SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Tudor/PWWP/MBT superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Tudor/PWWP/MBT domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   465 315
Pan_troglodytes_76_2.1.4   (Chimpanzee)   111 63
Gorilla_gorilla_76_3.1   (Western gorilla)   163 91
Pongo_abelii_76_2   (Sumatran orangutan)   102 66
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   110 65
Papio_anubis_76   (Olive baboon)   126 74
Macaca_mulatta_76_1   (Rhesus monkey)   203 124
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   287 181
Otolemur_garnettii_76_3   (Small-eared galago)   121 66
Microcebus_murinus_76_1   (Gray mouse lemur)   86 51
Rattus_norvegicus_76_5.0   (Norway rat)   131 73
Mus_musculus_76_38   (House mouse)   312 194
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   96 57
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   129 73
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   114 69
Cavia_porcellus_76_3   (Domestic guinea pig)   107 62
Oryctolagus_cuniculus_76_2   (Rabbit)   121 69
Ochotona_princeps_76   (American pika)   92 54
Tupaia_belangeri_76   (Northern tree shrew)   89 50
Sus_scrofa_76_10.2   (Pig)   120 77
Bos_taurus_76_3.1   (Cattle)   113 68
Ovis_aries_76_3.1   (Sheep)   135 79
Vicugna_pacos_76_1   (Alpaca)   67 39
Tursiops_truncatus_76_1   (Bottlenose dolphin)   112 61
Mustela_putorius_furo_76_1.0   (Domestic ferret)   117 64
Ailuropoda_melanoleuca_76_1   (Giant panda)   127 75
Canis_familiaris_76_3.1   (Dog)   167 91
Felis_catus_76_6.2   (Domestic cat)   118 67
Equus_caballus_76_2   (Horse)   115 72
Myotis_lucifugus_76_2.0   (Little brown bat)   114 68
Pteropus_vampyrus_76_1   (Large flying fox)   102 58
Sorex_araneus_76_1   (European shrew)   85 49
Erinaceus_europaeus_76   (Western European hedgehog)   82 48
Procavia_capensis_76_1   (Cape rock hyrax)   87 52
Loxodonta_africana_76_3   (African savanna elephant)   157 92
Echinops_telfairi_76   (Small Madagascar hedgehog)   89 57
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   116 73
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   77 45
Macropus_eugenii_76_1.0   (Tammar wallaby)   91 52
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   143 78
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   113 64
Ornithorhynchus_anatinus_76_5   (Platypus)   105 70
Saccoglossus_kowalevskii_v3.0 125 74
Petromyzon_marinus_76_7.0   (Sea lamprey)   65 39
Meleagris_gallopavo_76_2   (Turkey)   121 63
Gallus_gallus_76_4   (Chicken)   111 63
Anas_platyrhynchos_76_1.0   (Mallard)   118 61
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   106 61
Ficedula_albicollis_76_1.0   (Collared flycatcher)   104 58
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   125 66
Anolis_carolinensis_76_2.0   (Green anole)   113 62
Xenopus_laevis_   (African clawed frog)   139 85
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   130 77
Latimeria_chalumnae_76_1   (Coelacanth)   134 77
Lepisosteus_oculatus_76   (Spotted gar)   162 95
Gadus_morhua_76_1   (Atlantic cod)   109 66
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   126 71
Takifugu_rubripes_76_4   (Torafugu)   365 215
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   126 74
Oryzias_latipes_76_1   (Japanese medaka)   109 64
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   122 67
Poecilia_formosa_76   (Amazon molly)   129 71
Oreochromis_niloticus_76_1.0   (Nile tilapia)   191 98
