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Domain combinations for Leucine zipper domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Leucine zipper domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   191 191
Pan_troglodytes_76_2.1.4   (Chimpanzee)   49 49
Gorilla_gorilla_76_3.1   (Western gorilla)   67 67
Pongo_abelii_76_2   (Sumatran orangutan)   47 47
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   53 53
Papio_anubis_76   (Olive baboon)   57 57
Macaca_mulatta_76_1   (Rhesus monkey)   78 78
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   94 94
Otolemur_garnettii_76_3   (Small-eared galago)   48 48
Microcebus_murinus_76_1   (Gray mouse lemur)   34 34
Rattus_norvegicus_76_5.0   (Norway rat)   60 60
Mus_musculus_76_38   (House mouse)   128 128
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   30 30
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   47 47
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   52 52
Cavia_porcellus_76_3   (Domestic guinea pig)   50 50
Oryctolagus_cuniculus_76_2   (Rabbit)   44 44
Ochotona_princeps_76   (American pika)   30 30
Tupaia_belangeri_76   (Northern tree shrew)   30 30
Sus_scrofa_76_10.2   (Pig)   56 56
Bos_taurus_76_3.1   (Cattle)   52 52
Ovis_aries_76_3.1   (Sheep)   50 50
Vicugna_pacos_76_1   (Alpaca)   20 20
Tursiops_truncatus_76_1   (Bottlenose dolphin)   38 38
Mustela_putorius_furo_76_1.0   (Domestic ferret)   50 50
Ailuropoda_melanoleuca_76_1   (Giant panda)   50 50
Canis_familiaris_76_3.1   (Dog)   63 63
Felis_catus_76_6.2   (Domestic cat)   44 44
Equus_caballus_76_2   (Horse)   43 43
Myotis_lucifugus_76_2.0   (Little brown bat)   46 46
Pteropus_vampyrus_76_1   (Large flying fox)   44 44
Sorex_araneus_76_1   (European shrew)   22 22
Erinaceus_europaeus_76   (Western European hedgehog)   21 21
Procavia_capensis_76_1   (Cape rock hyrax)   32 32
Loxodonta_africana_76_3   (African savanna elephant)   52 52
Echinops_telfairi_76   (Small Madagascar hedgehog)   22 22
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   62 62
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   21 21
Macropus_eugenii_76_1.0   (Tammar wallaby)   30 30
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   50 50
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   44 44
Ornithorhynchus_anatinus_76_5   (Platypus)   40 40
Saccoglossus_kowalevskii_v3.0 60 58
Petromyzon_marinus_76_7.0   (Sea lamprey)   21 21
Meleagris_gallopavo_76_2   (Turkey)   33 33
Gallus_gallus_76_4   (Chicken)   38 38
Anas_platyrhynchos_76_1.0   (Mallard)   36 36
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   38 38
Ficedula_albicollis_76_1.0   (Collared flycatcher)   40 40
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   43 43
Anolis_carolinensis_76_2.0   (Green anole)   46 46
Xenopus_laevis_   (African clawed frog)   97 97
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   54 54
Latimeria_chalumnae_76_1   (Coelacanth)   59 59
Lepisosteus_oculatus_76   (Spotted gar)   52 52
Gadus_morhua_76_1   (Atlantic cod)   54 54
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   70 70
Takifugu_rubripes_76_4   (Torafugu)   162 161
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   71 71
Oryzias_latipes_76_1   (Japanese medaka)   64 64
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   68 68
Poecilia_formosa_76   (Amazon molly)   70 70
Oreochromis_niloticus_76_1.0   (Nile tilapia)   90 90
