SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Cysteine-rich domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Cysteine-rich domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   312 255
Pan_troglodytes_76_2.1.4   (Chimpanzee)   65 50
Gorilla_gorilla_76_3.1   (Western gorilla)   90 73
Pongo_abelii_76_2   (Sumatran orangutan)   77 60
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   77 61
Papio_anubis_76   (Olive baboon)   89 68
Macaca_mulatta_76_1   (Rhesus monkey)   126 101
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   182 141
Otolemur_garnettii_76_3   (Small-eared galago)   79 60
Microcebus_murinus_76_1   (Gray mouse lemur)   56 45
Rattus_norvegicus_76_5.0   (Norway rat)   90 70
Mus_musculus_76_38   (House mouse)   216 176
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   60 47
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   74 58
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   92 77
Cavia_porcellus_76_3   (Domestic guinea pig)   103 83
Oryctolagus_cuniculus_76_2   (Rabbit)   70 53
Ochotona_princeps_76   (American pika)   60 48
Tupaia_belangeri_76   (Northern tree shrew)   50 42
Sus_scrofa_76_10.2   (Pig)   73 60
Bos_taurus_76_3.1   (Cattle)   79 60
Ovis_aries_76_3.1   (Sheep)   87 67
Vicugna_pacos_76_1   (Alpaca)   39 30
Tursiops_truncatus_76_1   (Bottlenose dolphin)   67 52
Mustela_putorius_furo_76_1.0   (Domestic ferret)   74 58
Ailuropoda_melanoleuca_76_1   (Giant panda)   84 65
Canis_familiaris_76_3.1   (Dog)   105 81
Felis_catus_76_6.2   (Domestic cat)   73 56
Equus_caballus_76_2   (Horse)   91 72
Myotis_lucifugus_76_2.0   (Little brown bat)   62 50
Pteropus_vampyrus_76_1   (Large flying fox)   63 52
Sorex_araneus_76_1   (European shrew)   48 41
Erinaceus_europaeus_76   (Western European hedgehog)   48 38
Procavia_capensis_76_1   (Cape rock hyrax)   62 51
Loxodonta_africana_76_3   (African savanna elephant)   115 92
Echinops_telfairi_76   (Small Madagascar hedgehog)   53 45
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   100 74
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   38 29
Macropus_eugenii_76_1.0   (Tammar wallaby)   60 49
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   77 65
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   70 58
Ornithorhynchus_anatinus_76_5   (Platypus)   63 53
Saccoglossus_kowalevskii_v3.0 97 82
Petromyzon_marinus_76_7.0   (Sea lamprey)   34 28
Meleagris_gallopavo_76_2   (Turkey)   63 46
Gallus_gallus_76_4   (Chicken)   67 51
Anas_platyrhynchos_76_1.0   (Mallard)   58 46
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   65 49
Ficedula_albicollis_76_1.0   (Collared flycatcher)   63 49
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   79 62
Anolis_carolinensis_76_2.0   (Green anole)   72 55
Xenopus_laevis_   (African clawed frog)   103 86
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   83 67
Latimeria_chalumnae_76_1   (Coelacanth)   82 66
Lepisosteus_oculatus_76   (Spotted gar)   96 78
Gadus_morhua_76_1   (Atlantic cod)   96 75
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   116 94
Takifugu_rubripes_76_4   (Torafugu)   340 265
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   115 86
Oryzias_latipes_76_1   (Japanese medaka)   107 84
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   98 76
Poecilia_formosa_76   (Amazon molly)   106 84
