SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for SAP domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SAP domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   100 100
Pan_troglodytes_76_2.1.4   (Chimpanzee)   27 27
Gorilla_gorilla_76_3.1   (Western gorilla)   37 37
Pongo_abelii_76_2   (Sumatran orangutan)   23 23
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   20 20
Papio_anubis_76   (Olive baboon)   29 29
Macaca_mulatta_76_1   (Rhesus monkey)   38 38
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   52 52
Otolemur_garnettii_76_3   (Small-eared galago)   23 23
Microcebus_murinus_76_1   (Gray mouse lemur)   16 16
Rattus_norvegicus_76_5.0   (Norway rat)   26 26
Mus_musculus_76_38   (House mouse)   56 56
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   18 18
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   23 23
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   22 21
Cavia_porcellus_76_3   (Domestic guinea pig)   23 23
Oryctolagus_cuniculus_76_2   (Rabbit)   20 20
Ochotona_princeps_76   (American pika)   15 15
Tupaia_belangeri_76   (Northern tree shrew)   9 9
Sus_scrofa_76_10.2   (Pig)   20 20
Bos_taurus_76_3.1   (Cattle)   25 25
Ovis_aries_76_3.1   (Sheep)   25 25
Vicugna_pacos_76_1   (Alpaca)   9 9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   19 19
Mustela_putorius_furo_76_1.0   (Domestic ferret)   22 22
Ailuropoda_melanoleuca_76_1   (Giant panda)   24 24
Canis_familiaris_76_3.1   (Dog)   28 28
Felis_catus_76_6.2   (Domestic cat)   18 18
Equus_caballus_76_2   (Horse)   21 21
Myotis_lucifugus_76_2.0   (Little brown bat)   21 21
Pteropus_vampyrus_76_1   (Large flying fox)   18 18
Sorex_araneus_76_1   (European shrew)   13 13
Erinaceus_europaeus_76   (Western European hedgehog)   10 9
Procavia_capensis_76_1   (Cape rock hyrax)   18 18
Loxodonta_africana_76_3   (African savanna elephant)   31 31
Echinops_telfairi_76   (Small Madagascar hedgehog)   16 16
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   25 25
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   17 14
Macropus_eugenii_76_1.0   (Tammar wallaby)   14 14
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   16 16
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   25 25
Ornithorhynchus_anatinus_76_5   (Platypus)   13 13
Saccoglossus_kowalevskii_v3.0 55 48
Petromyzon_marinus_76_7.0   (Sea lamprey)   8 8
Meleagris_gallopavo_76_2   (Turkey)   18 16
Gallus_gallus_76_4   (Chicken)   18 17
Anas_platyrhynchos_76_1.0   (Mallard)   10 10
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   14 14
Ficedula_albicollis_76_1.0   (Collared flycatcher)   15 15
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   21 21
Anolis_carolinensis_76_2.0   (Green anole)   19 19
Xenopus_laevis_   (African clawed frog)   68 64
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   33 31
Latimeria_chalumnae_76_1   (Coelacanth)   34 33
Lepisosteus_oculatus_76   (Spotted gar)   22 22
Gadus_morhua_76_1   (Atlantic cod)   23 23
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   22 21
Takifugu_rubripes_76_4   (Torafugu)   67 67
