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Domain combinations for DNA-binding domain of intron-encoded endonucleases superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a DNA-binding domain of intron-encoded endonucleases domain in that genome.

Complete genomes
Genome     Number   Proteins
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Fomitopsis_pinicolav1.0 1 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Podospora_anserina_ 8 5
Didymella_exigua_CBS_183.55_v1.0 3 3
Leptosphaeria_maculans_22 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6 4
Cochliobolus_victoriae_FI3_v1.0 6 5
Cochliobolus_carbonum_26-R-13_v1.0 5 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3 3
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   2 2
Catenaria_anguillulae_PL171_v1.0 3 2
Chlamydomonas_reinhardtii_4.0 2 2
Porphyridium_purpureum_02_2012 2 2
Bigelowiella_natans_CCMP2755_22 1 1
Cyanophora_paradoxa_ 2 2
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Fragilariopsis_cylindrus 1 1
Symbiodinium_minutum_clade_B1_v1.2 7 6
Emiliania_huxleyi_CCMP1516_ 1 1
Mycobacterium_rhodesiae_NBB3 2 1
Beutenbergia_cavernae_DSM_12333 2 1
Cellulomonas_flavigena_DSM_20109 2 1
[Cellvibrio]_gilvus_ATCC_13127 1 1
butyrate-producing_bacterium_SS3/4 1 1
Tetragenococcus_halophilus_NBRC_12172 1 1
Lactobacillus_rhamnosus_Lc_705 1 1
Lactobacillus_ruminis_ATCC_27782 1 1
Bacillus_anthracis_str._A0248 2 1
Granulicella_mallensis_MP5ACTX8 2 1

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Strains
Genome     Number   Proteins
Gordonibacter_pamelaeae_7-10-1-b 1 1
Clostridium_sp._SY8519 1 1
Clostridium_saccharobutylicum_DSM_13864 1 1
Lactobacillus_rhamnosus_LOCK908 1 1
Lactobacillus_rhamnosus_GG 1 1
Lactobacillus_rhamnosus_GG 1 1
Lactobacillus_amylovorus_GRL_1112 1 1
Streptococcus_agalactiae_2603V/R 1 1
Paenibacillus_mucilaginosus_K02 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1 1
Bacillus_amyloliquefaciens_XH7 1 1
Bacillus_amyloliquefaciens_LL3 2 1
Bacillus_amyloliquefaciens_TA208 1 1
Bacillus_amyloliquefaciens_DSM_7 2 1
Bacillus_thuringiensis_HD-771 1 1
Bacillus_cereus_AH820 2 1
Bacillus_cereus_E33L 1 1
Bacillus_anthracis_str._H9401 2 1
Bacillus_anthracis_str._CDC_684 2 1
Bacillus_anthracis_str._Sterne 2 1
Bacillus_anthracis_str._Ames 2 1
Psychroflexus_torquis_ATCC_700755 1 1
Neisseria_meningitidis_WUE_2594 1 1
Neisseria_meningitidis_M04-240196 1 1
Neisseria_meningitidis_M01-240149 1 1
Neisseria_meningitidis_NZ-05/33 1 1
Neisseria_meningitidis_Z2491 1 1
Neisseria_meningitidis_H44/76 1 1
Neisseria_meningitidis_MC58 1 1

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 2 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 9 9
STRING_v9.0.5_(STRING) 21 15
UniProt__viral_sequences_(Viral) 132 96
TargetDB__(Targets) 1 1
NCBI_viral_sequences_(Viral) 202 166
Protein_Data_Bank_(all_PDB_sequenc) 3 3
NCBI_2017_08_genome 2657 2253
Uniprot_2018_03_genome 2805 2244
PDB_chains_(SCOP_1.75)_(PDB) 2 2

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