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Domain combinations for Intermediate filament protein, coiled coil region superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Intermediate filament protein, coiled coil region domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   312 169
Pan_troglodytes_76_2.1.4   (Chimpanzee)   180 85
Gorilla_gorilla_76_3.1   (Western gorilla)   291 147
Pongo_abelii_76_2   (Sumatran orangutan)   158 78
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   152 75
Papio_anubis_76   (Olive baboon)   210 99
Macaca_mulatta_76_1   (Rhesus monkey)   284 161
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   492 246
Otolemur_garnettii_76_3   (Small-eared galago)   182 92
Microcebus_murinus_76_1   (Gray mouse lemur)   130 67
Rattus_norvegicus_76_5.0   (Norway rat)   163 82
Mus_musculus_76_38   (House mouse)   188 94
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   117 63
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   129 61
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   139 71
Cavia_porcellus_76_3   (Domestic guinea pig)   71 37
Oryctolagus_cuniculus_76_2   (Rabbit)   144 69
Ochotona_princeps_76   (American pika)   119 61
Tupaia_belangeri_76   (Northern tree shrew)   108 57
Sus_scrofa_76_10.2   (Pig)   138 69
Bos_taurus_76_3.1   (Cattle)   177 82
Ovis_aries_76_3.1   (Sheep)   163 77
Vicugna_pacos_76_1   (Alpaca)   58 37
Tursiops_truncatus_76_1   (Bottlenose dolphin)   84 48
Mustela_putorius_furo_76_1.0   (Domestic ferret)   139 69
Ailuropoda_melanoleuca_76_1   (Giant panda)   172 87
Canis_familiaris_76_3.1   (Dog)   206 107
Felis_catus_76_6.2   (Domestic cat)   161 79
Equus_caballus_76_2   (Horse)   190 92
Myotis_lucifugus_76_2.0   (Little brown bat)   168 86
Pteropus_vampyrus_76_1   (Large flying fox)   132 69
Sorex_araneus_76_1   (European shrew)   75 46
Erinaceus_europaeus_76   (Western European hedgehog)   115 60
Procavia_capensis_76_1   (Cape rock hyrax)   109 59
Loxodonta_africana_76_3   (African savanna elephant)   188 90
Echinops_telfairi_76   (Small Madagascar hedgehog)   103 57
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   177 77
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   60 39
Macropus_eugenii_76_1.0   (Tammar wallaby)   118 66
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   160 79
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   121 63
Ornithorhynchus_anatinus_76_5   (Platypus)   151 82
Saccoglossus_kowalevskii_v3.0 2 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   56 36
Meleagris_gallopavo_76_2   (Turkey)   97 50
Gallus_gallus_76_4   (Chicken)   73 39
Anas_platyrhynchos_76_1.0   (Mallard)   56 34
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   53 37
Ficedula_albicollis_76_1.0   (Collared flycatcher)   88 48
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   69 43
Anolis_carolinensis_76_2.0   (Green anole)   102 54
Xenopus_laevis_   (African clawed frog)   367 182
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   121 64
Latimeria_chalumnae_76_1   (Coelacanth)   82 41
Lepisosteus_oculatus_76   (Spotted gar)   101 50
Gadus_morhua_76_1   (Atlantic cod)   113 64
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   103 58
Takifugu_rubripes_76_4   (Torafugu)   397 197
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   153 79
Oryzias_latipes_76_1   (Japanese medaka)   128 67
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   88 49
Poecilia_formosa_76   (Amazon molly)   105 48
Oreochromis_niloticus_76_1.0   (Nile tilapia)   116 59
Astyanax_mexicanus_76   (Mexican tetra)   115 58
Danio_rerio_76_9   (Zebrafish)   200 107
Oikopleura_dioica 8 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   19 11
Ciona_intestinalis_76   (Vase tunicate)   12 7
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5 4
Adineta_vaga 63 35
Octopus_bimaculoides_280 17 12
Crassostrea_gigas_22   (Pacific oyster)   7 4
Lottia_gigantea_   (Owl limpet)   11 6
Helobdella_robusta_ 21 12
Capitella_sp._I_ 3 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Heliconius_melpomene_   (Postman butterfly)   2 1
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   2 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4 4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 1
Linepithema_humile_v1.1   (Argentine ant)   2 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 1
Atta_cephalotes_v1.1 2 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 2
Lucilia_cuprina   (Australian sheep blowfly)   4 2
Drosophila_grimshawi_1.3 4 2
Drosophila_willistoni_1.3 4 2
Drosophila_pseudoobscura_2.13 4 2
Drosophila_persimilis_1.3 4 3
Drosophila_suzukii 4 2
Drosophila_yakuba_1.3 4 2
Drosophila_simulans_1.3 2 1
Drosophila_sechellia_1.3 4 2
Drosophila_melanogaster_76_5   (Fruit fly)   10 5
Drosophila_erecta_1.3 4 2
Drosophila_ananassae_1.3 4 2
Drosophila_virilis_1.2 4 2
Drosophila_mojavensis_1.3 4 2
Megaselia_scalaris_22 2 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4 2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4 2
Anopheles_darlingi_22   (American malaria mosquito)   4 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   4 2
Tribolium_castaneum_3.0   (Red flour beetle)   2 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 1
Acyrthosiphon_pisum_   (Pea aphid)   5 3
Rhodnius_prolixus_22 2 1
Daphnia_pulex_   (Common water flea)   3 2
Strigamia_maritima_22 2 1
Sarcoptes_scabiei 2 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 1
Pristionchus_pacificus_ 11 7
Meloidogyne_incognita_   (Southern root-knot nematode)   10 5
Meloidogyne_hapla_ 3 2
Onchocerca_volvulus_22 10 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   14 10
Caenorhabditis_japonica_ 17 10
Caenorhabditis_brenneri_ 24 13
Caenorhabditis_remanei_ 24 13
Caenorhabditis_elegans_76_235   (Roundworm)   48 25
Caenorhabditis_briggsae_2 25 14
Trichinella_spiralis_22 8 5
Hymenolepis_microstoma_ 7 4
Echinococcus_multilocularis_ 6 4
Echinococcus_granulosus_ 6 4
Taenia_solium_   (Pork tapeworm)   6 4
Schistosoma_mansoni_ 6 4
Mnemiopsis_leidyi   (Sea walnut)   1 1
Acropora_digitifera_v1.0 4 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 1
Hydra_vulgaris 2 2
Amphimedon_queenslandica 4 2
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Sebacina_vermifera_MAFF_305830_v1.0 1 1
Penicillium_marneffei_ATCC_18224_ 1 1
Amborella_trichopoda_22 2 2
Thecamonas_trahens_ATCC_50062_ 1 1
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_sojae_1.1 1 1
Phytophthora_infestans_T30-4_ 1 1
Hyaloperonospora_arabidopsidis_22 1 1
Trichomonas_vaginalis_ 2 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   238 119
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4 2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4 2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   14 10
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   34 18