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   24 24
Oryzias_latipes_76_1   (Japanese medaka)   23 23
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   23 23
Poecilia_formosa_76   (Amazon molly)   24 23
Oreochromis_niloticus_76_1.0   (Nile tilapia)   31 31
Astyanax_mexicanus_76   (Mexican tetra)   30 29
Danio_rerio_76_9   (Zebrafish)   56 53
Oikopleura_dioica 9 9
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   6 6
Ciona_intestinalis_76   (Vase tunicate)   7 7
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   10 10
Adineta_vaga 31 28
Octopus_bimaculoides_280 53 53
Crassostrea_gigas_22   (Pacific oyster)   13 13
Lottia_gigantea_   (Owl limpet)   10 10
Helobdella_robusta_ 94 94
Capitella_sp._I_ 13 12
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9 8
Heliconius_melpomene_   (Postman butterfly)   7 6
Bombyx_mori_   (Domestic silkworm)   7 7
Nasonia_vitripennis_   (Jewel wasp)   7 7
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   11 11
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   15 14
Linepithema_humile_v1.1   (Argentine ant)   44 43
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   8 7
Solenopsis_invicta_v.2.2.3   (Red fire ant)   15 14
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   9 8
Atta_cephalotes_v1.1 11 11
Camponotus_floridanus_v3.3   (Florida carpenter ant)   11 10
Lucilia_cuprina   (Australian sheep blowfly)   14 14
Drosophila_grimshawi_1.3 7 7
Drosophila_willistoni_1.3 16 16
Drosophila_pseudoobscura_2.13 9 8
Drosophila_persimilis_1.3 8 7
Drosophila_suzukii 8 7
Drosophila_yakuba_1.3 11 11
Drosophila_simulans_1.3 11 11
Drosophila_sechellia_1.3 7 7
Drosophila_melanogaster_76_5   (Fruit fly)   26 26
Drosophila_erecta_1.3 7 7
Drosophila_ananassae_1.3 7 7
Drosophila_virilis_1.2 7 7
Drosophila_mojavensis_1.3 7 7
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   18 18
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   7 7
Anopheles_darlingi_22   (American malaria mosquito)   5 5
Anopheles_gambiae_49_3j   (African malaria mosquito)   10 9
Tribolium_castaneum_3.0   (Red flour beetle)   9 9
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   11 10
Acyrthosiphon_pisum_   (Pea aphid)   11 11
Rhodnius_prolixus_22 6 6
Daphnia_pulex_   (Common water flea)   8 8
Strigamia_maritima_22 11 11
Sarcoptes_scabiei 4 4
Tetranychus_urticae_   (Two-spotted spider mite)   6 6
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   11 11
Pristionchus_pacificus_ 7 7
Meloidogyne_incognita_   (Southern root-knot nematode)   8 8
Meloidogyne_hapla_ 8 8
Onchocerca_volvulus_22 7 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   15 15
Caenorhabditis_japonica_ 5 5
Caenorhabditis_brenneri_ 7 7
Caenorhabditis_remanei_ 6 6
Caenorhabditis_elegans_76_235   (Roundworm)   7 7
Caenorhabditis_briggsae_2 5 5
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 7 7
Echinococcus_multilocularis_ 6 6
Echinococcus_granulosus_ 6 6
Taenia_solium_   (Pork tapeworm)   6 6
Schistosoma_mansoni_ 17 17
Mnemiopsis_leidyi   (Sea walnut)   8 8
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 21 20
