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Domain combinations for FYVE/PHD zinc finger superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a FYVE/PHD zinc finger domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   669 557
Pan_troglodytes_76_2.1.4   (Chimpanzee)   164 128
Gorilla_gorilla_76_3.1   (Western gorilla)   242 180
Pongo_abelii_76_2   (Sumatran orangutan)   164 126
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   176 139
Papio_anubis_76   (Olive baboon)   185 145
Macaca_mulatta_76_1   (Rhesus monkey)   267 213
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   371 296
Otolemur_garnettii_76_3   (Small-eared galago)   163 130
Microcebus_murinus_76_1   (Gray mouse lemur)   128 105
Rattus_norvegicus_76_5.0   (Norway rat)   170 141
Mus_musculus_76_38   (House mouse)   456 369
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   121 101
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   154 120
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   152 129
Cavia_porcellus_76_3   (Domestic guinea pig)   159 127
Oryctolagus_cuniculus_76_2   (Rabbit)   169 132
Ochotona_princeps_76   (American pika)   121 99
Tupaia_belangeri_76   (Northern tree shrew)   110 91
Sus_scrofa_76_10.2   (Pig)   181 149
Bos_taurus_76_3.1   (Cattle)   175 132
Ovis_aries_76_3.1   (Sheep)   195 153
Vicugna_pacos_76_1   (Alpaca)   87 72
Tursiops_truncatus_76_1   (Bottlenose dolphin)   147 118
Mustela_putorius_furo_76_1.0   (Domestic ferret)   166 129
Ailuropoda_melanoleuca_76_1   (Giant panda)   174 135
Canis_familiaris_76_3.1   (Dog)   235 179
Felis_catus_76_6.2   (Domestic cat)   167 133
Equus_caballus_76_2   (Horse)   194 147
Myotis_lucifugus_76_2.0   (Little brown bat)   173 134
Pteropus_vampyrus_76_1   (Large flying fox)   154 124
Sorex_araneus_76_1   (European shrew)   100 81
Erinaceus_europaeus_76   (Western European hedgehog)   99 85
Procavia_capensis_76_1   (Cape rock hyrax)   143 113
Loxodonta_africana_76_3   (African savanna elephant)   244 193
Echinops_telfairi_76   (Small Madagascar hedgehog)   107 90
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   191 160
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   91 75
Macropus_eugenii_76_1.0   (Tammar wallaby)   120 99
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   199 156
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   167 131
Ornithorhynchus_anatinus_76_5   (Platypus)   128 100
Saccoglossus_kowalevskii_v3.0 291 229
Petromyzon_marinus_76_7.0   (Sea lamprey)   81 62
Meleagris_gallopavo_76_2   (Turkey)   167 133
Gallus_gallus_76_4   (Chicken)   189 147
Anas_platyrhynchos_76_1.0   (Mallard)   139 112
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   170 128
Ficedula_albicollis_76_1.0   (Collared flycatcher)   145 117
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   156 126
Anolis_carolinensis_76_2.0   (Green anole)   150 116
Xenopus_laevis_   (African clawed frog)   202 178
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   175 140
Latimeria_chalumnae_76_1   (Coelacanth)   185 142
Lepisosteus_oculatus_76   (Spotted gar)   215 167
Gadus_morhua_76_1   (Atlantic cod)   180 140
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   240 185
Takifugu_rubripes_76_4   (Torafugu)   607 471
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   228 177
Oryzias_latipes_76_1   (Japanese medaka)   206 159