Astyanax_mexicanus_76   (Mexican tetra)   72 72
Danio_rerio_76_9   (Zebrafish)   108 108
Oikopleura_dioica 34 33
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   20 20
Ciona_intestinalis_76   (Vase tunicate)   24 24
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   24 23
Adineta_vaga 53 53
Octopus_bimaculoides_280 26 25
Crassostrea_gigas_22   (Pacific oyster)   42 39
Lottia_gigantea_   (Owl limpet)   36 36
Helobdella_robusta_ 26 26
Capitella_sp._I_ 30 30
Danaus_plexippus_OGS1.0   (Monarch butterfly)   19 19
Heliconius_melpomene_   (Postman butterfly)   15 15
Bombyx_mori_   (Domestic silkworm)   17 17
Nasonia_vitripennis_   (Jewel wasp)   19 19
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   25 25
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   20 20
Linepithema_humile_v1.1   (Argentine ant)   17 17
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20 20
Solenopsis_invicta_v.2.2.3   (Red fire ant)   16 16
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   19 19
Atta_cephalotes_v1.1 17 17
Camponotus_floridanus_v3.3   (Florida carpenter ant)   19 19
Lucilia_cuprina   (Australian sheep blowfly)   17 17
Drosophila_grimshawi_1.3 16 16
Drosophila_willistoni_1.3 17 17
Drosophila_pseudoobscura_2.13 16 16
Drosophila_persimilis_1.3 15 15
Drosophila_suzukii 13 13
Drosophila_yakuba_1.3 16 16
Drosophila_simulans_1.3 16 16
Drosophila_sechellia_1.3 18 18
Drosophila_melanogaster_76_5   (Fruit fly)   69 69
Drosophila_erecta_1.3 17 17
Drosophila_ananassae_1.3 14 14
Drosophila_virilis_1.2 15 15
Drosophila_mojavensis_1.3 15 15
Megaselia_scalaris_22 8 8
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   24 24
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   22 22
Anopheles_darlingi_22   (American malaria mosquito)   16 16
Anopheles_gambiae_49_3j   (African malaria mosquito)   22 22
Tribolium_castaneum_3.0   (Red flour beetle)   21 21
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   18 18
Acyrthosiphon_pisum_   (Pea aphid)   19 19
Rhodnius_prolixus_22 14 14
Daphnia_pulex_   (Common water flea)   24 24
Strigamia_maritima_22 24 24
Sarcoptes_scabiei 14 14
Tetranychus_urticae_   (Two-spotted spider mite)   30 30
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   19 19
Pristionchus_pacificus_ 30 28
Meloidogyne_incognita_   (Southern root-knot nematode)   21 21
Meloidogyne_hapla_ 12 12
Onchocerca_volvulus_22 18 17
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   26 24
Caenorhabditis_japonica_ 24 23
Caenorhabditis_brenneri_ 28 26
Caenorhabditis_remanei_ 35 34
Caenorhabditis_elegans_76_235   (Roundworm)   57 56
Caenorhabditis_briggsae_2 26 25
Trichinella_spiralis_22 12 11
Hymenolepis_microstoma_ 19 18
Echinococcus_multilocularis_ 18 17
Echinococcus_granulosus_ 18 17
Taenia_solium_   (Pork tapeworm)   17 17
Schistosoma_mansoni_ 13 12
Mnemiopsis_leidyi   (Sea walnut)   13 13
Thelohanellus_kitauei 5 5
Acropora_digitifera_v1.0 18 18
Nematostella_vectensis_1.0   (Starlet sea anemone)   35 35
Hydra_vulgaris 21 21
Amphimedon_queenslandica 19 19
Trichoplax_adhaerens_ 15 15
Proterospongia_sp._ATCC_50818_ 18 18
Monosiga_brevicollis_ 14 14
Sphaeroforma_arctica_JP610_ 15 15
Capsaspora_owczarzaki_ATCC_30864_ 22 22
Conidiobolus_coronatus_NRRL28638_v1.0 16 16
Mortierella_verticillata_NRRL_6337_ 30 30
Phycomyces_blakesleeanus_ 47 47
Rhizopus_oryzae_RA_99-880_ 53 53
Mucor_circinelloides_ 54 54