Nematostella_vectensis_1.0   (Starlet sea anemone)   18 17
Hydra_vulgaris 12 12
Amphimedon_queenslandica 11 11
Trichoplax_adhaerens_ 7 7
Proterospongia_sp._ATCC_50818_ 17 14
Monosiga_brevicollis_ 15 15
Sphaeroforma_arctica_JP610_ 7 6
Capsaspora_owczarzaki_ATCC_30864_ 10 10
Mortierella_verticillata_NRRL_6337_ 8 8
Phycomyces_blakesleeanus_ 8 8
Rhizopus_oryzae_RA_99-880_ 5 5
Mucor_circinelloides_ 8 8
Rhizomucor_miehei_CAU432_ 6 6
Malassezia_globosa_CBS_7966_ 4 4
Sporisorium_reilianum_22 4 4
Ustilago_maydis_ 4 4
Mixia_osmundae_IAM_14324_v1.0 5 5
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 4 4
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2 2
Melampsora_laricis-populina_ 4 4
Rhodotorula_graminis_WP1_v1.0 2 2
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 2 2
Wallemia_sebi_v1.0 3 3
Sphaerobolus_stellatus_v1.0 1 1
Piloderma_croceum_F_1598_v1.0 2 2
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Coniophora_puteana 1 1
Hydnomerulius_pinastri_v2.0 2 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Pisolithus_microcarpus_441_v1.0 1 1
Pisolithus_tinctorius_Marx_270_v1.0 2 2
Scleroderma_citrinum_Foug_A_v1.0 2 2
Coprinopsis_cinerea_okayama7_130_v3 2 2
Pleurotus_ostreatus_   (Oyster mushroom)   2 2
Amanita_thiersii_Skay4041_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2 2
Galerina_marginata_v1.0 2 2
Hebeloma_cylindrosporum_h7_v2.0 2 2
Laccaria_bicolor_S238N-H82_ 4 4
Agaricus_bisporus_var._bisporus_ 2 2
Schizophyllum_commune_ 2 2
Stereum_hirsutum_FP-91666_SS1__v1.0 3 3
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 3 3
Punctularia_strigosozonata_v1.0 2 2
Sebacina_vermifera_MAFF_305830_v1.0 1 1
Fomitiporia_mediterranea_v1.0 2 2
Tulasnella_calospora_AL13/4D_v1.0 4 4
Wolfiporia_cocos_MD-104_SS10__v1.0 1 1
Fomitopsis_pinicolav1.0 2 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2 2
Phanerochaete_chrysosporium_RP-78_2.1 2 2
Dichomitus_squalens 2 2
Trametes_versicolor_v1.0 2 2
Tremella_mesenterica_   (Witches' butter)   4 4
Daldinia_eschscholzii_EC12_v1.0 3 3
Apiospora_montagnei_NRRL_25634_v1.0 3 3
Magnaporthe_poae_ATCC_64411_22 3 3
Magnaporthe_grisea_70-15_ 3 3
Podospora_anserina_ 4 4
Sporotrichum_thermophile_ATCC_42464_ 3 3
Thielavia_terrestris_NRRL_8126_ 3 3
Chaetomium_globosum_CBS_148.51_ 4 4
Neurospora_tetrasperma_ 4 4
Neurospora_discreta_FGSC_8579_ 4 4
Neurospora_crassa_OR74A_ 5 5
Cryphonectria_parasitica_   (Chestnut blight fungus)   3 3
Verticillium_albo-atrum_VaMs.102_ 3 3
Verticillium_dahliae_VdLs.17_ 3 3
Acremonium_alcalophilumv_1.0 3 3
Glomerella_graminicola_22 4 4
Fusarium_graminearum_ 3 3
Nectria_haematococca_mpVI_ 6 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4 4
Fusarium_verticillioides_7600_ 3 3
Trichoderma_asperellum_CBS_433.97_v1.0 3 3
Trichoderma_atroviride_ 3 3
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 2 2
Trichoderma_virens_Gv29-8_ 3 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 3 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   3 3
Botrytis_cinerea_B05.10_ 5 5
Sclerotinia_sclerotiorum_ 4 4
Blumeria_graminis_22 2 2
Didymella_exigua_CBS_183.55_v1.0 4 4
