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Domain combinations for Virus ectodomain superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Virus ectodomain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   9 9
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_76_3.1   (Western gorilla)   1 1
Pongo_abelii_76_2   (Sumatran orangutan)   2 2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3 3
Papio_anubis_76   (Olive baboon)   3 3
Macaca_mulatta_76_1   (Rhesus monkey)   3 3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2 2
Rattus_norvegicus_76_5.0   (Norway rat)   1 1
Mus_musculus_76_38   (House mouse)   5 5
Cavia_porcellus_76_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_76_2   (Rabbit)   3 3
Sus_scrofa_76_10.2   (Pig)   15 15
Ovis_aries_76_3.1   (Sheep)   30 30
Mustela_putorius_furo_76_1.0   (Domestic ferret)   6 6
Canis_familiaris_76_3.1   (Dog)   2 2
Felis_catus_76_6.2   (Domestic cat)   19 19
Echinops_telfairi_76   (Small Madagascar hedgehog)   1 1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   99 99
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1 1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   25 25
Meleagris_gallopavo_76_2   (Turkey)   3 3
Anas_platyrhynchos_76_1.0   (Mallard)   4 4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3 3
Anolis_carolinensis_76_2.0   (Green anole)   18 18
Lepisosteus_oculatus_76   (Spotted gar)   3 3
Takifugu_rubripes_76_4   (Torafugu)   13 13
Oryzias_latipes_76_1   (Japanese medaka)   2 2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   4 4
Poecilia_formosa_76   (Amazon molly)   2 2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2 2
Astyanax_mexicanus_76   (Mexican tetra)   2 2
Danio_rerio_76_9   (Zebrafish)   2 2
Mnemiopsis_leidyi   (Sea walnut)   2 2
Trypanosoma_congolense_2.4 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   4 4

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   4 4
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Pongo_abelii_69_2   (Sumatran orangutan)   2 2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3 3
Macaca_mulatta_69_1   (Rhesus monkey)   3 3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2 2
Mus_musculus_69_38   (House mouse)   5 5
Cavia_porcellus_69_3   (Domestic guinea pig)   1 1
Sus_scrofa_69_10.2   (Pig)   14 14
Mustela_putorius_furo_69_1.0   (Domestic ferret)   6 6
Canis_familiaris_69_3.1   (Dog)   2 2
Echinops_telfairi_69   (Small Madagascar hedgehog)   1 1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1 1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   25 25
Meleagris_gallopavo_69_2   (Turkey)   3 3
Gallus_gallus_69_2   (Chicken)   4 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3 3
Anolis_carolinensis_69_2.0   (Green anole)   8 8
Takifugu_rubripes_69_4   (Torafugu)   13 13
Oryzias_latipes_69_1   (Japanese medaka)   2 2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   4 4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2 2
Danio_rerio_69_9   (Zebrafish)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   10 10
Homo_sapiens__(NCBI_version)   (Human)   8 8
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   5 5
Lotus_japonicus__(Early_assembly) 1 1
Uniprot_2018_03_genome 96739 95383
TargetDB__(Targets) 2 2
PDB_chains_(SCOP_1.75)_(PDB) 36 36
STRING_v9.0.5_(STRING) 40 40
NCBI_viral_sequences_(Viral) 87 80
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 740 649
Protein_Data_Bank_(all_PDB_sequenc) 872 708
NCBI_2017_08_genome 1176 1167
UniProt__viral_sequences_(Viral) 29028 28845

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