Rhizomucor_miehei_CAU432_ 45 43
Malassezia_globosa_CBS_7966_ 16 16
Sporisorium_reilianum_22 15 15
Ustilago_maydis_ 14 14
Mixia_osmundae_IAM_14324_v1.0 12 12
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 13 13
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 12 12
Melampsora_laricis-populina_ 13 13
Rhodotorula_graminis_WP1_v1.0 14 14
Sporobolomyces_roseus_IAM_13481_ 7 7
Microbotryum_violaceum_22 20 20
Wallemia_sebi_v1.0 11 11
Sphaerobolus_stellatus_v1.0 13 13
Piloderma_croceum_F_1598_v1.0 15 15
Serpula_lacrymans_var._lacrymans_S7.9_ 11 11
Coniophora_puteana 13 13
Hydnomerulius_pinastri_v2.0 14 14
Paxillus_rubicundulus_Ve08.2h10_v1.0 14 14
Pisolithus_microcarpus_441_v1.0 14 14
Pisolithus_tinctorius_Marx_270_v1.0 11 11
Scleroderma_citrinum_Foug_A_v1.0 14 14
Coprinopsis_cinerea_okayama7_130_v3 15 15
Pleurotus_ostreatus_   (Oyster mushroom)   11 11
Amanita_thiersii_Skay4041_v1.0 12 12
Amanita_muscaria_Koide_v1.0   (Fly agaric)   15 15
Galerina_marginata_v1.0 17 17
Hebeloma_cylindrosporum_h7_v2.0 13 13
Laccaria_bicolor_S238N-H82_ 13 13
Agaricus_bisporus_var._bisporus_ 14 14
Schizophyllum_commune_ 16 16
Stereum_hirsutum_FP-91666_SS1__v1.0 14 14
Heterobasidion_annosum_ 12 12
Gloeophyllum_trabeumv1.0 13 13
Punctularia_strigosozonata_v1.0 16 16
Sebacina_vermifera_MAFF_305830_v1.0 13 13
Fomitiporia_mediterranea_v1.0 26 26
Tulasnella_calospora_AL13/4D_v1.0 12 12
Postia_placenta_ 17 17
Wolfiporia_cocos_MD-104_SS10__v1.0 12 12
Fomitopsis_pinicolav1.0 13 13
Fomitopsis_pinicola_FP-58527_SS1_v3.0 13 13
Phanerochaete_chrysosporium_RP-78_2.1 9 9
Dichomitus_squalens 11 11
Trametes_versicolor_v1.0 14 14
Tremella_mesenterica_   (Witches' butter)   15 15
Daldinia_eschscholzii_EC12_v1.0 22 22
Apiospora_montagnei_NRRL_25634_v1.0 32 32
Magnaporthe_poae_ATCC_64411_22 23 23
Magnaporthe_grisea_70-15_ 22 22
Podospora_anserina_ 21 21
Sporotrichum_thermophile_ATCC_42464_ 18 18
Thielavia_terrestris_NRRL_8126_ 19 19
Chaetomium_globosum_CBS_148.51_ 15 15
Neurospora_tetrasperma_ 20 20
Neurospora_discreta_FGSC_8579_ 17 17
Neurospora_crassa_OR74A_ 21 21
Cryphonectria_parasitica_   (Chestnut blight fungus)   20 20
Verticillium_albo-atrum_VaMs.102_ 14 14
Verticillium_dahliae_VdLs.17_ 26 26
Acremonium_alcalophilumv_1.0 18 18
Glomerella_graminicola_22 26 26
Fusarium_graminearum_ 26 26
Nectria_haematococca_mpVI_ 28 28
Fusarium_oxysporum_f._sp._lycopersici_4286_ 96 96
Fusarium_verticillioides_7600_ 27 27
Trichoderma_asperellum_CBS_433.97_v1.0 31 31
Trichoderma_atroviride_ 27 27
Trichoderma_citrinoviride_v1.0 25 25
Trichoderma_reesei_1.2 21 21
Trichoderma_virens_Gv29-8_ 26 26
Trichoderma_longibrachiatum_ATCC_18648_v1.0 21 21
Trichoderma_harzianum_CBS_226.95_v1.0 33 33
Amorphotheca_resinae_v1.0   (Creosote fungus)   22 22
Botrytis_cinerea_B05.10_ 19 19
Sclerotinia_sclerotiorum_ 21 21
Blumeria_graminis_22 11 11
Didymella_exigua_CBS_183.55_v1.0 23 23
Leptosphaeria_maculans_22 16 16
Setosphaeria_turcica_v1.0 26 26
Cochliobolus_miyabeanus_ATCC_44560_v1.0 25 25
Cochliobolus_victoriae_FI3_v1.0 29 29
Cochliobolus_carbonum_26-R-13_v1.0 25 25
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   17 17
Alternaria_brassicicola_ 21 21
Cochliobolus_lunatus_m118_v2.0 24 24
Pyrenophora_teres_f._teres_22 23 23
Pyrenophora_tritici-repentis_ 21 21
Stagonospora_nodorum_ 22 22
Mycosphaerella_graminicola_IPO323_ 15 15
Zasmidium_cellare_ATCC_36951_v1.0 38 38
Dothistroma_septosporum 18 18