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   201 149
Poecilia_formosa_76   (Amazon molly)   210 154
Oreochromis_niloticus_76_1.0   (Nile tilapia)   278 219
Astyanax_mexicanus_76   (Mexican tetra)   200 158
Danio_rerio_76_9   (Zebrafish)   363 276
Oikopleura_dioica 56 51
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   115 84
Ciona_intestinalis_76   (Vase tunicate)   68 59
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   185 161
Adineta_vaga 245 190
Octopus_bimaculoides_280 172 147
Crassostrea_gigas_22   (Pacific oyster)   137 111
Lottia_gigantea_   (Owl limpet)   103 82
Helobdella_robusta_ 209 195
Capitella_sp._I_ 118 99
Danaus_plexippus_OGS1.0   (Monarch butterfly)   91 73
Heliconius_melpomene_   (Postman butterfly)   65 53
Bombyx_mori_   (Domestic silkworm)   72 61
Nasonia_vitripennis_   (Jewel wasp)   70 50
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   132 100
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   81 65
Linepithema_humile_v1.1   (Argentine ant)   92 72
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   80 67
Solenopsis_invicta_v.2.2.3   (Red fire ant)   72 60
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   86 66
Atta_cephalotes_v1.1 86 65
Camponotus_floridanus_v3.3   (Florida carpenter ant)   92 71
Lucilia_cuprina   (Australian sheep blowfly)   106 90
Drosophila_grimshawi_1.3 89 69
Drosophila_willistoni_1.3 99 78
Drosophila_pseudoobscura_2.13 83 64
Drosophila_persimilis_1.3 78 63
Drosophila_suzukii 83 65
Drosophila_yakuba_1.3 79 62
Drosophila_simulans_1.3 64 58
Drosophila_sechellia_1.3 82 65
Drosophila_melanogaster_76_5   (Fruit fly)   204 157
Drosophila_erecta_1.3 84 65
Drosophila_ananassae_1.3 85 67
Drosophila_virilis_1.2 83 66
Drosophila_mojavensis_1.3 84 65
Megaselia_scalaris_22 31 23
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   107 91
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   118 101
Anopheles_darlingi_22   (American malaria mosquito)   59 46
Anopheles_gambiae_49_3j   (African malaria mosquito)   74 64
Tribolium_castaneum_3.0   (Red flour beetle)   97 78
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   82 62
Acyrthosiphon_pisum_   (Pea aphid)   88 73
Rhodnius_prolixus_22 82 73
Daphnia_pulex_   (Common water flea)   118 98
Strigamia_maritima_22 94 74
Sarcoptes_scabiei 54 42
Tetranychus_urticae_   (Two-spotted spider mite)   88 66
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   74 59
Pristionchus_pacificus_ 53 47
Meloidogyne_incognita_   (Southern root-knot nematode)   68 52
Meloidogyne_hapla_ 32 24
Onchocerca_volvulus_22 62 49
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   113 84
Caenorhabditis_japonica_ 61 53
Caenorhabditis_brenneri_ 103 85
Caenorhabditis_remanei_ 83 74
Caenorhabditis_elegans_76_235   (Roundworm)   122 104
Caenorhabditis_briggsae_2 67 57
Trichinella_spiralis_22 52 47
Hymenolepis_microstoma_ 83 63
Echinococcus_multilocularis_ 82 64
Echinococcus_granulosus_ 78 60
Taenia_solium_   (Pork tapeworm)   71 57
Schistosoma_mansoni_ 101 74
Mnemiopsis_leidyi   (Sea walnut)   154 134
Thelohanellus_kitauei 22 20
Acropora_digitifera_v1.0 92 81
Nematostella_vectensis_1.0   (Starlet sea anemone)   115 97
Hydra_vulgaris 98 73
Amphimedon_queenslandica 162 153
Trichoplax_adhaerens_ 67 55
Proterospongia_sp._ATCC_50818_ 67 57
Monosiga_brevicollis_ 51 47
Sphaeroforma_arctica_JP610_ 69 58
Capsaspora_owczarzaki_ATCC_30864_ 76 67