Astyanax_mexicanus_76   (Mexican tetra)   152 82
Danio_rerio_76_9   (Zebrafish)   271 148
Oikopleura_dioica 39 28
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   49 39
Ciona_intestinalis_76   (Vase tunicate)   38 31
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   65 44
Adineta_vaga 138 96
Octopus_bimaculoides_280 113 80
Crassostrea_gigas_22   (Pacific oyster)   82 41
Lottia_gigantea_   (Owl limpet)   85 44
Helobdella_robusta_ 53 37
Capitella_sp._I_ 80 42
Danaus_plexippus_OGS1.0   (Monarch butterfly)   63 35
Heliconius_melpomene_   (Postman butterfly)   63 35
Bombyx_mori_   (Domestic silkworm)   48 28
Nasonia_vitripennis_   (Jewel wasp)   33 22
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   66 42
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   68 41
Linepithema_humile_v1.1   (Argentine ant)   54 36
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   58 32
Solenopsis_invicta_v.2.2.3   (Red fire ant)   70 39
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   66 37
Atta_cephalotes_v1.1 56 36
Camponotus_floridanus_v3.3   (Florida carpenter ant)   66 37
Lucilia_cuprina   (Australian sheep blowfly)   54 28
Drosophila_grimshawi_1.3 59 37
Drosophila_willistoni_1.3 63 37
Drosophila_pseudoobscura_2.13 67 40
Drosophila_persimilis_1.3 61 36
Drosophila_suzukii 56 33
Drosophila_yakuba_1.3 56 32
Drosophila_simulans_1.3 50 31
Drosophila_sechellia_1.3 60 35
Drosophila_melanogaster_76_5   (Fruit fly)   103 61
Drosophila_erecta_1.3 56 33
Drosophila_ananassae_1.3 57 32
Drosophila_virilis_1.2 60 35
Drosophila_mojavensis_1.3 56 33
Megaselia_scalaris_22 12 11
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   57 34
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   62 42
Anopheles_darlingi_22   (American malaria mosquito)   47 31
Anopheles_gambiae_49_3j   (African malaria mosquito)   49 31
Tribolium_castaneum_3.0   (Red flour beetle)   59 33
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   49 30
Acyrthosiphon_pisum_   (Pea aphid)   69 37
Rhodnius_prolixus_22 51 33
Daphnia_pulex_   (Common water flea)   145 73
Strigamia_maritima_22 67 37
Sarcoptes_scabiei 24 18
Tetranychus_urticae_   (Two-spotted spider mite)   56 39
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   55 38
Pristionchus_pacificus_ 22 14
Meloidogyne_incognita_   (Southern root-knot nematode)   14 14
Meloidogyne_hapla_ 9 6
Onchocerca_volvulus_22 35 24
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   49 36
Caenorhabditis_japonica_ 20 15
Caenorhabditis_brenneri_ 33 23
Caenorhabditis_remanei_ 33 20
Caenorhabditis_elegans_76_235   (Roundworm)   41 23
Caenorhabditis_briggsae_2 37 20
Trichinella_spiralis_22 19 19
Hymenolepis_microstoma_ 22 18
Echinococcus_multilocularis_ 20 14
Echinococcus_granulosus_ 20 14
Taenia_solium_   (Pork tapeworm)   20 15
Schistosoma_mansoni_ 29 20
Mnemiopsis_leidyi   (Sea walnut)   51 33
Thelohanellus_kitauei 3 2
Acropora_digitifera_v1.0 63 42
Nematostella_vectensis_1.0   (Starlet sea anemone)   78 39
Hydra_vulgaris 53 32
Amphimedon_queenslandica 58 34
Trichoplax_adhaerens_ 27 20
Proterospongia_sp._ATCC_50818_ 13 11
Monosiga_brevicollis_ 15 14
Sphaeroforma_arctica_JP610_ 6 6
Capsaspora_owczarzaki_ATCC_30864_ 15 13
Conidiobolus_coronatus_NRRL28638_v1.0 4 4
Mortierella_verticillata_NRRL_6337_ 9 8
Phycomyces_blakesleeanus_ 5 5
Rhizopus_oryzae_RA_99-880_ 6 6
Mucor_circinelloides_ 6 6
Rhizomucor_miehei_CAU432_ 5 5