Oreochromis_niloticus_76_1.0   (Nile tilapia)   142 111
Astyanax_mexicanus_76   (Mexican tetra)   100 79
Danio_rerio_76_9   (Zebrafish)   157 126
Oikopleura_dioica 28 21
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   96 66
Ciona_intestinalis_76   (Vase tunicate)   21 17
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   38 30
Adineta_vaga 105 73
Octopus_bimaculoides_280 74 64
Crassostrea_gigas_22   (Pacific oyster)   33 26
Lottia_gigantea_   (Owl limpet)   31 23
Helobdella_robusta_ 39 29
Capitella_sp._I_ 34 26
Danaus_plexippus_OGS1.0   (Monarch butterfly)   34 26
Heliconius_melpomene_   (Postman butterfly)   20 17
Bombyx_mori_   (Domestic silkworm)   24 20
Nasonia_vitripennis_   (Jewel wasp)   28 20
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   46 33
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   34 26
Linepithema_humile_v1.1   (Argentine ant)   35 29
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   34 29
Solenopsis_invicta_v.2.2.3   (Red fire ant)   23 20
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   33 25
Atta_cephalotes_v1.1 31 25
Camponotus_floridanus_v3.3   (Florida carpenter ant)   36 29
Lucilia_cuprina   (Australian sheep blowfly)   30 22
Drosophila_grimshawi_1.3 34 25
Drosophila_willistoni_1.3 31 22
Drosophila_pseudoobscura_2.13 34 25
Drosophila_persimilis_1.3 29 21
Drosophila_suzukii 29 23
Drosophila_yakuba_1.3 35 26
Drosophila_simulans_1.3 29 22
Drosophila_sechellia_1.3 28 22
Drosophila_melanogaster_76_5   (Fruit fly)   134 95
Drosophila_erecta_1.3 32 24
Drosophila_ananassae_1.3 33 25
Drosophila_virilis_1.2 32 24
Drosophila_mojavensis_1.3 32 24
Megaselia_scalaris_22 10 9
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   33 27
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   38 32
Anopheles_darlingi_22   (American malaria mosquito)   21 19
Anopheles_gambiae_49_3j   (African malaria mosquito)   30 23
Tribolium_castaneum_3.0   (Red flour beetle)   43 34
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   36 29
Acyrthosiphon_pisum_   (Pea aphid)   28 21
Rhodnius_prolixus_22 29 22
Daphnia_pulex_   (Common water flea)   48 40
Strigamia_maritima_22 35 29
Sarcoptes_scabiei 27 21
Tetranychus_urticae_   (Two-spotted spider mite)   36 25
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   28 21
Pristionchus_pacificus_ 26 21
Meloidogyne_incognita_   (Southern root-knot nematode)   30 21
Meloidogyne_hapla_ 20 15
Onchocerca_volvulus_22 35 28
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   46 37
Caenorhabditis_japonica_ 38 30
Caenorhabditis_brenneri_ 51 38
Caenorhabditis_remanei_ 53 38
Caenorhabditis_elegans_76_235   (Roundworm)   113 80
Caenorhabditis_briggsae_2 42 30
Trichinella_spiralis_22 32 27
Hymenolepis_microstoma_ 25 18
Echinococcus_multilocularis_ 23 19
Echinococcus_granulosus_ 23 19
Taenia_solium_   (Pork tapeworm)   26 18
Schistosoma_mansoni_ 29 22
Mnemiopsis_leidyi   (Sea walnut)   24 21
Thelohanellus_kitauei 8 8
Acropora_digitifera_v1.0 26 22
Nematostella_vectensis_1.0   (Starlet sea anemone)   38 30
Hydra_vulgaris 36 27
Amphimedon_queenslandica 50 34
Trichoplax_adhaerens_ 25 19
Proterospongia_sp._ATCC_50818_ 21 17
Monosiga_brevicollis_ 15 11
Sphaeroforma_arctica_JP610_ 26 20
Capsaspora_owczarzaki_ATCC_30864_ 46 37
Conidiobolus_coronatus_NRRL28638_v1.0 11 8
Mortierella_verticillata_NRRL_6337_ 17 13
Phycomyces_blakesleeanus_ 15 12