Conidiobolus_coronatus_NRRL28638_v1.0 36 31
Mortierella_verticillata_NRRL_6337_ 49 42
Phycomyces_blakesleeanus_ 58 52
Rhizopus_oryzae_RA_99-880_ 48 41
Mucor_circinelloides_ 50 47
Rhizomucor_miehei_CAU432_ 44 37
Malassezia_globosa_CBS_7966_ 46 40
Sporisorium_reilianum_22 29 24
Ustilago_maydis_ 27 22
Mixia_osmundae_IAM_14324_v1.0 23 21
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 25 23
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 21 21
Melampsora_laricis-populina_ 21 21
Rhodotorula_graminis_WP1_v1.0 23 22
Sporobolomyces_roseus_IAM_13481_ 15 14
Microbotryum_violaceum_22 27 24
Wallemia_sebi_v1.0 18 15
Sphaerobolus_stellatus_v1.0 34 30
Piloderma_croceum_F_1598_v1.0 34 30
Serpula_lacrymans_var._lacrymans_S7.9_ 21 19
Coniophora_puteana 33 30
Hydnomerulius_pinastri_v2.0 32 29
Paxillus_rubicundulus_Ve08.2h10_v1.0 32 29
Pisolithus_microcarpus_441_v1.0 41 38
Pisolithus_tinctorius_Marx_270_v1.0 31 26
Scleroderma_citrinum_Foug_A_v1.0 33 29
Coprinopsis_cinerea_okayama7_130_v3 32 29
Pleurotus_ostreatus_   (Oyster mushroom)   28 27
Amanita_thiersii_Skay4041_v1.0 30 26
Amanita_muscaria_Koide_v1.0   (Fly agaric)   29 25
Galerina_marginata_v1.0 55 52
Hebeloma_cylindrosporum_h7_v2.0 48 45
Laccaria_bicolor_S238N-H82_ 50 48
Agaricus_bisporus_var._bisporus_ 29 24
Schizophyllum_commune_ 31 28
Stereum_hirsutum_FP-91666_SS1__v1.0 35 32
Heterobasidion_annosum_ 24 22
Gloeophyllum_trabeumv1.0 30 27
Punctularia_strigosozonata_v1.0 25 24
Sebacina_vermifera_MAFF_305830_v1.0 32 30
Fomitiporia_mediterranea_v1.0 24 21
Tulasnella_calospora_AL13/4D_v1.0 31 28
Postia_placenta_ 31 29
Wolfiporia_cocos_MD-104_SS10__v1.0 29 25
Fomitopsis_pinicolav1.0 36 32
Fomitopsis_pinicola_FP-58527_SS1_v3.0 37 33
Phanerochaete_chrysosporium_RP-78_2.1 21 19
Dichomitus_squalens 28 25
Trametes_versicolor_v1.0 31 27
Tremella_mesenterica_   (Witches' butter)   26 22
Daldinia_eschscholzii_EC12_v1.0 31 27
Apiospora_montagnei_NRRL_25634_v1.0 30 26
Magnaporthe_poae_ATCC_64411_22 25 21
Magnaporthe_grisea_70-15_ 27 23
Podospora_anserina_ 29 25
Sporotrichum_thermophile_ATCC_42464_ 28 24
Thielavia_terrestris_NRRL_8126_ 29 26
Chaetomium_globosum_CBS_148.51_ 24 21
Neurospora_tetrasperma_ 27 22
Neurospora_discreta_FGSC_8579_ 26 21
Neurospora_crassa_OR74A_ 30 26
Cryphonectria_parasitica_   (Chestnut blight fungus)   28 25
Verticillium_albo-atrum_VaMs.102_ 26 22
Verticillium_dahliae_VdLs.17_ 24 21
Acremonium_alcalophilumv_1.0 26 22
Glomerella_graminicola_22 30 26
Fusarium_graminearum_ 25 23
Nectria_haematococca_mpVI_ 27 24
Fusarium_oxysporum_f._sp._lycopersici_4286_ 27 25
Fusarium_verticillioides_7600_ 26 23
Trichoderma_asperellum_CBS_433.97_v1.0 32 28
Trichoderma_atroviride_ 30 27
Trichoderma_citrinoviride_v1.0 29 25
Trichoderma_reesei_1.2 26 22
Trichoderma_virens_Gv29-8_ 28 26
Trichoderma_longibrachiatum_ATCC_18648_v1.0 28 25
Trichoderma_harzianum_CBS_226.95_v1.0 34 30
Amorphotheca_resinae_v1.0   (Creosote fungus)   31 27
Botrytis_cinerea_B05.10_ 27 23
Sclerotinia_sclerotiorum_ 27 23
Blumeria_graminis_22 25 21
Didymella_exigua_CBS_183.55_v1.0 28 24
Leptosphaeria_maculans_22 33 29
Setosphaeria_turcica_v1.0 35 29
Cochliobolus_miyabeanus_ATCC_44560_v1.0 35 31
Cochliobolus_victoriae_FI3_v1.0 34 29
Cochliobolus_carbonum_26-R-13_v1.0 33 29
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   26 22
Alternaria_brassicicola_ 29 25
Cochliobolus_lunatus_m118_v2.0 31 27
Pyrenophora_teres_f._teres_22 37 31