Leptosphaeria_maculans_22 4 4
Setosphaeria_turcica_v1.0 3 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3 3
Cochliobolus_victoriae_FI3_v1.0 3 3
Cochliobolus_carbonum_26-R-13_v1.0 3 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2 2
Alternaria_brassicicola_ 3 3
Cochliobolus_lunatus_m118_v2.0 4 4
Pyrenophora_teres_f._teres_22 2 2
Pyrenophora_tritici-repentis_ 2 2
Stagonospora_nodorum_ 2 2
Mycosphaerella_graminicola_IPO323_ 2 2
Zasmidium_cellare_ATCC_36951_v1.0 2 2
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 3 3
Mycosphaerella_fijiensis_CIRAD86_ 2 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4 4
Paracoccidioides_brasiliensis_Pb18_ 3 3
Coccidioides_posadasii_RMSCC_3488_ 3 3
Coccidioides_immitis_RS_ 3 3
Ajellomyces_dermatitidis_SLH14081_ 4 4
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2 2
Microsporum_canis_CBS_113480_ 3 3
Trichophyton_equinum_CBS_127.97_ 5 5
Trichophyton_verrucosum_HKI_0517_ 3 3
Arthroderma_benhamiae_CBS_112371_ 3 3
Trichophyton_tonsurans_CBS_112818_ 5 5
Trichophyton_rubrum_CBS_118892_ 6 6
Uncinocarpus_reesii_1704_ 3 3
Aspergillus_zonatus_v1.0 6 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 4 4
Penicillium_chrysogenum_v1.0 4 4
Aspergillus_acidus_v1.0 5 5
Aspergillus_fumigatus_Af293 4 4
Aspergillus_brasiliensis_v1.0 6 6
Aspergillus_nidulans_FGSC_A4_ 5 5
Aspergillus_sydowii_v1.0 4 4
Aspergillus_versicolor_v1.0 4 4
Aspergillus_glaucus 4 4
Aspergillus_carbonarius_ITEM_5010_ 5 5
Neosartorya_fischeri_NRRL_181_ 5 5
Aspergillus_terreus_NIH2624_ 5 5
Aspergillus_tubingensis_v1.0 5 5
Aspergillus_wentii_v1.0 5 5
Aspergillus_oryzae_RIB40_ 3 3
Aspergillus_niger_22 5 5
Aspergillus_niger_ATCC_1015_ 2 2
Aspergillus_flavus_NRRL3357_ 4 4
Aspergillus_clavatus_NRRL_1_ 5 5
Penicillium_marneffei_ATCC_18224_ 5 5
Tuber_melanosporum_Mel28_22 4 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4 4
Hansenula_polymorpha_v2.0 2 2
Dekkera_bruxellensis_CBS_2499_v2.0 2 2
Pichia_membranifaciensv1.0 2 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1 1
Candida_dubliniensis_CD36_ 2 2
Candida_tropicalis_MYA-3404_ 2 2
Candida_parapsilosis_ 1 1
Candida_albicans_SC5314 2 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 2 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3 3
Pichia_stipitis_CBS_6054_ 2 2
Candida_guilliermondii_ATCC_6260_ 2 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 2 2
Wickerhamomyces_anomalus 2 2
Pichia_pastoris_GS115_ 4 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 2
Yarrowia_lipolytica_CLIB122 3 3
Candida_lusitaniae_ATCC_42720_ 2 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2 2
Vanderwaltozyma_polyspora_DSM_70294_ 2 2
Candida_glabrata_CBS138 2 2
Kluyveromyces_thermotolerans_CBS_6340 3 3
Lachancea_kluyveri_ 2 2
Kluyveromyces_waltii 3 3
Ashbya_gossypii_ATCC_10895_ 3 3
Zygosaccharomyces_rouxii_ 3 3
Saccharomyces_mikatae_MIT 4 4
Saccharomyces_paradoxus_MIT 4 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4 4
Saccharomyces_bayanus_MIT 4 4
Kluyveromyces_lactis 3 3
Schizosaccharomyces_cryophilus_OY26_22 3 3
Schizosaccharomyces_octosporus_yFS286_ 4 4
