SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Variant surface glycoprotein (N-terminal domain) superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Variant surface glycoprotein (N-terminal domain) domain in that genome.

Complete genomes
Genome     Number   Proteins
Octopus_bimaculoides_280 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Trypanosoma_vivax_ 206 206
Trypanosoma_congolense_2.4 122 119
Trypanosoma_brucei_gambiense_v4.1 28 27
Trypanosoma_brucei_TREU927_v4.1 337 336

Strains
Genome     Number   Proteins
Trypanosoma_brucei_Lister_427_v4.1 148 138

Others
Genome     Number   Proteins
Protein_Data_Bank_(all_PDB_sequenc) 10 10
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 16 12
Protozoadb_2010_08_(Protozoadb) 85 85
STRING_v9.0.5_(STRING) 86 86
NCBI_2017_08_genome 121 121
Uniprot_2018_03_genome 4133 4124
PDB_chains_(SCOP_1.75)_(PDB) 2 2
TargetDB__(Targets) 8 8

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