Pyrenophora_tritici-repentis_ 33 28
Stagonospora_nodorum_ 29 27
Mycosphaerella_graminicola_IPO323_ 32 28
Zasmidium_cellare_ATCC_36951_v1.0 40 36
Dothistroma_septosporum 44 40
Septoria_musiva_v1.0 40 36
Mycosphaerella_fijiensis_CIRAD86_ 29 26
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 36 32
Paracoccidioides_brasiliensis_Pb18_ 25 21
Coccidioides_posadasii_RMSCC_3488_ 28 24
Coccidioides_immitis_RS_ 28 24
Ajellomyces_dermatitidis_SLH14081_ 28 25
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 23 19
Microsporum_canis_CBS_113480_ 25 22
Trichophyton_equinum_CBS_127.97_ 23 20
Trichophyton_verrucosum_HKI_0517_ 23 20
Arthroderma_benhamiae_CBS_112371_ 22 19
Trichophyton_tonsurans_CBS_112818_ 26 23
Trichophyton_rubrum_CBS_118892_ 28 24
Uncinocarpus_reesii_1704_ 23 20
Aspergillus_zonatus_v1.0 28 24
Penicillium_chrysogenum_Wisconsin_54-1255_ 31 27
Penicillium_chrysogenum_v1.0 31 27
Aspergillus_acidus_v1.0 30 26
Aspergillus_fumigatus_Af293 29 25
Aspergillus_brasiliensis_v1.0 27 24
Aspergillus_nidulans_FGSC_A4_ 29 26
Aspergillus_sydowii_v1.0 28 24
Aspergillus_versicolor_v1.0 29 25
Aspergillus_glaucus 32 28
Aspergillus_carbonarius_ITEM_5010_ 31 27
Neosartorya_fischeri_NRRL_181_ 29 25
Aspergillus_terreus_NIH2624_ 29 25
Aspergillus_tubingensis_v1.0 26 23
Aspergillus_wentii_v1.0 31 27
Aspergillus_oryzae_RIB40_ 23 20
Aspergillus_niger_22 28 25
Aspergillus_niger_ATCC_1015_ 22 18
Aspergillus_flavus_NRRL3357_ 29 25
Aspergillus_clavatus_NRRL_1_ 29 25
Penicillium_marneffei_ATCC_18224_ 34 30
Tuber_melanosporum_Mel28_22 24 20
Tuber_melanosporum_Vittad_   (Perigord truffle)   24 20
Hansenula_polymorpha_v2.0 21 18
Dekkera_bruxellensis_CBS_2499_v2.0 21 19
Pichia_membranifaciensv1.0 24 21
Candida_tanzawaensis_NRRL_Y-17324__v1.0 24 21
Candida_dubliniensis_CD36_ 23 20
Candida_tropicalis_MYA-3404_ 23 20
Candida_parapsilosis_ 23 20
Candida_albicans_SC5314 23 20
Lodderomyces_elongisporus_NRRL_YB-4239_ 23 20
Babjeviella_inositovora_NRRL_Y-12698_v1.0 22 20
Pichia_stipitis_CBS_6054_ 24 21
Candida_guilliermondii_ATCC_6260_ 23 20
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 22 19
Debaromyces_hansenii 23 20
Wickerhamomyces_anomalus 24 22
Pichia_pastoris_GS115_ 22 19
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 11 11
Yarrowia_lipolytica_CLIB122 24 21
Candida_lusitaniae_ATCC_42720_ 23 21
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 21 19
Vanderwaltozyma_polyspora_DSM_70294_ 22 20
Candida_glabrata_CBS138 18 16
Kluyveromyces_thermotolerans_CBS_6340 21 19
Lachancea_kluyveri_ 21 18
Kluyveromyces_waltii 21 18
Ashbya_gossypii_ATCC_10895_ 24 20
Zygosaccharomyces_rouxii_ 23 20
Saccharomyces_mikatae_MIT 22 20
Saccharomyces_paradoxus_MIT 25 22
Saccharomyces_cerevisiae_76   (Baker's yeast)   24 21
Saccharomyces_bayanus_MIT 21 18
Kluyveromyces_lactis 22 19
Schizosaccharomyces_cryophilus_OY26_22 29 23
Schizosaccharomyces_octosporus_yFS286_ 30 24
Schizosaccharomyces_japonicus_yFS275_ 30 24
Schizosaccharomyces_pombe   (Fission yeast)   31 25
Catenaria_anguillulae_PL171_v1.0 31 28
Allomyces_macrogynus_ATCC_38327_ 59 45
Spizellomyces_punctatus_DAOM_BR117_ 34 28
Dictyostelium_discoideum 44 36
Dictyostelium_purpureum_ 40 33
Entamoeba_dispar_1.2 19 18
Entamoeba_invadens_1.2 31 30
Entamoeba_histolytica_1 19 18
Selaginella_moellendorffii_ 156 145
Pinus_taeda   (Loblolly pine)   92 80
Picea_abies   (Norway spruce)   68 61