Schizosaccharomyces_japonicus_yFS275_ 3 3
Schizosaccharomyces_pombe   (Fission yeast)   4 4
Catenaria_anguillulae_PL171_v1.0 3 3
Allomyces_macrogynus_ATCC_38327_ 9 9
Spizellomyces_punctatus_DAOM_BR117_ 9 9
Dictyostelium_discoideum 10 10
Dictyostelium_purpureum_ 7 7
Entamoeba_dispar_1.2 1 1
Entamoeba_invadens_1.2 1 1
Entamoeba_histolytica_1 1 1
Selaginella_moellendorffii_ 14 12
Pinus_taeda   (Loblolly pine)   4 4
Picea_abies   (Norway spruce)   3 3
Eucalyptus_grandis_v201   (Rose gum)   14 13
Theobroma_cacao_B97-61/B2_v1   (Cacao)   10 9
Gossypium_raimondii_v221 43 42
Citrus_clementina_v165 18 17
Citrus_sinensis_v154   (Sweet orange)   22 20
Thellungiella_halophila_v173 13 12
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   12 10
Capsella_rubella_v183 11 10
Arabidopsis_lyrata_   (Lyrate rockcress)   11 10
Arabidopsis_thaliana_10   (Thale cress)   18 17
Carica_papaya_   (Papaya)   6 5
Medicago_truncatula_   (Barrel medic)   16 16
Phaseolus_vulgaris_v186   (French bean)   13 13
Glycine_max_v109   (Soybean)   12 12
Cucumis_sativus_v122   (Cucumber)   12 11
Fragaria_vesca_   (Wild strawberry)   10 9
Malus_domestica_v196   (Apple)   16 13
Prunus_persica_v139   (Peach)   13 11
Linum_usitatissimum_v200   (Flax)   13 11
Manihot_esculenta_v147   (Cassava)   13 12
Populus_trichocarpa_v156   (Black cottonwood)   16 16
Vitis_vinifera_   (Wine grape)   7 7
Mimulus_guttatus_v140   (Spotted monkey flower)   9 7
Solanum_lycopersicum_v.2.3   (Tomato)   13 11
Solanum_tuberosum_   (Potato)   13 12
Actinidia_chinensis_Hongyang_ 12 11
Aquilegia_coerulea_v195 25 25
Triticum_urartu_22 12 12
Triticum_aestivum_22   (Bread wheat)   26 26
Aegilops_tauschii_22 9 9
Brachypodium_distachyon_   (Stiff brome)   13 13
Oryza_barthii_22   (African wild rice)   14 14
Oryza_meridionalis_22 16 16
Oryza_glumaepatula_22 17 16
Oryza_glaberrima   (African rice)   10 10
Oryza_punctata_22 15 15
Oryza_nivara_22 18 17
Oryza_brachyantha_22   (Malo sina)   11 11
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   11 11
Oryza_sativa_v193   (Rice)   11 11
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   13 13
Panicum_virgatum_v202   (Switchgrass)   18 18
Setaria_italica_v164   (Foxtail millet)   15 15
Zea_mays_subsp._mays_   (Maize)   16 16
Zea_mays_v181   (Maize)   19 19
Sorghum_bicolor_   (Sorghum)   9 8
Musa_balbisiana   (Balbis banana)   11 11
Musa_acuminata_22   (Wild Malaysian banana)   10 10
Amborella_trichopoda_22 16 14
Physcomitrella_patens 12 11
Coccomyxa_subellipsoidea_sp._C-169_v2 13 13
Asterochloris_sp._Cgr/DA1pho_v1.0 6 6
Chlorella_variabilis_sp._NC64A_ 14 13
Chlorella_vulgaris_ 11 11
Volvox_carteri_f._nagariensis_ 12 10
Volvox_carteri_v199 11 9
Chlamydomonas_reinhardtii_4.0 13 11
Ostreococcus_sp._RCC809_ 6 6
Ostreococcus_lucimarinus_CCE9901_ 5 5
Ostreococcus_tauri_ 5 5
Bathycoccus_prasinos_ 18 18
Micromonas_sp._RCC299_ 18 17
Micromonas_pusilla_CCMP1545_v3.0 21 21
Cyanidioschyzon_merolae_strain_10D_22 6 6
Cyanidioschyzon_merolae 6 6
Porphyridium_purpureum_02_2012 7 6
Thecamonas_trahens_ATCC_50062_ 13 7
Bigelowiella_natans_CCMP2755_22 31 30
Cyanophora_paradoxa_ 3 3
