SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Nicotinic receptor ligand binding domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Nicotinic receptor ligand binding domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   170 168
Pan_troglodytes_76_2.1.4   (Chimpanzee)   45 44
Gorilla_gorilla_76_3.1   (Western gorilla)   58 56
Pongo_abelii_76_2   (Sumatran orangutan)   47 46
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   50 49
Papio_anubis_76   (Olive baboon)   46 46
Macaca_mulatta_76_1   (Rhesus monkey)   64 63
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   103 102
Otolemur_garnettii_76_3   (Small-eared galago)   49 49
Microcebus_murinus_76_1   (Gray mouse lemur)   47 44
Rattus_norvegicus_76_5.0   (Norway rat)   47 47
Mus_musculus_76_38   (House mouse)   69 68
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   45 41
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   45 45
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   47 46
Cavia_porcellus_76_3   (Domestic guinea pig)   44 44
Oryctolagus_cuniculus_76_2   (Rabbit)   47 47
Ochotona_princeps_76   (American pika)   46 41
Tupaia_belangeri_76   (Northern tree shrew)   39 35
Sus_scrofa_76_10.2   (Pig)   53 52
Bos_taurus_76_3.1   (Cattle)   52 52
Ovis_aries_76_3.1   (Sheep)   51 51
Vicugna_pacos_76_1   (Alpaca)   34 32
Tursiops_truncatus_76_1   (Bottlenose dolphin)   49 45
Mustela_putorius_furo_76_1.0   (Domestic ferret)   47 47
Ailuropoda_melanoleuca_76_1   (Giant panda)   50 50
Canis_familiaris_76_3.1   (Dog)   58 58
Felis_catus_76_6.2   (Domestic cat)   48 48
Equus_caballus_76_2   (Horse)   46 46
Myotis_lucifugus_76_2.0   (Little brown bat)   48 47
Pteropus_vampyrus_76_1   (Large flying fox)   43 42
Sorex_araneus_76_1   (European shrew)   36 30
Erinaceus_europaeus_76   (Western European hedgehog)   38 36
Procavia_capensis_76_1   (Cape rock hyrax)   39 37
Loxodonta_africana_76_3   (African savanna elephant)   60 59
Echinops_telfairi_76   (Small Madagascar hedgehog)   43 41
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   54 53
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   31 28
Macropus_eugenii_76_1.0   (Tammar wallaby)   43 39
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   53 53
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   51 49
Ornithorhynchus_anatinus_76_5   (Platypus)   47 47
Saccoglossus_kowalevskii_v3.0 144 143
Petromyzon_marinus_76_7.0   (Sea lamprey)   29 29
Meleagris_gallopavo_76_2   (Turkey)   47 47
Gallus_gallus_76_4   (Chicken)   43 43
Anas_platyrhynchos_76_1.0   (Mallard)   39 39
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   41 41
Ficedula_albicollis_76_1.0   (Collared flycatcher)   43 43
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   55 55
Anolis_carolinensis_76_2.0   (Green anole)   40 40
Xenopus_laevis_   (African clawed frog)   33 33
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   53 53
Latimeria_chalumnae_76_1   (Coelacanth)   54 53
Lepisosteus_oculatus_76   (Spotted gar)   63 61
Gadus_morhua_76_1   (Atlantic cod)   79 74
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   107 105
Takifugu_rubripes_76_4   (Torafugu)   405 390
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   106 106
Oryzias_latipes_76_1   (Japanese medaka)   89 89
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   76 76
Poecilia_formosa_76   (Amazon molly)   80 74
Oreochromis_niloticus_76_1.0   (Nile tilapia)   99 99
Astyanax_mexicanus_76   (Mexican tetra)   67 65
Danio_rerio_76_9   (Zebrafish)   113 113
Oikopleura_dioica 34 34
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   40 38
Ciona_intestinalis_76   (Vase tunicate)   18 18
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   75 70
Adineta_vaga 107 106
Octopus_bimaculoides_280 85 84
Crassostrea_gigas_22   (Pacific oyster)   166 151
Lottia_gigantea_   (Owl limpet)   87 87
Helobdella_robusta_ 85 84
Capitella_sp._I_ 170 167
Danaus_plexippus_OGS1.0   (Monarch butterfly)   30 30
Heliconius_melpomene_   (Postman butterfly)   22 20
Bombyx_mori_   (Domestic silkworm)   26 26
Nasonia_vitripennis_   (Jewel wasp)   23 23
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   71 71
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   24 23
Linepithema_humile_v1.1   (Argentine ant)   31 30
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   35 33