Eucalyptus_grandis_v201   (Rose gum)   160 138
Theobroma_cacao_B97-61/B2_v1   (Cacao)   110 95
Gossypium_raimondii_v221 481 390
Citrus_clementina_v165 168 139
Citrus_sinensis_v154   (Sweet orange)   266 217
Thellungiella_halophila_v173 131 111
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   171 141
Capsella_rubella_v183 139 118
Arabidopsis_lyrata_   (Lyrate rockcress)   121 103
Arabidopsis_thaliana_10   (Thale cress)   159 137
Carica_papaya_   (Papaya)   88 78
Medicago_truncatula_   (Barrel medic)   237 195
Phaseolus_vulgaris_v186   (French bean)   160 139
Glycine_max_v109   (Soybean)   258 224
Cucumis_sativus_v122   (Cucumber)   135 121
Fragaria_vesca_   (Wild strawberry)   116 100
Malus_domestica_v196   (Apple)   195 168
Prunus_persica_v139   (Peach)   106 91
Linum_usitatissimum_v200   (Flax)   190 161
Manihot_esculenta_v147   (Cassava)   160 137
Populus_trichocarpa_v156   (Black cottonwood)   176 148
Vitis_vinifera_   (Wine grape)   96 82
Mimulus_guttatus_v140   (Spotted monkey flower)   120 108
Solanum_lycopersicum_v.2.3   (Tomato)   135 116
Solanum_tuberosum_   (Potato)   136 126
Actinidia_chinensis_Hongyang_ 135 120
Aquilegia_coerulea_v195 214 183
Triticum_urartu_22 99 86
Triticum_aestivum_22   (Bread wheat)   327 290
Aegilops_tauschii_22 104 92
Brachypodium_distachyon_   (Stiff brome)   161 140
Oryza_barthii_22   (African wild rice)   164 144
Oryza_meridionalis_22 181 152
Oryza_glumaepatula_22 204 178
Oryza_glaberrima   (African rice)   112 100
Oryza_punctata_22 198 174
Oryza_nivara_22 183 160
Oryza_brachyantha_22   (Malo sina)   123 104
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   152 136
Oryza_sativa_v193   (Rice)   152 136
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   173 149
Panicum_virgatum_v202   (Switchgrass)   243 214
Setaria_italica_v164   (Foxtail millet)   165 141
Zea_mays_subsp._mays_   (Maize)   236 210
Zea_mays_v181   (Maize)   253 226
Sorghum_bicolor_   (Sorghum)   123 111
Musa_balbisiana   (Balbis banana)   128 116
Musa_acuminata_22   (Wild Malaysian banana)   167 147
Amborella_trichopoda_22 101 88
Physcomitrella_patens 105 90
Coccomyxa_subellipsoidea_sp._C-169_v2 37 31
Asterochloris_sp._Cgr/DA1pho_v1.0 25 20
Chlorella_variabilis_sp._NC64A_ 34 32
Chlorella_vulgaris_ 39 33
Volvox_carteri_f._nagariensis_ 30 30
Volvox_carteri_v199 22 20
Chlamydomonas_reinhardtii_4.0 52 49
Ostreococcus_sp._RCC809_ 21 20
Ostreococcus_lucimarinus_CCE9901_ 22 20
Ostreococcus_tauri_ 18 15
Bathycoccus_prasinos_ 31 27
Micromonas_sp._RCC299_ 32 28
Micromonas_pusilla_CCMP1545_v3.0 39 32
Cyanidioschyzon_merolae_strain_10D_22 16 15
Cyanidioschyzon_merolae 16 15
Porphyridium_purpureum_02_2012 26 20
Thecamonas_trahens_ATCC_50062_ 58 49
Bigelowiella_natans_CCMP2755_22 69 65
Giardia_lamblia_2.3 5 5
Cyanophora_paradoxa_ 30 26
Leishmania_mexicana_2.4 28 26
Leishmania_major_strain_Friedlin_ 26 24
Leishmania_infantum_JPCM5_2.4 25 23
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 28 26
Trypanosoma_vivax_ 22 21
Trypanosoma_cruzi_strain_CL_Brener 29 28
Trypanosoma_congolense_2.4 26 25
Trypanosoma_brucei_gambiense_v4.1 31 30
Trypanosoma_brucei_TREU927_v4.1 31 30
Ectocarpus_siliculosus 98 80
Aureococcus_anophagefferens_ 49 44
Albugo_laibachii_22 214 194
Pythium_iwayamai_DAOM_BR242034_22 194 179
Pythium_arrhenomanes_ATCC_12531_22 196 177
Pythium_ultimum_v1.7-2 232 219
Pythium_aphanidermatum_DAOM_BR444_22 212 193
Pythium_irregulare_DAOM_BR486_22 241 221