Rhizopus_oryzae_RA_99-880_ 18 14
Mucor_circinelloides_ 11 8
Rhizomucor_miehei_CAU432_ 15 12
Malassezia_globosa_CBS_7966_ 6 4
Sporisorium_reilianum_22 7 6
Ustilago_maydis_ 5 5
Mixia_osmundae_IAM_14324_v1.0 6 5
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 6 5
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 6 5
Melampsora_laricis-populina_ 5 4
Rhodotorula_graminis_WP1_v1.0 4 3
Sporobolomyces_roseus_IAM_13481_ 3 2
Microbotryum_violaceum_22 8 7
Wallemia_sebi_v1.0 3 2
Sphaerobolus_stellatus_v1.0 7 6
Piloderma_croceum_F_1598_v1.0 7 6
Serpula_lacrymans_var._lacrymans_S7.9_ 5 4
Coniophora_puteana 7 6
Hydnomerulius_pinastri_v2.0 8 7
Paxillus_rubicundulus_Ve08.2h10_v1.0 7 5
Pisolithus_microcarpus_441_v1.0 6 5
Pisolithus_tinctorius_Marx_270_v1.0 6 5
Scleroderma_citrinum_Foug_A_v1.0 8 7
Coprinopsis_cinerea_okayama7_130_v3 7 6
Pleurotus_ostreatus_   (Oyster mushroom)   6 5
Amanita_thiersii_Skay4041_v1.0 7 6
Amanita_muscaria_Koide_v1.0   (Fly agaric)   7 6
Galerina_marginata_v1.0 8 7
Hebeloma_cylindrosporum_h7_v2.0 6 5
Laccaria_bicolor_S238N-H82_ 5 4
Agaricus_bisporus_var._bisporus_ 8 6
Schizophyllum_commune_ 5 4
Stereum_hirsutum_FP-91666_SS1__v1.0 7 6
Heterobasidion_annosum_ 7 6
Gloeophyllum_trabeumv1.0 8 7
Punctularia_strigosozonata_v1.0 6 5
Sebacina_vermifera_MAFF_305830_v1.0 7 6
Fomitiporia_mediterranea_v1.0 7 6
Tulasnella_calospora_AL13/4D_v1.0 6 5
Postia_placenta_ 6 5
Wolfiporia_cocos_MD-104_SS10__v1.0 8 7
Fomitopsis_pinicolav1.0 7 6
Fomitopsis_pinicola_FP-58527_SS1_v3.0 8 7
Phanerochaete_chrysosporium_RP-78_2.1 7 6
Dichomitus_squalens 8 7
Trametes_versicolor_v1.0 8 7
Tremella_mesenterica_   (Witches' butter)   5 4
Daldinia_eschscholzii_EC12_v1.0 5 4
Apiospora_montagnei_NRRL_25634_v1.0 5 4
Magnaporthe_poae_ATCC_64411_22 4 3
Magnaporthe_grisea_70-15_ 5 4
Podospora_anserina_ 5 4
Sporotrichum_thermophile_ATCC_42464_ 3 3
Thielavia_terrestris_NRRL_8126_ 3 3
Chaetomium_globosum_CBS_148.51_ 5 4
Neurospora_tetrasperma_ 2 2
Neurospora_discreta_FGSC_8579_ 2 2
Neurospora_crassa_OR74A_ 5 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   3 3
Verticillium_albo-atrum_VaMs.102_ 5 4
Verticillium_dahliae_VdLs.17_ 5 4
Acremonium_alcalophilumv_1.0 5 4
Glomerella_graminicola_22 5 4
Fusarium_graminearum_ 5 4
Nectria_haematococca_mpVI_ 5 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 5 4
Fusarium_verticillioides_7600_ 4 3
Trichoderma_asperellum_CBS_433.97_v1.0 3 3
Trichoderma_atroviride_ 3 3
Trichoderma_citrinoviride_v1.0 3 3
Trichoderma_reesei_1.2 3 3
Trichoderma_virens_Gv29-8_ 3 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 5 4
Trichoderma_harzianum_CBS_226.95_v1.0 3 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   4 3
Botrytis_cinerea_B05.10_ 3 2
Sclerotinia_sclerotiorum_ 4 3
Blumeria_graminis_22 5 4
Didymella_exigua_CBS_183.55_v1.0 5 4
Leptosphaeria_maculans_22 5 4
Setosphaeria_turcica_v1.0 4 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4 4
Cochliobolus_victoriae_FI3_v1.0 4 4
Cochliobolus_carbonum_26-R-13_v1.0 4 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   4 4
Alternaria_brassicicola_ 4 3
Cochliobolus_lunatus_m118_v2.0 6 5
Pyrenophora_teres_f._teres_22 4 3
Pyrenophora_tritici-repentis_ 4 3
Stagonospora_nodorum_ 4 3
Mycosphaerella_graminicola_IPO323_ 6 5
Zasmidium_cellare_ATCC_36951_v1.0 5 4
Dothistroma_septosporum 5 4
Septoria_musiva_v1.0 5 4
Mycosphaerella_fijiensis_CIRAD86_ 5 4