Septoria_musiva_v1.0 21 21
Mycosphaerella_fijiensis_CIRAD86_ 17 17
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 19 19
Paracoccidioides_brasiliensis_Pb18_ 16 16
Coccidioides_posadasii_RMSCC_3488_ 16 16
Coccidioides_immitis_RS_ 20 20
Ajellomyces_dermatitidis_SLH14081_ 19 19
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 17 17
Microsporum_canis_CBS_113480_ 18 18
Trichophyton_equinum_CBS_127.97_ 18 18
Trichophyton_verrucosum_HKI_0517_ 17 17
Arthroderma_benhamiae_CBS_112371_ 17 17
Trichophyton_tonsurans_CBS_112818_ 17 17
Trichophyton_rubrum_CBS_118892_ 19 19
Uncinocarpus_reesii_1704_ 18 18
Aspergillus_zonatus_v1.0 24 24
Penicillium_chrysogenum_Wisconsin_54-1255_ 30 30
Penicillium_chrysogenum_v1.0 26 26
Aspergillus_acidus_v1.0 27 27
Aspergillus_fumigatus_Af293 21 21
Aspergillus_brasiliensis_v1.0 28 28
Aspergillus_nidulans_FGSC_A4_ 24 24
Aspergillus_sydowii_v1.0 34 34
Aspergillus_versicolor_v1.0 35 35
Aspergillus_glaucus 23 23
Aspergillus_carbonarius_ITEM_5010_ 22 22
Neosartorya_fischeri_NRRL_181_ 27 27
Aspergillus_terreus_NIH2624_ 22 22
Aspergillus_tubingensis_v1.0 24 24
Aspergillus_wentii_v1.0 24 24
Aspergillus_oryzae_RIB40_ 22 22
Aspergillus_niger_22 27 27
Aspergillus_niger_ATCC_1015_ 14 14
Aspergillus_flavus_NRRL3357_ 28 28
Aspergillus_clavatus_NRRL_1_ 28 28
Penicillium_marneffei_ATCC_18224_ 26 26
Tuber_melanosporum_Mel28_22 16 16
Tuber_melanosporum_Vittad_   (Perigord truffle)   33 33
Hansenula_polymorpha_v2.0 10 10
Dekkera_bruxellensis_CBS_2499_v2.0 7 7
Pichia_membranifaciensv1.0 9 9
Candida_tanzawaensis_NRRL_Y-17324__v1.0 10 10
Candida_dubliniensis_CD36_ 10 10
Candida_tropicalis_MYA-3404_ 10 10
Candida_parapsilosis_ 10 10
Candida_albicans_SC5314 10 10
Lodderomyces_elongisporus_NRRL_YB-4239_ 10 10
Babjeviella_inositovora_NRRL_Y-12698_v1.0 11 11
Pichia_stipitis_CBS_6054_ 11 11
Candida_guilliermondii_ATCC_6260_ 12 12
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 10 10
Debaromyces_hansenii 11 11
Wickerhamomyces_anomalus 11 11
Pichia_pastoris_GS115_ 12 12
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 8 8
Yarrowia_lipolytica_CLIB122 10 10
Candida_lusitaniae_ATCC_42720_ 10 10
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 10 10
Vanderwaltozyma_polyspora_DSM_70294_ 15 15
Candida_glabrata_CBS138 15 15
Kluyveromyces_thermotolerans_CBS_6340 12 12
Lachancea_kluyveri_ 12 12
Kluyveromyces_waltii 9 9
Ashbya_gossypii_ATCC_10895_ 9 9
Zygosaccharomyces_rouxii_ 11 11
Saccharomyces_mikatae_MIT 17 17
Saccharomyces_paradoxus_MIT 19 19
Saccharomyces_cerevisiae_76   (Baker's yeast)   18 18
Saccharomyces_bayanus_MIT 16 16
Kluyveromyces_lactis 13 13
Schizosaccharomyces_cryophilus_OY26_22 7 7
Schizosaccharomyces_octosporus_yFS286_ 7 7
Schizosaccharomyces_japonicus_yFS275_ 6 6
Schizosaccharomyces_pombe   (Fission yeast)   6 6
Catenaria_anguillulae_PL171_v1.0 16 16
Allomyces_macrogynus_ATCC_38327_ 41 41
Spizellomyces_punctatus_DAOM_BR117_ 23 23
Dictyostelium_discoideum 19 19
Dictyostelium_purpureum_ 11 11
Entamoeba_dispar_1.2 2 2
Entamoeba_invadens_1.2 1 1
Entamoeba_histolytica_1 4 4
Selaginella_moellendorffii_ 41 41
Pinus_taeda   (Loblolly pine)   29 28
Picea_abies   (Norway spruce)   40 40
Eucalyptus_grandis_v201   (Rose gum)   88 88
Theobroma_cacao_B97-61/B2_v1   (Cacao)   51 51
Gossypium_raimondii_v221 266 266
Citrus_clementina_v165 101 101
Citrus_sinensis_v154   (Sweet orange)   99 99
Thellungiella_halophila_v173 88 88