Pythium_vexans_DAOM_BR484_22 230 204
Phytophthora_ramorum_1.1   (Sudden oak death agent)   239 228
Phytophthora_sojae_1.1 247 234
Phytophthora_infestans_T30-4_ 254 237
Phytophthora_capsici_ 176 169
Hyaloperonospora_arabidopsidis_22 184 171
Phaeodactylum_tricornutumCCAP_1055/1 33 31
Fragilariopsis_cylindrus 63 59
Thalassiosira_pseudonana_CCMP1335 43 36
Perkinsus_marinus_ATCC_50983_ 49 43
Paramecium_tetraurelia_ 178 157
Tetrahymena_thermophila_SB210_1_ 48 41
Ichthyophthirius_multifiliis_strain_G5_ 14 14
Cryptosporidium_hominis 16 13
Cryptosporidium_muris 20 15
Cryptosporidium_parvum_Iowa_II 22 14
Neospora_caninum 27 21
Toxoplasma_gondii_VEG 25 18
Toxoplasma_gondii_ME49 26 18
Toxoplasma_gondii_GT1 25 18
Babesia_bovis_T2Bo_ 22 16
Theileria_parva__ 15 11
Theileria_annulata 14 10
Plasmodium_falciparum_3D7_ 15 10
Plasmodium_vivax_SaI-1_7.0 14 9
Plasmodium_knowlesi_strain_H_ 16 11
Plasmodium_yoelii_ssp._yoelii_1_ 11 8
Plasmodium_chabaudi_ 14 9
Plasmodium_berghei_ANKA_ 13 8
Symbiodinium_minutum_clade_B1_v1.2 42 38
Naegleria_gruberi_ 16 12
Trichomonas_vaginalis_ 38 29
Guillardia_theta_CCMP2712_v1.0_ 48 41
Emiliania_huxleyi_CCMP1516_ 110 99
Acaryochloris_marina_MBIC11017 1 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1 1
Thermaerobacter_marianensis_DSM_12885 1 1
butyrate-producing_bacterium_SM4/1 1 1
Thermodesulfatator_indicus_DSM_15286 1 1
Thermodesulfobacterium_sp._OPB45 1 1
Candidatus_Nitrospira_defluvii 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Thermogladius_cellulolyticus_1633 1 1
Ignisphaera_aggregans_DSM_17230 1 1
Ignicoccus_hospitalis_KIN4/I 1 1
Desulfurococcus_fermentans_DSM_16532 1 1
Sulfolobus_acidocaldarius_DSM_639 1 1
Thermofilum_pendens_Hrk_5 1 1
Pyrobaculum_sp._1860 1 1
Pyrobaculum_calidifontis_JCM_11548 1 1
Pyrobaculum_arsenaticum_DSM_13514 1 1
Thermoproteus_uzoniensis_768-20 1 1
Thermoproteus_tenax_Kra_1 2 2
Methanocella_arvoryzae_MRE50 2 2
Methanocella_paludicola_SANAE 2 2
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanospirillum_hungatei_JF-1 1 1
Archaeoglobus_fulgidus_DSM_4304 1 1
Thermococcus_sp._4557 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Haloterrigena_turkmenica_DSM_5511 1 1
Halomicrobium_mukohataei_DSM_12286 1 1
Methanotorris_igneus_Kol_5 1 1
Methanosphaera_stadtmanae_DSM_3091 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   268 216
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   143 111
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   92 79
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   56 46
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   94 78
Cryptococcus_neoformans_var._grubii_H99_ 29 25
Cryptococcus_neoformans_B-3501A_ 32 28
Cryptococcus_neoformans_JEC21_ 34 30
Paracoccidioides_brasiliensis_Pb01_ 25 22
Paracoccidioides_brasiliensis_Pb03_ 27 23
Coccidioides_posadasii_str._Silveira_ 26 23
Coccidioides_immitis_RMSCC_3703_ 24 22
Coccidioides_immitis_RMSCC_2394_ 26 23
Coccidioides_immitis_H538.4_ 20 17
Ajellomyces_dermatitidis_ER-3_ 28 24
Histoplasma_capsulatum_H143 22 20
Histoplasma_capsulatum_H88 26 24
Histoplasma_capsulatum_G186AR 25 23
Aspergillus_fumigatus_A1163_ 30 26
Candida_albicans_WO-1_ 23 20
Saccharomyces_cerevisiae_UC5 21 17
Saccharomyces_cerevisiae_PW5 19 17
Saccharomyces_cerevisiae_FL100 14 13
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CLIB324 5 5
Saccharomyces_cerevisiae_CBS7960 20 18