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4 3
Paracoccidioides_brasiliensis_Pb18_ 3 3
Coccidioides_posadasii_RMSCC_3488_ 5 4
Coccidioides_immitis_RS_ 9 6
Ajellomyces_dermatitidis_SLH14081_ 4 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 5 4
Microsporum_canis_CBS_113480_ 5 4
Trichophyton_equinum_CBS_127.97_ 4 3
Trichophyton_verrucosum_HKI_0517_ 5 4
Arthroderma_benhamiae_CBS_112371_ 5 4
Trichophyton_tonsurans_CBS_112818_ 5 4
Trichophyton_rubrum_CBS_118892_ 5 4
Uncinocarpus_reesii_1704_ 4 3
Aspergillus_zonatus_v1.0 5 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 5 4
Penicillium_chrysogenum_v1.0 5 4
Aspergillus_acidus_v1.0 5 4
Aspergillus_fumigatus_Af293 4 3
Aspergillus_brasiliensis_v1.0 5 4
Aspergillus_nidulans_FGSC_A4_ 5 4
Aspergillus_sydowii_v1.0 5 4
Aspergillus_versicolor_v1.0 5 4
Aspergillus_glaucus 5 4
Aspergillus_carbonarius_ITEM_5010_ 5 4
Neosartorya_fischeri_NRRL_181_ 4 3
Aspergillus_terreus_NIH2624_ 4 3
Aspergillus_tubingensis_v1.0 5 4
Aspergillus_wentii_v1.0 5 4
Aspergillus_oryzae_RIB40_ 5 4
Aspergillus_niger_22 5 4
Aspergillus_niger_ATCC_1015_ 2 2
Aspergillus_flavus_NRRL3357_ 4 3
Aspergillus_clavatus_NRRL_1_ 5 4
Penicillium_marneffei_ATCC_18224_ 4 3
Tuber_melanosporum_Mel28_22 5 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   5 4
Hansenula_polymorpha_v2.0 3 2
Dekkera_bruxellensis_CBS_2499_v2.0 3 2
Pichia_membranifaciensv1.0 3 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 2
Candida_dubliniensis_CD36_ 3 2
Candida_tropicalis_MYA-3404_ 3 2
Candida_parapsilosis_ 3 2
Candida_albicans_SC5314 3 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 3 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4 3
Pichia_stipitis_CBS_6054_ 3 2
Candida_guilliermondii_ATCC_6260_ 3 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 2
Debaromyces_hansenii 3 2
Wickerhamomyces_anomalus 3 2
Pichia_pastoris_GS115_ 3 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3 2
Yarrowia_lipolytica_CLIB122 3 2
Candida_lusitaniae_ATCC_42720_ 3 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 2
Vanderwaltozyma_polyspora_DSM_70294_ 3 2
Candida_glabrata_CBS138 3 2
Kluyveromyces_thermotolerans_CBS_6340 3 2
Lachancea_kluyveri_ 3 2
Kluyveromyces_waltii 3 2
Ashbya_gossypii_ATCC_10895_ 3 2
Zygosaccharomyces_rouxii_ 4 3
Saccharomyces_mikatae_MIT 3 2
Saccharomyces_paradoxus_MIT 3 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   3 2
Saccharomyces_bayanus_MIT 3 2
Kluyveromyces_lactis 3 2
Schizosaccharomyces_cryophilus_OY26_22 7 5
Schizosaccharomyces_octosporus_yFS286_ 7 5
Schizosaccharomyces_japonicus_yFS275_ 7 5
Schizosaccharomyces_pombe   (Fission yeast)   7 5
Catenaria_anguillulae_PL171_v1.0 6 5
Allomyces_macrogynus_ATCC_38327_ 20 18
Spizellomyces_punctatus_DAOM_BR117_ 11 8
Dictyostelium_discoideum 11 9
Dictyostelium_purpureum_ 9 6
Entamoeba_dispar_1.2 23 15
Entamoeba_invadens_1.2 24 13
Entamoeba_histolytica_1 23 14
Selaginella_moellendorffii_ 9 9
Pinus_taeda   (Loblolly pine)   20 16
Picea_abies   (Norway spruce)   30 22
Eucalyptus_grandis_v201   (Rose gum)   80 39
Theobroma_cacao_B97-61/B2_v1   (Cacao)   427 103
Gossypium_raimondii_v221 553 146
Citrus_clementina_v165 138 54
Citrus_sinensis_v154   (Sweet orange)   147 70
Thellungiella_halophila_v173 385 102
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   183 65
Capsella_rubella_v183 425 106