Malassezia_globosa_CBS_7966_ 4 4
Sporisorium_reilianum_22 4 4
Ustilago_maydis_ 3 3
Mixia_osmundae_IAM_14324_v1.0 4 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 5 5
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 5 5
Melampsora_laricis-populina_ 4 4
Rhodotorula_graminis_WP1_v1.0 5 5
Sporobolomyces_roseus_IAM_13481_ 5 5
Microbotryum_violaceum_22 5 5
Wallemia_sebi_v1.0 4 4
Sphaerobolus_stellatus_v1.0 5 5
Piloderma_croceum_F_1598_v1.0 6 6
Serpula_lacrymans_var._lacrymans_S7.9_ 3 3
Coniophora_puteana 4 4
Hydnomerulius_pinastri_v2.0 5 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 5 5
Pisolithus_microcarpus_441_v1.0 3 3
Pisolithus_tinctorius_Marx_270_v1.0 5 5
Scleroderma_citrinum_Foug_A_v1.0 6 6
Coprinopsis_cinerea_okayama7_130_v3 5 5
Pleurotus_ostreatus_   (Oyster mushroom)   4 4
Amanita_thiersii_Skay4041_v1.0 6 6
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6 6
Galerina_marginata_v1.0 5 5
Hebeloma_cylindrosporum_h7_v2.0 5 5
Laccaria_bicolor_S238N-H82_ 12 12
Agaricus_bisporus_var._bisporus_ 5 5
Schizophyllum_commune_ 3 3
Stereum_hirsutum_FP-91666_SS1__v1.0 4 4
Heterobasidion_annosum_ 4 4
Gloeophyllum_trabeumv1.0 4 4
Punctularia_strigosozonata_v1.0 5 5
Sebacina_vermifera_MAFF_305830_v1.0 5 5
Fomitiporia_mediterranea_v1.0 4 4
Tulasnella_calospora_AL13/4D_v1.0 5 5
Postia_placenta_ 10 10
Wolfiporia_cocos_MD-104_SS10__v1.0 5 5
Fomitopsis_pinicolav1.0 5 5
Fomitopsis_pinicola_FP-58527_SS1_v3.0 5 5
Phanerochaete_chrysosporium_RP-78_2.1 3 3
Dichomitus_squalens 4 4
Trametes_versicolor_v1.0 5 5
Tremella_mesenterica_   (Witches' butter)   4 4
Daldinia_eschscholzii_EC12_v1.0 3 3
Apiospora_montagnei_NRRL_25634_v1.0 3 3
Magnaporthe_poae_ATCC_64411_22 2 2
Magnaporthe_grisea_70-15_ 3 3
Podospora_anserina_ 2 2
Sporotrichum_thermophile_ATCC_42464_ 3 3
Thielavia_terrestris_NRRL_8126_ 3 3
Chaetomium_globosum_CBS_148.51_ 3 3
Neurospora_tetrasperma_ 3 3
Neurospora_discreta_FGSC_8579_ 3 3
Neurospora_crassa_OR74A_ 3 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   3 3
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 3 3
Acremonium_alcalophilumv_1.0 3 3
Glomerella_graminicola_22 3 3
Fusarium_graminearum_ 3 3
Nectria_haematococca_mpVI_ 3 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 3 3
Trichoderma_asperellum_CBS_433.97_v1.0 3 3
Trichoderma_atroviride_ 2 2
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 3 3
Trichoderma_virens_Gv29-8_ 3 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 3 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   3 3
Botrytis_cinerea_B05.10_ 3 3
Sclerotinia_sclerotiorum_ 3 3
Blumeria_graminis_22 3 3
Didymella_exigua_CBS_183.55_v1.0 3 3
Leptosphaeria_maculans_22 3 3
Setosphaeria_turcica_v1.0 4 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3 3
Cochliobolus_victoriae_FI3_v1.0 4 4
Cochliobolus_carbonum_26-R-13_v1.0 4 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3 3
Alternaria_brassicicola_ 3 3
Cochliobolus_lunatus_m118_v2.0 4 4
Pyrenophora_teres_f._teres_22 3 3
Pyrenophora_tritici-repentis_ 4 4
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 3 3
Zasmidium_cellare_ATCC_36951_v1.0 4 4
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 3 3
Mycosphaerella_fijiensis_CIRAD86_ 2 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4 4
Paracoccidioides_brasiliensis_Pb18_ 3 3
Coccidioides_posadasii_RMSCC_3488_ 3 3
Coccidioides_immitis_RS_ 4 4