Saccharomyces_cerevisiae_YJM269 23 19
Saccharomyces_cerevisiae_T7 25 21
Saccharomyces_cerevisiae_FostersB 15 13
Saccharomyces_cerevisiae_FostersO 16 15
Saccharomyces_cerevisiae_VL3 19 16
Saccharomyces_cerevisiae_Vin13 19 17
Saccharomyces_cerevisiae_LalvinQA23 20 18
Saccharomyces_cerevisiae_AWRI796 16 14
Saccharomyces_cerevisiae_Sigma1278b 24 21
Saccharomyces_cerevisiae_W303 23 20
Saccharomyces_cerevisiae_JAY291 25 21
Saccharomyces_cerevisiae_AWRI1631 13 11
Saccharomyces_cerevisiae_YPS163 7 7
Saccharomyces_cerevisiae_M22 9 8
Saccharomyces_cerevisiae_T73 12 10
Saccharomyces_cerevisiae_CLIB215 17 16
Saccharomyces_cerevisiae_Y10 10 9
Saccharomyces_cerevisiae_YJM789_ 25 21
Saccharomyces_cerevisiae_YJM789 25 21
Saccharomyces_cerevisiae_RM11-1a 24 21
Saccharomyces_cerevisiae_RM11-1a_ 24 21
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   24 21
Schizosaccharomyces_pombe_972h-_ 31 25
Batrachochytrium_dendrobatidis_JEL423_ 30 25
Batrachochytrium_dendrobatidis_JAM81_ 32 26
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   111 97
Hordeum_vulgare_22   (Domesticated barley)   342 303
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   112 100
Trypanosoma_brucei_Lister_427_v4.1 31 30
Neospora_caninum_Nc-Liverpool_6.2 27 21
Plasmodium_falciparum_HB3_ 15 10
Plasmodium_falciparum_Dd2_ 11 6
Arthrospira_platensis_NIES-39 1 1
Ruminococcus_champanellensis_18P13 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Carnobacterium_maltaromaticum_LMA28 1 1
Melissococcus_plutonius_ATCC_35311 1 1
Desulfocapsa_sulfexigens_DSM_10523 3 3
Myxococcus_stipitatus_DSM_14675 1 1
Bradyrhizobium_japonicum_USDA_6 1 1
Pseudomonas_fluorescens_F113 1 1
Caldisphaera_lagunensis_DSM_15908 1 1
Sulfolobus_islandicus_Y.G.57.14 1 1
Sulfolobus_acidocaldarius_SUSAZ 1 1
Sulfolobus_acidocaldarius_Ron12/I 1 1
Methanomethylovorans_hollandica_DSM_15978 1 1
Methanolobus_psychrophilus_R15 2 2
Methanosarcina_mazei_Tuc01 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Thermococcus_sp._AM4 1 1
Thermococcus_sp._CL1 1 1
Natronococcus_occultus_SP4 1 1
Methanococcus_maripaludis_X1 1 1
Methanococcus_maripaludis_C6 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   187 146
Pan_troglodytes_69_2.1.4   (Chimpanzee)   156 121
Gorilla_gorilla_69_3.1   (Western gorilla)   162 126
Pongo_abelii_69_2   (Sumatran orangutan)   155 120
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   159 125
Macaca_mulatta_69_1   (Rhesus monkey)   148 117
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   165 130
Otolemur_garnettii_69_3   (Small-eared galago)   159 127
Microcebus_murinus_69_1   (Gray mouse lemur)   128 105
Rattus_norvegicus_69_3.4   (Norway rat)   154 123
Mus_musculus_69_38   (House mouse)   176 133
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   121 101
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   143 112
Cavia_porcellus_69_3   (Domestic guinea pig)   157 125
Oryctolagus_cuniculus_69_2   (Rabbit)   149 115
Ochotona_princeps_69   (American pika)   121 99
Tupaia_belangeri_69   (Northern tree shrew)   110 91
Sus_scrofa_69_10.2   (Pig)   143 118
Bos_taurus_69_3.1   (Cattle)   157 120
Vicugna_pacos_69_1   (Alpaca)   87 72
Tursiops_truncatus_69_1   (Bottlenose dolphin)   147 118
Mustela_putorius_furo_69_1.0   (Domestic ferret)   166 129
Ailuropoda_melanoleuca_69_1   (Giant panda)   161 125
Canis_familiaris_69_3.1   (Dog)   163 129
Felis_catus_69   (Domestic cat)   106 91