Arabidopsis_lyrata_   (Lyrate rockcress)   66 41
Arabidopsis_thaliana_10   (Thale cress)   621 161
Carica_papaya_   (Papaya)   89 32
Medicago_truncatula_   (Barrel medic)   27 25
Phaseolus_vulgaris_v186   (French bean)   22 15
Glycine_max_v109   (Soybean)   33 24
Cucumis_sativus_v122   (Cucumber)   47 26
Fragaria_vesca_   (Wild strawberry)   58 18
Malus_domestica_v196   (Apple)   48 34
Prunus_persica_v139   (Peach)   56 25
Linum_usitatissimum_v200   (Flax)   19 14
Manihot_esculenta_v147   (Cassava)   28 25
Populus_trichocarpa_v156   (Black cottonwood)   132 54
Vitis_vinifera_   (Wine grape)   12 10
Mimulus_guttatus_v140   (Spotted monkey flower)   93 58
Solanum_lycopersicum_v.2.3   (Tomato)   47 27
Solanum_tuberosum_   (Potato)   62 40
Actinidia_chinensis_Hongyang_ 128 58
Aquilegia_coerulea_v195 31 27
Triticum_urartu_22 20 14
Triticum_aestivum_22   (Bread wheat)   29 23
Aegilops_tauschii_22 17 12
Brachypodium_distachyon_   (Stiff brome)   17 13
Oryza_barthii_22   (African wild rice)   36 26
Oryza_meridionalis_22 35 27
Oryza_glumaepatula_22 37 26
Oryza_glaberrima   (African rice)   25 17
Oryza_punctata_22 35 24
Oryza_nivara_22 45 28
Oryza_brachyantha_22   (Malo sina)   19 16
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   46 35
Oryza_sativa_v193   (Rice)   45 35
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   18 15
Panicum_virgatum_v202   (Switchgrass)   60 43
Setaria_italica_v164   (Foxtail millet)   30 19
Zea_mays_subsp._mays_   (Maize)   23 15
Zea_mays_v181   (Maize)   24 16
Sorghum_bicolor_   (Sorghum)   22 16
Musa_balbisiana   (Balbis banana)   17 14
Musa_acuminata_22   (Wild Malaysian banana)   12 9
Amborella_trichopoda_22 20 17
Physcomitrella_patens 12 5
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 2 2
Volvox_carteri_v199 2 2
Chlamydomonas_reinhardtii_4.0 1 1
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 8 5
Bigelowiella_natans_CCMP2755_22 2 2
Cyanophora_paradoxa_ 1 1
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 8 7
Aureococcus_anophagefferens_ 2 2
Albugo_laibachii_22 9 9
Pythium_iwayamai_DAOM_BR242034_22 3 2
Pythium_arrhenomanes_ATCC_12531_22 5 4
Pythium_ultimum_v1.7-2 4 3
Pythium_aphanidermatum_DAOM_BR444_22 4 3
Pythium_irregulare_DAOM_BR486_22 5 4
Pythium_vexans_DAOM_BR484_22 5 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5 4
Phytophthora_sojae_1.1 5 4
Phytophthora_infestans_T30-4_ 5 4
Phytophthora_capsici_ 3 2
Hyaloperonospora_arabidopsidis_22 5 5
Phaeodactylum_tricornutumCCAP_1055/1 3 3
Fragilariopsis_cylindrus 3 3
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 7 7
Paramecium_tetraurelia_ 11 10
Tetrahymena_thermophila_SB210_1_ 11 9
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 2 2
Neospora_caninum 3 2
Toxoplasma_gondii_VEG 3 2
Toxoplasma_gondii_ME49 3 2
Toxoplasma_gondii_GT1 3 2
Theileria_parva__ 3 3
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 3 2
Plasmodium_vivax_SaI-1_7.0 3 2
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 3 2
Plasmodium_berghei_ANKA_ 3 2
Symbiodinium_minutum_clade_B1_v1.2 7 7
Naegleria_gruberi_ 1 1
Trichomonas_vaginalis_ 3 3
Guillardia_theta_CCMP2712_v1.0_ 2 2
Emiliania_huxleyi_CCMP1516_ 4 4
Clostridium_thermocellum_ATCC_27405 1 1
Providencia_stuartii_MRSN_2154 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Halopiger_xanaduensis_SH-6 1 1
Halogeometricum_borinquense_DSM_11551 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   117 92