Solenopsis_invicta_v.2.2.3   (Red fire ant)   27 25
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   26 23
Atta_cephalotes_v1.1 32 29
Camponotus_floridanus_v3.3   (Florida carpenter ant)   28 24
Lucilia_cuprina   (Australian sheep blowfly)   21 21
Drosophila_grimshawi_1.3 24 23
Drosophila_willistoni_1.3 24 23
Drosophila_pseudoobscura_2.13 23 22
Drosophila_persimilis_1.3 24 23
Drosophila_suzukii 26 23
Drosophila_yakuba_1.3 25 23
Drosophila_simulans_1.3 24 23
Drosophila_sechellia_1.3 24 23
Drosophila_melanogaster_76_5   (Fruit fly)   66 65
Drosophila_erecta_1.3 24 23
Drosophila_ananassae_1.3 23 22
Drosophila_virilis_1.2 24 23
Drosophila_mojavensis_1.3 24 23
Megaselia_scalaris_22 15 15
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   23 22
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   38 36
Anopheles_darlingi_22   (American malaria mosquito)   19 18
Anopheles_gambiae_49_3j   (African malaria mosquito)   28 28
Tribolium_castaneum_3.0   (Red flour beetle)   27 27
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   21 21
Acyrthosiphon_pisum_   (Pea aphid)   24 24
Rhodnius_prolixus_22 27 26
Daphnia_pulex_   (Common water flea)   30 30
Strigamia_maritima_22 56 52
Sarcoptes_scabiei 20 19
Tetranychus_urticae_   (Two-spotted spider mite)   38 37
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   38 36
Pristionchus_pacificus_ 162 161
Meloidogyne_incognita_   (Southern root-knot nematode)   50 50
Meloidogyne_hapla_ 23 23
Onchocerca_volvulus_22 53 53
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   61 60
Caenorhabditis_japonica_ 86 85
Caenorhabditis_brenneri_ 124 122
Caenorhabditis_remanei_ 118 114
Caenorhabditis_elegans_76_235   (Roundworm)   139 139
Caenorhabditis_briggsae_2 104 102
Trichinella_spiralis_22 32 31
Hymenolepis_microstoma_ 14 12
Echinococcus_multilocularis_ 17 17
Echinococcus_granulosus_ 17 17
Taenia_solium_   (Pork tapeworm)   16 16
Schistosoma_mansoni_ 21 21
Acropora_digitifera_v1.0 58 56
Nematostella_vectensis_1.0   (Starlet sea anemone)   106 105
Hydra_vulgaris 25 25
Monosiga_brevicollis_ 3 3
Sphaeroforma_arctica_JP610_ 2 2
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 4 4
Chlamydomonas_reinhardtii_4.0 2 2
Micromonas_sp._RCC299_ 1 1
Porphyridium_purpureum_02_2012 2 2
Bigelowiella_natans_CCMP2755_22 4 4
Cyanophora_paradoxa_ 7 7
Aureococcus_anophagefferens_ 14 14
Fragilariopsis_cylindrus 5 5
Symbiodinium_minutum_clade_B1_v1.2 11 11
Guillardia_theta_CCMP2712_v1.0_ 1 1
Emiliania_huxleyi_CCMP1516_ 24 24
Synechococcus_sp._PCC_7502 1 1
Synechococcus_sp._PCC_6312 1 1
Cyanothece_sp._PCC_8802 1 1
Gloeobacter_violaceus_PCC_7421 1 1
Nostoc_punctiforme_PCC_73102 2 2
Haliscomenobacter_hydrossis_DSM_1100 1 1
Niastella_koreensis_GR20-10 2 2
Cytophaga_hutchinsonii_ATCC_33406 1 1
Planctomyces_brasiliensis_DSM_5305 1 1
Coraliomargarita_akajimensis_DSM_45221 1 1
Magnetospirillum_magneticum_AMB-1 1 1
Azospirillum_sp._B510 2 2
Azospirillum_brasilense_Sp245 1 1
Rhodopseudomonas_palustris_BisA53 1 1
Nitrosococcus_watsonii_C-113 1 1
Dickeya_dadantii_Ech703 1 1
Dickeya_zeae_Ech1591 1 1
Francisella_sp._TX077308 1 1
Francisella_philomiragia_subsp._philomiragia_ATCC_25017 1 1
Francisella_tularensis_subsp._tularensis_WY96-3418 1 1
Francisella_cf._novicida_3523 1 1
Francisella_novicida_U112 1 1
Methanosphaerula_palustris_E1-9c 1 1
Methanoregula_boonei_6A8 2 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   58 56
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   53 52
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   34 34
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   84 83
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   125 125
Chroococcidiopsis_thermalis_PCC_7203 1 1
Crinalium_epipsammum_PCC_9333 1 1
Oscillatoria_nigro-viridis_PCC_7112 1 1
Cyanothece_sp._PCC_7425 1 1
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 1 1
Saccharothrix_espanaensis_DSM_44229 1 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1 1
Rhodopseudomonas_palustris_DX-1 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_HaA2 1 1
Rhodopseudomonas_palustris_BisB5 1 1
Rhodopseudomonas_palustris_BisB18 1 1
Rhodopseudomonas_palustris_CGA009 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Dickeya_dadantii_Ech586 1 1
Dickeya_dadantii_3937 1 1
Francisella_tularensis_subsp._mediasiatica_FSC147 1 1