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   132 132
Capsella_rubella_v183 86 86
Arabidopsis_lyrata_   (Lyrate rockcress)   79 79
Arabidopsis_thaliana_10   (Thale cress)   125 125
Carica_papaya_   (Papaya)   43 43
Medicago_truncatula_   (Barrel medic)   120 119
Phaseolus_vulgaris_v186   (French bean)   96 96
Glycine_max_v109   (Soybean)   185 185
Cucumis_sativus_v122   (Cucumber)   117 117
Fragaria_vesca_   (Wild strawberry)   51 51
Malus_domestica_v196   (Apple)   115 114
Prunus_persica_v139   (Peach)   48 48
Linum_usitatissimum_v200   (Flax)   101 101
Manihot_esculenta_v147   (Cassava)   89 89
Populus_trichocarpa_v156   (Black cottonwood)   100 100
Vitis_vinifera_   (Wine grape)   47 47
Mimulus_guttatus_v140   (Spotted monkey flower)   62 62
Solanum_lycopersicum_v.2.3   (Tomato)   69 69
Solanum_tuberosum_   (Potato)   94 94
Actinidia_chinensis_Hongyang_ 82 82
Aquilegia_coerulea_v195 84 84
Triticum_urartu_22 62 62
Triticum_aestivum_22   (Bread wheat)   173 173
Aegilops_tauschii_22 64 64
Brachypodium_distachyon_   (Stiff brome)   92 92
Oryza_barthii_22   (African wild rice)   117 117
Oryza_meridionalis_22 107 107
Oryza_glumaepatula_22 111 111
Oryza_glaberrima   (African rice)   68 68
Oryza_punctata_22 125 124
Oryza_nivara_22 128 128
Oryza_brachyantha_22   (Malo sina)   80 80
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   135 135
Oryza_sativa_v193   (Rice)   135 135
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   101 101
Panicum_virgatum_v202   (Switchgrass)   182 182
Setaria_italica_v164   (Foxtail millet)   101 101
Zea_mays_subsp._mays_   (Maize)   178 178
Zea_mays_v181   (Maize)   201 201
Sorghum_bicolor_   (Sorghum)   86 86
Musa_balbisiana   (Balbis banana)   126 126
Musa_acuminata_22   (Wild Malaysian banana)   135 135
Amborella_trichopoda_22 36 36
Physcomitrella_patens 39 39
Coccomyxa_subellipsoidea_sp._C-169_v2 31 31
Asterochloris_sp._Cgr/DA1pho_v1.0 11 11
Chlorella_variabilis_sp._NC64A_ 13 13
Chlorella_vulgaris_ 29 29
Volvox_carteri_f._nagariensis_ 20 20
Volvox_carteri_v199 15 15
Chlamydomonas_reinhardtii_4.0 18 18
Ostreococcus_sp._RCC809_ 8 8
Ostreococcus_lucimarinus_CCE9901_ 10 10
Ostreococcus_tauri_ 6 6
Bathycoccus_prasinos_ 5 5
Micromonas_sp._RCC299_ 11 11
Micromonas_pusilla_CCMP1545_v3.0 10 10
Cyanidioschyzon_merolae_strain_10D_22 3 3
Cyanidioschyzon_merolae 3 3
Porphyridium_purpureum_02_2012 21 21
Thecamonas_trahens_ATCC_50062_ 5 5
Bigelowiella_natans_CCMP2755_22 8 8
Giardia_lamblia_2.3 1 1
Cyanophora_paradoxa_ 16 16
Ectocarpus_siliculosus 16 15
Aureococcus_anophagefferens_ 4 4
Albugo_laibachii_22 16 15
Pythium_iwayamai_DAOM_BR242034_22 14 14
Pythium_arrhenomanes_ATCC_12531_22 17 16
Pythium_ultimum_v1.7-2 24 22
Pythium_aphanidermatum_DAOM_BR444_22 16 16
Pythium_irregulare_DAOM_BR486_22 21 20
Pythium_vexans_DAOM_BR484_22 21 19
Phytophthora_ramorum_1.1   (Sudden oak death agent)   23 22
Phytophthora_sojae_1.1 22 20
Phytophthora_infestans_T30-4_ 20 19
Phytophthora_capsici_ 18 17
Hyaloperonospora_arabidopsidis_22 19 18
Phaeodactylum_tricornutumCCAP_1055/1 18 16
Fragilariopsis_cylindrus 31 29
Thalassiosira_pseudonana_CCMP1335 17 16
Perkinsus_marinus_ATCC_50983_ 1 1
Paramecium_tetraurelia_ 61 61
Tetrahymena_thermophila_SB210_1_ 9 9
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Naegleria_gruberi_ 3 3
Trichomonas_vaginalis_ 3 3
Guillardia_theta_CCMP2712_v1.0_ 15 15