Ajellomyces_dermatitidis_SLH14081_ 3 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3 3
Microsporum_canis_CBS_113480_ 3 3
Trichophyton_equinum_CBS_127.97_ 3 3
Trichophyton_verrucosum_HKI_0517_ 3 3
Arthroderma_benhamiae_CBS_112371_ 3 3
Trichophyton_tonsurans_CBS_112818_ 3 3
Trichophyton_rubrum_CBS_118892_ 3 3
Uncinocarpus_reesii_1704_ 3 3
Aspergillus_zonatus_v1.0 3 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 3 3
Penicillium_chrysogenum_v1.0 3 3
Aspergillus_acidus_v1.0 3 3
Aspergillus_fumigatus_Af293 3 3
Aspergillus_brasiliensis_v1.0 3 3
Aspergillus_nidulans_FGSC_A4_ 3 3
Aspergillus_sydowii_v1.0 3 3
Aspergillus_versicolor_v1.0 3 3
Aspergillus_glaucus 3 3
Aspergillus_carbonarius_ITEM_5010_ 3 3
Neosartorya_fischeri_NRRL_181_ 3 3
Aspergillus_terreus_NIH2624_ 3 3
Aspergillus_tubingensis_v1.0 3 3
Aspergillus_wentii_v1.0 3 3
Aspergillus_oryzae_RIB40_ 3 3
Aspergillus_niger_22 3 3
Aspergillus_niger_ATCC_1015_ 3 3
Aspergillus_flavus_NRRL3357_ 3 3
Aspergillus_clavatus_NRRL_1_ 3 3
Penicillium_marneffei_ATCC_18224_ 3 3
Tuber_melanosporum_Mel28_22 3 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3 3
Hansenula_polymorpha_v2.0 2 2
Dekkera_bruxellensis_CBS_2499_v2.0 2 2
Pichia_membranifaciensv1.0 2 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 3
Candida_dubliniensis_CD36_ 3 3
Candida_tropicalis_MYA-3404_ 3 3
Candida_parapsilosis_ 3 3
Candida_albicans_SC5314 3 3
Lodderomyces_elongisporus_NRRL_YB-4239_ 3 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3 3
Pichia_stipitis_CBS_6054_ 3 3
Candida_guilliermondii_ATCC_6260_ 3 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 3
Debaromyces_hansenii 3 3
Wickerhamomyces_anomalus 1 1
Pichia_pastoris_GS115_ 3 3
Yarrowia_lipolytica_CLIB122 2 2
Candida_lusitaniae_ATCC_42720_ 3 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 3
Vanderwaltozyma_polyspora_DSM_70294_ 3 3
Candida_glabrata_CBS138 3 3
Kluyveromyces_thermotolerans_CBS_6340 3 3
Lachancea_kluyveri_ 2 2
Kluyveromyces_waltii 2 2
Ashbya_gossypii_ATCC_10895_ 3 3
Zygosaccharomyces_rouxii_ 2 2
Saccharomyces_mikatae_MIT 2 2
Saccharomyces_paradoxus_MIT 2 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   2 2
Saccharomyces_bayanus_MIT 2 2
Kluyveromyces_lactis 2 2
Schizosaccharomyces_cryophilus_OY26_22 5 5
Schizosaccharomyces_octosporus_yFS286_ 5 5
Schizosaccharomyces_japonicus_yFS275_ 5 5
Schizosaccharomyces_pombe   (Fission yeast)   5 5
Catenaria_anguillulae_PL171_v1.0 4 4
Allomyces_macrogynus_ATCC_38327_ 8 8
Spizellomyces_punctatus_DAOM_BR117_ 8 8
Dictyostelium_discoideum 6 6
Dictyostelium_purpureum_ 4 4
Entamoeba_dispar_1.2 2 2
Entamoeba_invadens_1.2 4 4
Entamoeba_histolytica_1 2 2
Selaginella_moellendorffii_ 15 15
Pinus_taeda   (Loblolly pine)   20 20
Picea_abies   (Norway spruce)   13 13
Eucalyptus_grandis_v201   (Rose gum)   48 45
Theobroma_cacao_B97-61/B2_v1   (Cacao)   26 25
Gossypium_raimondii_v221 110 110
Citrus_clementina_v165 47 45
Citrus_sinensis_v154   (Sweet orange)   80 79
Thellungiella_halophila_v173 36 35
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   43 43
Capsella_rubella_v183 42 41
Arabidopsis_lyrata_   (Lyrate rockcress)   29 28
Arabidopsis_thaliana_10   (Thale cress)   48 47
Carica_papaya_   (Papaya)   17 17
Medicago_truncatula_   (Barrel medic)   52 51
Phaseolus_vulgaris_v186   (French bean)   36 36
Glycine_max_v109   (Soybean)   76 76
Cucumis_sativus_v122   (Cucumber)   38 38
Fragaria_vesca_   (Wild strawberry)   27 27
Malus_domestica_v196   (Apple)   43 43