Francisella_tularensis_subsp._holarctica_F92 1 1
Francisella_tularensis_subsp._holarctica_FTNF002-00 1 1
Francisella_tularensis_subsp._holarctica_OSU18 1 1
Francisella_tularensis_subsp._holarctica_LVS 1 1
Francisella_tularensis_subsp._holarctica_FSC200 1 1
Francisella_tularensis_subsp._tularensis_TIGB03 1 1
Francisella_tularensis_subsp._tularensis_TI0902 1 1
Francisella_tularensis_subsp._tularensis_NE061598 1 1
Francisella_tularensis_subsp._tularensis_FSC198 1 1
Francisella_tularensis_subsp._tularensis_SCHU_S4 1 1
Francisella_cf._novicida_Fx1 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   49 48
Pan_troglodytes_69_2.1.4   (Chimpanzee)   43 42
Gorilla_gorilla_69_3.1   (Western gorilla)   45 43
Pongo_abelii_69_2   (Sumatran orangutan)   45 44
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   45 44
Macaca_mulatta_69_1   (Rhesus monkey)   47 46
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   49 48
Otolemur_garnettii_69_3   (Small-eared galago)   46 46
Microcebus_murinus_69_1   (Gray mouse lemur)   47 44
Rattus_norvegicus_69_3.4   (Norway rat)   44 43
Mus_musculus_69_38   (House mouse)   43 43
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   45 41
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   45 45
Cavia_porcellus_69_3   (Domestic guinea pig)   42 42
Oryctolagus_cuniculus_69_2   (Rabbit)   44 44
Ochotona_princeps_69   (American pika)   46 41
Tupaia_belangeri_69   (Northern tree shrew)   39 35
Sus_scrofa_69_10.2   (Pig)   48 47
Bos_taurus_69_3.1   (Cattle)   45 45
Vicugna_pacos_69_1   (Alpaca)   34 32
Tursiops_truncatus_69_1   (Bottlenose dolphin)   49 45
Mustela_putorius_furo_69_1.0   (Domestic ferret)   46 46
Ailuropoda_melanoleuca_69_1   (Giant panda)   46 46
Canis_familiaris_69_3.1   (Dog)   46 46
Felis_catus_69   (Domestic cat)   41 36
Equus_caballus_69_2   (Horse)   45 45
Myotis_lucifugus_69_2.0   (Little brown bat)   43 43
Pteropus_vampyrus_69_1   (Large flying fox)   43 42
Sorex_araneus_69_1   (European shrew)   36 30
Erinaceus_europaeus_69   (Western European hedgehog)   38 36
Procavia_capensis_69_1   (Cape rock hyrax)   39 37
Loxodonta_africana_69_3   (African savanna elephant)   47 46
Echinops_telfairi_69   (Small Madagascar hedgehog)   43 41
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   42 36
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   31 28
Macropus_eugenii_69_1.0   (Tammar wallaby)   43 39
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   43 43
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   48 46
Ornithorhynchus_anatinus_69_5   (Platypus)   43 43
Petromyzon_marinus_69_7.0   (Sea lamprey)   28 28
Meleagris_gallopavo_69_2   (Turkey)   40 40
Gallus_gallus_69_2   (Chicken)   41 41
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   41 41
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   43 43
Anolis_carolinensis_69_2.0   (Green anole)   41 40
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   48 48
Latimeria_chalumnae_69_1   (Coelacanth)   46 45
Gadus_morhua_69_1   (Atlantic cod)   73 68
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   73 71
Takifugu_rubripes_69_4   (Torafugu)   76 67
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   71 71
Oryzias_latipes_69_1   (Japanese medaka)   66 66
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   75 75
Oreochromis_niloticus_69_1.0   (Nile tilapia)   72 72
Danio_rerio_69_9   (Zebrafish)   75 75
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   13 12
Ciona_intestinalis_69   (Vase tunicate)   17 17
Drosophila_melanogaster_69_5   (Fruit fly)   24 24
Caenorhabditis_elegans_69_215   (Roundworm)   103 103

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   169 167
Homo_sapiens__(NCBI_version)   (Human)   79 78
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   42 42
Loa_loa_v3.3_(Request)   (Eye worm)   50 50
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   62 61
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   32 31
NCBI_plasmid_sequences_(Plasmids) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 2021 2021
STRING_v9.0.5_(STRING) 2735 2664
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3509 3509
Uniprot_2018_03_genome 24700 24087
NCBI_2017_08_genome 28760 28315
PDB_chains_(SCOP_1.75)_(PDB) 4 4
TargetDB__(Targets) 67 67

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