2
Streptomyces_davawensis_JCM_4913 1 1
Streptomyces_fulvissimus_DSM_40593 2 2
Streptomyces_venezuelae_ATCC_10712 2 2
Streptomyces_collinus_Tu_365 3 3
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 4 4
Saccharothrix_espanaensis_DSM_44229 1 1
Amycolatopsis_mediterranei_RB 2 2
Amycolatopsis_mediterranei_S699 2 2
Amycolatopsis_mediterranei_S699 2 2
Amycolatopsis_orientalis_HCCB10007 1 1
Actinoplanes_friuliensis_DSM_7358 3 3
Rhodococcus_erythropolis_CCM2595 3 3
Nocardia_brasiliensis_ATCC_700358 2 2
Mycobacterium_abscessus_subsp._bolletii_50594 1 1
Mycobacterium_sp._KMS 2 2
Mycobacterium_sp._MCS 2 2
Mycobacterium_smegmatis_str._MC2_155 2 2
Ruminococcus_champanellensis_18P13 1 1
Thermoanaerobacter_sp._X513 1 1
Singulisphaera_acidiphila_DSM_18658 2 2
Anaeromyxobacter_sp._K 1 1
Anaeromyxobacter_dehalogenans_2CP-C 1 1
Myxococcus_stipitatus_DSM_14675 2 2
Burkholderia_lata 1 1
Burkholderia_cenocepacia_MC0-3 1 1
Variovorax_paradoxus_B4 1 1
Variovorax_paradoxus_EPS 1 1
Mesorhizobium_australicum_WSM2073 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_HaA2 1 1
Rhodopseudomonas_palustris_CGA009 1 1
Bradyrhizobium_japonicum_USDA_6 1 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Coxiella_burnetii_CbuG_Q212 1 1
Legionella_pneumophila_str._Paris 3 2
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila_LPE509 3 2
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 3 2
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 3 2
Legionella_pneumophila_subsp._pneumophila 3 2
Legionella_pneumophila_subsp._pneumophila 3 2
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 3 2
Legionella_pneumophila_2300/99_Alcoy 1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1 1
Methanolobus_psychrophilus_R15 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   462 420
Pan_troglodytes_69_2.1.4   (Chimpanzee)   340 306
Gorilla_gorilla_69_3.1   (Western gorilla)   350 321
Pongo_abelii_69_2   (Sumatran orangutan)   339 307
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   333 297
Macaca_mulatta_69_1   (Rhesus monkey)   348 314
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   368 331
Otolemur_garnettii_69_3   (Small-eared galago)   356 321
Microcebus_murinus_69_1   (Gray mouse lemur)   229 213
Rattus_norvegicus_69_3.4   (Norway rat)   320 286
Mus_musculus_69_38   (House mouse)   360 324
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   232 214
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   314 289
Cavia_porcellus_69_3   (Domestic guinea pig)   315 283
Oryctolagus_cuniculus_69_2   (Rabbit)   328 296
Ochotona_princeps_69   (American pika)   258 237
Tupaia_belangeri_69   (Northern tree shrew)   206 189
Sus_scrofa_69_10.2   (Pig)   337 301
Bos_taurus_69_3.1   (Cattle)   343 307
Vicugna_pacos_69_1   (Alpaca)   185 165
Tursiops_truncatus_69_1   (Bottlenose dolphin)   297 266
Mustela_putorius_furo_69_1.0   (Domestic ferret)   322 289
Ailuropoda_melanoleuca_69_1   (Giant panda)   332 296
Canis_familiaris_69_3.1   (Dog)   335 298
Felis_catus_69   (Domestic cat)   217 194
Equus_caballus_69_2   (Horse)   319 284
Myotis_lucifugus_69_2.0   (Little brown bat)   349 315
Pteropus_vampyrus_69_1   (Large flying fox)   299 265
Sorex_araneus_69_1   (European shrew)   213 190
Erinaceus_europaeus_69   (Western European hedgehog)   214 202
Procavia_capensis_69_1   (Cape rock hyrax)   241 216
Loxodonta_africana_69_3   (African savanna elephant)   353 322
Echinops_telfairi_69   (Small Madagascar hedgehog)   228 208
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   209 188
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   202 184
Macropus_eugenii_69_1.0   (Tammar wallaby)   216 200
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   332 299
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   376 341
Ornithorhynchus_anatinus_69_5   (Platypus)   234 217
Petromyzon_marinus_69_7.0   (Sea lamprey)   159 145
Meleagris_gallopavo_69_2   (Turkey)   236 212
Gallus_gallus_69_2   (Chicken)   261 234
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   247 220
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   338 313
Anolis_carolinensis_69_2.0   (Green anole)   312 279
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   396 353
Latimeria_chalumnae_69_1   (Coelacanth)   399 366
Gadus_morhua_69_1   (Atlantic cod)   379 341
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   351 311
Takifugu_rubripes_69_4   (Torafugu)   360 316
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   433 391
Oryzias_latipes_69_1   (Japanese medaka)   389 337
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   387 340
Oreochromis_niloticus_69_1.0   (Nile tilapia)   522 475
Danio_rerio_69_9   (Zebrafish)   533 483
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   114 102
Ciona_intestinalis_69   (Vase tunicate)   148 129
Drosophila_melanogaster_69_5   (Fruit fly)   168 153
Caenorhabditis_elegans_69_215   (Roundworm)   218 194
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   53 50
Arabidopsis_thaliana_10   (Thale cress)   660 581

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1475 1373
Homo_sapiens__(NCBI_version)   (Human)   647 583
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   361 322
Heliconius_numata__(Incomplete) 38 35
Loa_loa_v3.3_(Request)   (Eye worm)   143 127
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   121 107
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   109 94
Moniliophthora_perniciosa_FA553__(Genome_survey) 27 26
Encephalitozoon_intestinalis__(endoparasite) 24 24
Encephalitozoon_cuniculi_(endoparasite) 25 25
Picea_sitchensis__(Incomplete)   (Sitka spruce)   49 47
Lotus_japonicus__(Early_assembly) 429 400
Malus_x_domestica_(Duplicate)   (Apple)   963 888
Ricinus_communis__(Early_assembly)   (Castor bean)   447 414
Nicotiana_benthamiana_0.4.4_(Early_draft) 915 849
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   575 535
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   593 550
Phoenix_dactylifera__(Early_draft)   (Date palm)   209 196
Guillardia_theta_(nucleomorph) 3 3
NCBI_plasmid_sequences_(Plasmids) 4 4
NCBI_viral_sequences_(Viral) 510 507
NCBI_2017_08_genome 319979 287388
PDB_chains_(SCOP_1.75)_(PDB) 32 32
Protein_Data_Bank_(all_PDB_sequenc) 626 573
Core_Eukaryotic_Genes_458_(CEGMA) 12 12
UniProt__viral_sequences_(Viral) 500 498
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 692 692
Protozoadb_2010_08_(Protozoadb) 2385 2206
STRING_v9.0.5_(STRING) 24646 21986
TargetDB__(Targets) 806 721
Uniprot_2018_03_genome 298266 266696

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