Prunus_persica_v139   (Peach)   21 20
Linum_usitatissimum_v200   (Flax)   46 46
Manihot_esculenta_v147   (Cassava)   32 32
Populus_trichocarpa_v156   (Black cottonwood)   43 42
Vitis_vinifera_   (Wine grape)   25 24
Mimulus_guttatus_v140   (Spotted monkey flower)   22 21
Solanum_lycopersicum_v.2.3   (Tomato)   32 28
Solanum_tuberosum_   (Potato)   24 24
Actinidia_chinensis_Hongyang_ 33 33
Aquilegia_coerulea_v195 76 75
Triticum_urartu_22 20 20
Triticum_aestivum_22   (Bread wheat)   46 44
Aegilops_tauschii_22 22 21
Brachypodium_distachyon_   (Stiff brome)   43 42
Oryza_barthii_22   (African wild rice)   37 31
Oryza_meridionalis_22 32 32
Oryza_glumaepatula_22 45 44
Oryza_glaberrima   (African rice)   29 28
Oryza_punctata_22 43 39
Oryza_nivara_22 47 43
Oryza_brachyantha_22   (Malo sina)   24 23
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   41 40
Oryza_sativa_v193   (Rice)   39 38
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   42 40
Panicum_virgatum_v202   (Switchgrass)   56 55
Setaria_italica_v164   (Foxtail millet)   40 38
Zea_mays_subsp._mays_   (Maize)   51 50
Zea_mays_v181   (Maize)   63 59
Sorghum_bicolor_   (Sorghum)   27 26
Musa_balbisiana   (Balbis banana)   43 43
Musa_acuminata_22   (Wild Malaysian banana)   39 39
Amborella_trichopoda_22 20 19
Physcomitrella_patens 14 13
Coccomyxa_subellipsoidea_sp._C-169_v2 13 9
Asterochloris_sp._Cgr/DA1pho_v1.0 7 7
Chlorella_variabilis_sp._NC64A_ 11 11
Chlorella_vulgaris_ 11 9
Volvox_carteri_f._nagariensis_ 9 7
Volvox_carteri_v199 9 7
Chlamydomonas_reinhardtii_4.0 11 9
Ostreococcus_sp._RCC809_ 10 8
Ostreococcus_lucimarinus_CCE9901_ 11 9
Ostreococcus_tauri_ 9 8
Bathycoccus_prasinos_ 9 9
Micromonas_sp._RCC299_ 10 10
Micromonas_pusilla_CCMP1545_v3.0 13 13
Cyanidioschyzon_merolae_strain_10D_22 3 3
Cyanidioschyzon_merolae 3 3
Porphyridium_purpureum_02_2012 14 14
Thecamonas_trahens_ATCC_50062_ 7 7
Bigelowiella_natans_CCMP2755_22 36 32
Cyanophora_paradoxa_ 6 6
Leishmania_mexicana_2.4 4 4
Leishmania_major_strain_Friedlin_ 4 4
Leishmania_infantum_JPCM5_2.4 4 4
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 4 4
Trypanosoma_vivax_ 5 5
Trypanosoma_cruzi_strain_CL_Brener 3 3
Trypanosoma_congolense_2.4 5 5
Trypanosoma_brucei_gambiense_v4.1 2 2
Trypanosoma_brucei_TREU927_v4.1 2 2
Ectocarpus_siliculosus 14 13
Aureococcus_anophagefferens_ 23 12
Albugo_laibachii_22 11 11
Pythium_iwayamai_DAOM_BR242034_22 16 14
Pythium_arrhenomanes_ATCC_12531_22 16 13
Pythium_ultimum_v1.7-2 21 19
Pythium_aphanidermatum_DAOM_BR444_22 14 13
Pythium_irregulare_DAOM_BR486_22 19 17
Pythium_vexans_DAOM_BR484_22 22 19
Phytophthora_ramorum_1.1   (Sudden oak death agent)   17 16
Phytophthora_sojae_1.1 21 16
Phytophthora_infestans_T30-4_ 18 16
Phytophthora_capsici_ 11 10
Hyaloperonospora_arabidopsidis_22 9 8
Phaeodactylum_tricornutumCCAP_1055/1 6 6
Fragilariopsis_cylindrus 11 11
Thalassiosira_pseudonana_CCMP1335 1 1
Paramecium_tetraurelia_ 17 17
Tetrahymena_thermophila_SB210_1_ 7 6
Ichthyophthirius_multifiliis_strain_G5_ 8 7
Cryptosporidium_hominis 2 2
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 4 4
Toxoplasma_gondii_VEG 4 4
Toxoplasma_gondii_ME49 4 4
Toxoplasma_gondii_GT1 4 4
Babesia_bovis_T2Bo_ 2 2
Theileria_parva__ 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 2 2
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 2 2
Plasmodium_berghei_ANKA_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 12 10