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   184 85
Pan_troglodytes_69_2.1.4   (Chimpanzee)   152 72
Gorilla_gorilla_69_3.1   (Western gorilla)   208 106
Pongo_abelii_69_2   (Sumatran orangutan)   153 75
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   136 66
Macaca_mulatta_69_1   (Rhesus monkey)   220 122
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   310 154
Otolemur_garnettii_69_3   (Small-eared galago)   179 91
Microcebus_murinus_69_1   (Gray mouse lemur)   130 67
Rattus_norvegicus_69_3.4   (Norway rat)   145 73
Mus_musculus_69_38   (House mouse)   159 74
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   117 63
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   126 60
Cavia_porcellus_69_3   (Domestic guinea pig)   69 36
Oryctolagus_cuniculus_69_2   (Rabbit)   122 60
Ochotona_princeps_69   (American pika)   119 61
Tupaia_belangeri_69   (Northern tree shrew)   108 57
Sus_scrofa_69_10.2   (Pig)   131 64
Bos_taurus_69_3.1   (Cattle)   166 77
Vicugna_pacos_69_1   (Alpaca)   58 37
Tursiops_truncatus_69_1   (Bottlenose dolphin)   84 48
Mustela_putorius_furo_69_1.0   (Domestic ferret)   139 69
Ailuropoda_melanoleuca_69_1   (Giant panda)   153 77
Canis_familiaris_69_3.1   (Dog)   149 76
Felis_catus_69   (Domestic cat)   116 63
Equus_caballus_69_2   (Horse)   165 81
Myotis_lucifugus_69_2.0   (Little brown bat)   167 85
Pteropus_vampyrus_69_1   (Large flying fox)   132 69
Sorex_araneus_69_1   (European shrew)   75 46
Erinaceus_europaeus_69   (Western European hedgehog)   115 60
Procavia_capensis_69_1   (Cape rock hyrax)   109 59
Loxodonta_africana_69_3   (African savanna elephant)   123 60
Echinops_telfairi_69   (Small Madagascar hedgehog)   103 57
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   85 53
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   60 39
Macropus_eugenii_69_1.0   (Tammar wallaby)   118 66
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   141 69
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   116 60
Ornithorhynchus_anatinus_69_5   (Platypus)   125 70
Petromyzon_marinus_69_7.0   (Sea lamprey)   53 33
Meleagris_gallopavo_69_2   (Turkey)   56 32
Gallus_gallus_69_2   (Chicken)   62 35
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   49 34
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   60 39
Anolis_carolinensis_69_2.0   (Green anole)   82 44
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   96 50
Latimeria_chalumnae_69_1   (Coelacanth)   77 39
Gadus_morhua_69_1   (Atlantic cod)   89 52
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   90 51
Takifugu_rubripes_69_4   (Torafugu)   90 46
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   85 44
Oryzias_latipes_69_1   (Japanese medaka)   88 48
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   88 49
Oreochromis_niloticus_69_1.0   (Nile tilapia)   98 50
Danio_rerio_69_9   (Zebrafish)   128 65
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   12 6
Ciona_intestinalis_69   (Vase tunicate)   12 7
Drosophila_melanogaster_69_5   (Fruit fly)   4 2
Caenorhabditis_elegans_69_215   (Roundworm)   21 11

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   313 169
Homo_sapiens__(NCBI_version)   (Human)   185 86
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   157 72
Loa_loa_v3.3_(Request)   (Eye worm)   11 6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   8 7
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   7 5
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 31 31
STRING_v9.0.5_(STRING) 3252 1692
Uniprot_2018_03_genome 24274 12807
NCBI_2017_08_genome 37582 19325
PDB_chains_(SCOP_1.75)_(PDB) 4 4
TargetDB__(Targets) 100 54
Protozoadb_2010_08_(Protozoadb) 4 4
Protein_Data_Bank_(all_PDB_sequenc) 27 27

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