Emiliania_huxleyi_CCMP1516_ 6 6
Butyrivibrio_proteoclasticus_B316 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   98 98
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   49 49
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   25 25
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   20 20
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   45 44
Cryptococcus_neoformans_var._grubii_H99_ 17 17
Cryptococcus_neoformans_B-3501A_ 17 17
Cryptococcus_neoformans_JEC21_ 16 16
Paracoccidioides_brasiliensis_Pb01_ 17 17
Paracoccidioides_brasiliensis_Pb03_ 18 18
Coccidioides_posadasii_str._Silveira_ 17 17
Coccidioides_immitis_RMSCC_3703_ 16 16
Coccidioides_immitis_RMSCC_2394_ 18 18
Coccidioides_immitis_H538.4_ 17 17
Ajellomyces_dermatitidis_ER-3_ 18 18
Histoplasma_capsulatum_H143 13 13
Histoplasma_capsulatum_H88 17 17
Histoplasma_capsulatum_G186AR 19 19
Aspergillus_fumigatus_A1163_ 24 24
Candida_albicans_WO-1_ 10 10
Saccharomyces_cerevisiae_UC5 16 16
Saccharomyces_cerevisiae_PW5 16 16
Saccharomyces_cerevisiae_FL100 8 8
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CLIB324 8 8
Saccharomyces_cerevisiae_CBS7960 14 14
Saccharomyces_cerevisiae_YJM269 13 13
Saccharomyces_cerevisiae_T7 18 18
Saccharomyces_cerevisiae_FostersB 12 12
Saccharomyces_cerevisiae_FostersO 9 9
Saccharomyces_cerevisiae_VL3 15 15
Saccharomyces_cerevisiae_Vin13 15 15
Saccharomyces_cerevisiae_LalvinQA23 15 15
Saccharomyces_cerevisiae_AWRI796 14 14
Saccharomyces_cerevisiae_Sigma1278b 17 17
Saccharomyces_cerevisiae_W303 18 18
Saccharomyces_cerevisiae_JAY291 17 17
Saccharomyces_cerevisiae_AWRI1631 10 10
Saccharomyces_cerevisiae_YPS163 7 7
Saccharomyces_cerevisiae_M22 4 4
Saccharomyces_cerevisiae_T73 6 6
Saccharomyces_cerevisiae_CLIB215 13 13
Saccharomyces_cerevisiae_Y10 8 8
Saccharomyces_cerevisiae_YJM789_ 18 18
Saccharomyces_cerevisiae_YJM789 18 18
Saccharomyces_cerevisiae_RM11-1a 18 18
Saccharomyces_cerevisiae_RM11-1a_ 18 18
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   18 18
Schizosaccharomyces_pombe_972h-_ 6 6
Batrachochytrium_dendrobatidis_JEL423_ 12 12
Batrachochytrium_dendrobatidis_JAM81_ 14 14
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   51 51
Hordeum_vulgare_22   (Domesticated barley)   146 146
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   94 94

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   56 56
Pan_troglodytes_69_2.1.4   (Chimpanzee)   49 49
Gorilla_gorilla_69_3.1   (Western gorilla)   53 53
Pongo_abelii_69_2   (Sumatran orangutan)   46 46
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   44 44
Macaca_mulatta_69_1   (Rhesus monkey)   48 48
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   48 48
Otolemur_garnettii_69_3   (Small-eared galago)   48 48
Microcebus_murinus_69_1   (Gray mouse lemur)   34 34
Rattus_norvegicus_69_3.4   (Norway rat)   50 50
Mus_musculus_69_38   (House mouse)   52 52
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   30 30
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   44 44
Cavia_porcellus_69_3   (Domestic guinea pig)   50 50
Oryctolagus_cuniculus_69_2   (Rabbit)   41 41
Ochotona_princeps_69   (American pika)   30 30
Tupaia_belangeri_69   (Northern tree shrew)   30 30
Sus_scrofa_69_10.2   (Pig)   42 42
Bos_taurus_69_3.1   (Cattle)   48 48
Vicugna_pacos_69_1   (Alpaca)   20 20
Tursiops_truncatus_69_1   (Bottlenose dolphin)   38 38