Naegleria_gruberi_ 2 2
Trichomonas_vaginalis_ 5 5
Guillardia_theta_CCMP2712_v1.0_ 15 15
Emiliania_huxleyi_CCMP1516_ 25 23
Pirellula_staleyi_DSM_6068 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   206 128
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   91 52
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   61 40
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   33 26
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   35 20
Cryptococcus_neoformans_var._grubii_H99_ 3 3
Cryptococcus_neoformans_B-3501A_ 3 3
Cryptococcus_neoformans_JEC21_ 5 5
Paracoccidioides_brasiliensis_Pb01_ 3 3
Paracoccidioides_brasiliensis_Pb03_ 3 3
Coccidioides_posadasii_str._Silveira_ 3 3
Coccidioides_immitis_RMSCC_3703_ 2 2
Coccidioides_immitis_RMSCC_2394_ 3 3
Coccidioides_immitis_H538.4_ 3 3
Ajellomyces_dermatitidis_ER-3_ 3 3
Histoplasma_capsulatum_H143 3 3
Histoplasma_capsulatum_H88 3 3
Histoplasma_capsulatum_G186AR 3 3
Aspergillus_fumigatus_A1163_ 3 3
Candida_albicans_WO-1_ 2 2
Saccharomyces_cerevisiae_UC5 2 2
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 2 2
Saccharomyces_cerevisiae_T7 2 2
Saccharomyces_cerevisiae_FostersB 2 2
Saccharomyces_cerevisiae_VL3 2 2
Saccharomyces_cerevisiae_Vin13 2 2
Saccharomyces_cerevisiae_LalvinQA23 2 2
Saccharomyces_cerevisiae_AWRI796 1 1
Saccharomyces_cerevisiae_Sigma1278b 2 2
Saccharomyces_cerevisiae_W303 2 2
Saccharomyces_cerevisiae_JAY291 2 2
Saccharomyces_cerevisiae_AWRI1631 2 2
Saccharomyces_cerevisiae_YPS163 1 1
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_T73 2 2
Saccharomyces_cerevisiae_CLIB215 2 2
Saccharomyces_cerevisiae_Y10 2 2
Saccharomyces_cerevisiae_YJM789_ 2 2
Saccharomyces_cerevisiae_YJM789 2 2
Saccharomyces_cerevisiae_RM11-1a 2 2
Saccharomyces_cerevisiae_RM11-1a_ 2 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2 2
Schizosaccharomyces_pombe_972h-_ 5 5
Batrachochytrium_dendrobatidis_JEL423_ 3 3
Batrachochytrium_dendrobatidis_JAM81_ 4 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   27 26
Hordeum_vulgare_22   (Domesticated barley)   68 68
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   27 27
Trypanosoma_brucei_Lister_427_v4.1 2 2
Neospora_caninum_Nc-Liverpool_6.2 4 4
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1
Prochlorococcus_marinus_str._MIT_9211 2 2
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Acinetobacter_baumannii_BJAB0868 1 1
Acinetobacter_baumannii_AB0057 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   129 76
Pan_troglodytes_69_2.1.4   (Chimpanzee)   111 63
Gorilla_gorilla_69_3.1   (Western gorilla)   115 63
Pongo_abelii_69_2   (Sumatran orangutan)   97 63
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   98 58
Macaca_mulatta_69_1   (Rhesus monkey)   113 65
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   123 70
Otolemur_garnettii_69_3   (Small-eared galago)   115 65
Microcebus_murinus_69_1   (Gray mouse lemur)   86 51
Rattus_norvegicus_69_3.4   (Norway rat)   108 63
Mus_musculus_69_38   (House mouse)   110 66
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   96 57
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   109 63
Cavia_porcellus_69_3   (Domestic guinea pig)   106 61
Oryctolagus_cuniculus_69_2   (Rabbit)   111 63
Ochotona_princeps_69   (American pika)   92 54
Tupaia_belangeri_69   (Northern tree shrew)   89 50
Sus_scrofa_69_10.2   (Pig)   98 63
Bos_taurus_69_3.1   (Cattle)   102 61
Vicugna_pacos_69_1   (Alpaca)   67 39