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   95 69
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   36 27
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   34 25
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   85 59
Cryptococcus_neoformans_var._grubii_H99_ 5 3
Cryptococcus_neoformans_B-3501A_ 5 4
Cryptococcus_neoformans_JEC21_ 7 5
Paracoccidioides_brasiliensis_Pb01_ 2 2
Paracoccidioides_brasiliensis_Pb03_ 4 3
Coccidioides_posadasii_str._Silveira_ 5 4
Coccidioides_immitis_RMSCC_3703_ 5 4
Coccidioides_immitis_RMSCC_2394_ 5 4
Coccidioides_immitis_H538.4_ 3 3
Ajellomyces_dermatitidis_ER-3_ 5 4
Histoplasma_capsulatum_H143 4 3
Histoplasma_capsulatum_H88 5 4
Histoplasma_capsulatum_G186AR 5 4
Aspergillus_fumigatus_A1163_ 5 4
Candida_albicans_WO-1_ 3 2
Saccharomyces_cerevisiae_UC5 2 1
Saccharomyces_cerevisiae_PW5 3 2
Saccharomyces_cerevisiae_CLIB324 3 2
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 3 2
Saccharomyces_cerevisiae_T7 3 2
Saccharomyces_cerevisiae_FostersB 3 2
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_VL3 2 1
Saccharomyces_cerevisiae_Vin13 3 2
Saccharomyces_cerevisiae_LalvinQA23 2 1
Saccharomyces_cerevisiae_AWRI796 3 2
Saccharomyces_cerevisiae_Sigma1278b 3 2
Saccharomyces_cerevisiae_W303 3 2
Saccharomyces_cerevisiae_JAY291 3 2
Saccharomyces_cerevisiae_AWRI1631 3 2
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_T73 1 1
Saccharomyces_cerevisiae_CLIB215 1 1
Saccharomyces_cerevisiae_Y10 3 2
Saccharomyces_cerevisiae_YJM789_ 3 2
Saccharomyces_cerevisiae_YJM789 3 2
Saccharomyces_cerevisiae_RM11-1a 3 2
Saccharomyces_cerevisiae_RM11-1a_ 3 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3 2
Schizosaccharomyces_pombe_972h-_ 7 5
Batrachochytrium_dendrobatidis_JEL423_ 11 9
Batrachochytrium_dendrobatidis_JAM81_ 8 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   340 80
Hordeum_vulgare_22   (Domesticated barley)   24 19
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   34 25
Trypanosoma_brucei_Lister_427_v4.1 1 1
Neospora_caninum_Nc-Liverpool_6.2 3 2
Plasmodium_falciparum_HB3_ 3 2
Plasmodium_falciparum_Dd2_ 2 1
Methanolobus_psychrophilus_R15 1 1
Natrinema_pellirubrum_DSM_15624 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   83 64
Pan_troglodytes_69_2.1.4   (Chimpanzee)   63 49
Gorilla_gorilla_69_3.1   (Western gorilla)   70 54
Pongo_abelii_69_2   (Sumatran orangutan)   74 57
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   72 56
Macaca_mulatta_69_1   (Rhesus monkey)   73 57
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   75 57
Otolemur_garnettii_69_3   (Small-eared galago)   75 57
Microcebus_murinus_69_1   (Gray mouse lemur)   56 45
Rattus_norvegicus_69_3.4   (Norway rat)   75 59
Mus_musculus_69_38   (House mouse)   77 59
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   60 47
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   68 54
Cavia_porcellus_69_3   (Domestic guinea pig)   99 80
Oryctolagus_cuniculus_69_2   (Rabbit)   70 52
Ochotona_princeps_69   (American pika)   60 48
Tupaia_belangeri_69   (Northern tree shrew)   50 42
Sus_scrofa_69_10.2   (Pig)   66 53
Bos_taurus_69_3.1   (Cattle)   76 58
Vicugna_pacos_69_1   (Alpaca)   39 30
Tursiops_truncatus_69_1   (Bottlenose dolphin)   67 52
Mustela_putorius_furo_69_1.0   (Domestic ferret)   74 58
Ailuropoda_melanoleuca_69_1   (Giant panda)   74 57