Mustela_putorius_furo_69_1.0   (Domestic ferret)   50 50
Ailuropoda_melanoleuca_69_1   (Giant panda)   48 48
Canis_familiaris_69_3.1   (Dog)   51 51
Felis_catus_69   (Domestic cat)   24 24
Equus_caballus_69_2   (Horse)   42 42
Myotis_lucifugus_69_2.0   (Little brown bat)   46 46
Pteropus_vampyrus_69_1   (Large flying fox)   44 44
Sorex_araneus_69_1   (European shrew)   22 22
Erinaceus_europaeus_69   (Western European hedgehog)   21 21
Procavia_capensis_69_1   (Cape rock hyrax)   32 32
Loxodonta_africana_69_3   (African savanna elephant)   46 46
Echinops_telfairi_69   (Small Madagascar hedgehog)   22 22
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   31 31
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   21 21
Macropus_eugenii_69_1.0   (Tammar wallaby)   30 30
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   40 40
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   43 43
Ornithorhynchus_anatinus_69_5   (Platypus)   35 35
Petromyzon_marinus_69_7.0   (Sea lamprey)   20 20
Meleagris_gallopavo_69_2   (Turkey)   30 30
Gallus_gallus_69_2   (Chicken)   35 35
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   38 38
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   40 40
Anolis_carolinensis_69_2.0   (Green anole)   41 41
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   48 48
Latimeria_chalumnae_69_1   (Coelacanth)   49 49
Gadus_morhua_69_1   (Atlantic cod)   54 54
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   60 60
Takifugu_rubripes_69_4   (Torafugu)   59 58
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   57 57
Oryzias_latipes_69_1   (Japanese medaka)   54 54
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   68 68
Oreochromis_niloticus_69_1.0   (Nile tilapia)   71 71
Danio_rerio_69_9   (Zebrafish)   75 75
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   17 17
Ciona_intestinalis_69   (Vase tunicate)   22 22
Drosophila_melanogaster_69_5   (Fruit fly)   17 17
Caenorhabditis_elegans_69_215   (Roundworm)   24 23
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   18 18
Arabidopsis_thaliana_10   (Thale cress)   74 74

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   198 198
Homo_sapiens__(NCBI_version)   (Human)   100 100
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   52 52
Heliconius_numata__(Incomplete) 8 8
Loa_loa_v3.3_(Request)   (Eye worm)   16 16
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   14 14
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   16 15
Moniliophthora_perniciosa_FA553__(Genome_survey) 7 7
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   3 3
Lotus_japonicus__(Early_assembly) 45 45
Malus_x_domestica_(Duplicate)   (Apple)   115 114
Ricinus_communis__(Early_assembly)   (Castor bean)   51 51
Nicotiana_benthamiana_0.4.4_(Early_draft) 124 122
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   67 67
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   69 69
Phoenix_dactylifera__(Early_draft)   (Date palm)   38 38
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 556 499
Protein_Data_Bank_(all_PDB_sequenc) 737 662
STRING_v9.0.5_(STRING) 3177 3164
TargetDB__(Targets) 90 89
Uniprot_2018_03_genome 43418 43270
NCBI_2017_08_genome 45288 45217
UniProt__viral_sequences_(Viral) 79 79
PDB_chains_(SCOP_1.75)_(PDB) 97 97
NCBI_viral_sequences_(Viral) 9 9
Protozoadb_2010_08_(Protozoadb) 23 23

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