Tursiops_truncatus_69_1   (Bottlenose dolphin)   112 61
Mustela_putorius_furo_69_1.0   (Domestic ferret)   117 64
Ailuropoda_melanoleuca_69_1   (Giant panda)   114 66
Canis_familiaris_69_3.1   (Dog)   117 65
Felis_catus_69   (Domestic cat)   74 50
Equus_caballus_69_2   (Horse)   99 60
Myotis_lucifugus_69_2.0   (Little brown bat)   112 67
Pteropus_vampyrus_69_1   (Large flying fox)   102 58
Sorex_araneus_69_1   (European shrew)   85 49
Erinaceus_europaeus_69   (Western European hedgehog)   82 48
Procavia_capensis_69_1   (Cape rock hyrax)   87 52
Loxodonta_africana_69_3   (African savanna elephant)   111 66
Echinops_telfairi_69   (Small Madagascar hedgehog)   89 57
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   79 41
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   77 45
Macropus_eugenii_69_1.0   (Tammar wallaby)   91 52
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   104 60
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   109 61
Ornithorhynchus_anatinus_69_5   (Platypus)   98 66
Petromyzon_marinus_69_7.0   (Sea lamprey)   51 30
Meleagris_gallopavo_69_2   (Turkey)   101 55
Gallus_gallus_69_2   (Chicken)   106 60
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   104 59
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   97 55
Anolis_carolinensis_69_2.0   (Green anole)   104 58
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   95 53
Latimeria_chalumnae_69_1   (Coelacanth)   111 61
Gadus_morhua_69_1   (Atlantic cod)   107 64
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   109 61
Takifugu_rubripes_69_4   (Torafugu)   115 65
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   105 61
Oryzias_latipes_69_1   (Japanese medaka)   95 57
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   122 67
Oreochromis_niloticus_69_1.0   (Nile tilapia)   126 67
Danio_rerio_69_9   (Zebrafish)   137 72
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   30 23
Ciona_intestinalis_69   (Vase tunicate)   38 31
Drosophila_melanogaster_69_5   (Fruit fly)   60 34
Caenorhabditis_elegans_69_215   (Roundworm)   24 15
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2 2
Arabidopsis_thaliana_10   (Thale cress)   33 32

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   493 332
Homo_sapiens__(NCBI_version)   (Human)   226 144
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   111 66
Heliconius_numata__(Incomplete) 12 12
Loa_loa_v3.3_(Request)   (Eye worm)   39 29
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   36 25
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   36 26
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2 2
Lotus_japonicus__(Early_assembly) 15 15
Malus_x_domestica_(Duplicate)   (Apple)   43 43
Ricinus_communis__(Early_assembly)   (Castor bean)   20 20
Nicotiana_benthamiana_0.4.4_(Early_draft) 46 46
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   30 26
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   32 28
Phoenix_dactylifera__(Early_draft)   (Date palm)   18 18
NCBI_plasmid_sequences_(Plasmids) 1 1
Protozoadb_2010_08_(Protozoadb) 77 77
PDB_chains_(SCOP_1.75)_(PDB) 34 25
Protein_Data_Bank_(all_PDB_sequenc) 566 370
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1074 1060
TargetDB__(Targets) 159 109
STRING_v9.0.5_(STRING) 4414 2810
Uniprot_2018_03_genome 49259 32384
NCBI_2017_08_genome 89835 53149

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