Canis_familiaris_69_3.1   (Dog)   77 58
Felis_catus_69   (Domestic cat)   40 35
Equus_caballus_69_2   (Horse)   73 57
Myotis_lucifugus_69_2.0   (Little brown bat)   62 50
Pteropus_vampyrus_69_1   (Large flying fox)   63 52
Sorex_araneus_69_1   (European shrew)   48 41
Erinaceus_europaeus_69   (Western European hedgehog)   48 38
Procavia_capensis_69_1   (Cape rock hyrax)   62 51
Loxodonta_africana_69_3   (African savanna elephant)   73 58
Echinops_telfairi_69   (Small Madagascar hedgehog)   53 45
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   37 29
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   38 29
Macropus_eugenii_69_1.0   (Tammar wallaby)   60 49
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   62 52
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   69 57
Ornithorhynchus_anatinus_69_5   (Platypus)   60 50
Petromyzon_marinus_69_7.0   (Sea lamprey)   32 27
Meleagris_gallopavo_69_2   (Turkey)   53 40
Gallus_gallus_69_2   (Chicken)   59 45
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   61 45
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   63 50
Anolis_carolinensis_69_2.0   (Green anole)   64 50
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   66 51
Latimeria_chalumnae_69_1   (Coelacanth)   71 56
Gadus_morhua_69_1   (Atlantic cod)   88 67
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   91 72
Takifugu_rubripes_69_4   (Torafugu)   94 74
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   90 69
Oryzias_latipes_69_1   (Japanese medaka)   83 66
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   98 76
Oreochromis_niloticus_69_1.0   (Nile tilapia)   102 80
Danio_rerio_69_9   (Zebrafish)   103 82
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   26 19
Ciona_intestinalis_69   (Vase tunicate)   21 17
Drosophila_melanogaster_69_5   (Fruit fly)   32 24
Caenorhabditis_elegans_69_215   (Roundworm)   45 33
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3 2
Arabidopsis_thaliana_10   (Thale cress)   599 152

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   328 270
Homo_sapiens__(NCBI_version)   (Human)   147 112
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   78 60
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   36 30
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   31 26
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   31 23
Moniliophthora_perniciosa_FA553__(Genome_survey) 3 2
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 2 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   8 5
Lotus_japonicus__(Early_assembly) 16 12
Malus_x_domestica_(Duplicate)   (Apple)   48 34
Ricinus_communis__(Early_assembly)   (Castor bean)   22 17
Nicotiana_benthamiana_0.4.4_(Early_draft) 53 35
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   47 27
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   47 27
Phoenix_dactylifera__(Early_draft)   (Date palm)   12 10
NCBI_plasmid_sequences_(Plasmids) 1 1
Core_Eukaryotic_Genes_458_(CEGMA) 5 5
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 135 135
PDB_chains_(SCOP_1.75)_(PDB) 8 8
Protozoadb_2010_08_(Protozoadb) 142 102
STRING_v9.0.5_(STRING) 3819 2595
Uniprot_2018_03_genome 44568 31039
TargetDB__(Targets) 169 130
NCBI_2017_08_genome 66383 48438
Protein_Data_Bank_(all_PDB_sequenc) 60 59

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