Equus_caballus_69_2   (Horse)   158 122
Myotis_lucifugus_69_2.0   (Little brown bat)   168 130
Pteropus_vampyrus_69_1   (Large flying fox)   154 124
Sorex_araneus_69_1   (European shrew)   100 81
Erinaceus_europaeus_69   (Western European hedgehog)   99 85
Procavia_capensis_69_1   (Cape rock hyrax)   143 113
Loxodonta_africana_69_3   (African savanna elephant)   158 127
Echinops_telfairi_69   (Small Madagascar hedgehog)   107 90
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   96 82
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   91 75
Macropus_eugenii_69_1.0   (Tammar wallaby)   120 99
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   159 124
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   160 125
Ornithorhynchus_anatinus_69_5   (Platypus)   120 92
Petromyzon_marinus_69_7.0   (Sea lamprey)   71 54
Meleagris_gallopavo_69_2   (Turkey)   150 118
Gallus_gallus_69_2   (Chicken)   160 126
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   169 127
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   133 109
Anolis_carolinensis_69_2.0   (Green anole)   143 110
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   142 112
Latimeria_chalumnae_69_1   (Coelacanth)   142 109
Gadus_morhua_69_1   (Atlantic cod)   177 137
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   194 149
Takifugu_rubripes_69_4   (Torafugu)   203 151
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   195 147
Oryzias_latipes_69_1   (Japanese medaka)   181 137
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   201 149
Oreochromis_niloticus_69_1.0   (Nile tilapia)   199 155
Danio_rerio_69_9   (Zebrafish)   207 159
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   50 39
Ciona_intestinalis_69   (Vase tunicate)   66 57
Drosophila_melanogaster_69_5   (Fruit fly)   83 64
Caenorhabditis_elegans_69_215   (Roundworm)   68 56
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   24 21
Arabidopsis_thaliana_10   (Thale cress)   121 102

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   764 633
Homo_sapiens__(NCBI_version)   (Human)   307 244
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   174 135
Heliconius_numata__(Incomplete) 11 11
Loa_loa_v3.3_(Request)   (Eye worm)   70 54
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   61 50
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   60 48
Moniliophthora_perniciosa_FA553__(Genome_survey) 7 7
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 3 3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   8 8
Lotus_japonicus__(Early_assembly) 84 76
Malus_x_domestica_(Duplicate)   (Apple)   195 168
Ricinus_communis__(Early_assembly)   (Castor bean)   99 84
Nicotiana_benthamiana_0.4.4_(Early_draft) 217 189
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   133 115
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   135 116
Phoenix_dactylifera__(Early_draft)   (Date palm)   78 69
NCBI_plasmid_sequences_(Plasmids) 1 1
Protozoadb_2010_08_(Protozoadb) 670 545
Protein_Data_Bank_(all_PDB_sequenc) 734 700
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 908 908
TargetDB__(Targets) 268 237
STRING_v9.0.5_(STRING) 9312 7677
Uniprot_2018_03_genome 117615 97856
NCBI_2017_08_genome 162508 126514
PDB_chains_(SCOP_1.75)_(PDB) 26 26
NCBI_viral_sequences_(Viral) 10 10
UniProt__viral_sequences_(Viral) 3 3

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