Leishmania_mexicana_2.4 2 2
Leishmania_major_strain_Friedlin_ 2 2
Leishmania_infantum_JPCM5_2.4 2 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2 2
Trypanosoma_vivax_ 3 3
Trypanosoma_cruzi_strain_CL_Brener 3 3
Trypanosoma_congolense_2.4 3 3
Trypanosoma_brucei_gambiense_v4.1 4 4
Trypanosoma_brucei_TREU927_v4.1 4 4
Ectocarpus_siliculosus 29 26
Aureococcus_anophagefferens_ 10 10
Albugo_laibachii_22 21 21
Pythium_iwayamai_DAOM_BR242034_22 11 11
Pythium_arrhenomanes_ATCC_12531_22 10 10
Pythium_ultimum_v1.7-2 12 12
Pythium_aphanidermatum_DAOM_BR444_22 9 9
Pythium_irregulare_DAOM_BR486_22 12 12
Pythium_vexans_DAOM_BR484_22 14 14
Phytophthora_ramorum_1.1   (Sudden oak death agent)   10 10
Phytophthora_sojae_1.1 9 9
Phytophthora_infestans_T30-4_ 13 13
Phytophthora_capsici_ 13 13
Hyaloperonospora_arabidopsidis_22 12 12
Phaeodactylum_tricornutumCCAP_1055/1 20 15
Fragilariopsis_cylindrus 48 46
Thalassiosira_pseudonana_CCMP1335 20 19
Perkinsus_marinus_ATCC_50983_ 15 14
Tetrahymena_thermophila_SB210_1_ 1 1
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 1 1
Babesia_bovis_T2Bo_ 2 2
Theileria_parva__ 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 2 2
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 2 2
Plasmodium_berghei_ANKA_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 65 61
Naegleria_gruberi_ 6 6
Trichomonas_vaginalis_ 6 6
Guillardia_theta_CCMP2712_v1.0_ 25 25
Emiliania_huxleyi_CCMP1516_ 50 50
Eggerthella_lenta_DSM_2243 1 1
Slackia_heliotrinireducens_DSM_20476 2 2
Nakamurella_multipartita_DSM_44233 3 3
Acidaminococcus_intestini_RyC-MR95 1 1
Desulfotomaculum_acetoxidans_DSM_771 1 1
Clostridium_difficile_630 1 1
Clostridium_sticklandii_DSM_519 1 1
Enterococcus_hirae_ATCC_9790 1 1
Streptococcus_pneumoniae_P1031 1 1
Macrococcus_caseolyticus_JCSC5402 1 1
Staphylococcus_haemolyticus_JCSC1435 1 1
Acidobacterium_capsulatum_ATCC_51196 1 1
Nitratifractor_salsuginis_DSM_16511 1 1
Micavibrio_aeruginosavorus_ARL-13 1 1
Archaeoglobus_veneficus_SNP6 1 1
Pyrococcus_furiosus_COM1 1 1
Methanocaldococcus_sp._FS406-22 1 1
Methanobrevibacter_ruminantium_M1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   45 43
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   22 22
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   10 9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   8 8
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6 6
Cryptococcus_neoformans_var._grubii_H99_ 4 4
Cryptococcus_neoformans_B-3501A_ 4 4
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 4 4
Paracoccidioides_brasiliensis_Pb03_ 3 3
Coccidioides_posadasii_str._Silveira_ 3 3
Coccidioides_immitis_RMSCC_3703_ 2 2
Coccidioides_immitis_RMSCC_2394_ 3 3
Coccidioides_immitis_H538.4_ 2 2
Ajellomyces_dermatitidis_ER-3_ 4 4
Histoplasma_capsulatum_H143 5 5
Histoplasma_capsulatum_H88 6 6
Histoplasma_capsulatum_G186AR 4 4
Aspergillus_fumigatus_A1163_ 3 3
Candida_albicans_WO-1_ 1 1
Saccharomyces_cerevisiae_UC5 3 3
Saccharomyces_cerevisiae_PW5 3 3
Saccharomyces_cerevisiae_FL100 4 4
Saccharomyces_cerevisiae_CLIB324 2 2
Saccharomyces_cerevisiae_CBS7960 4 4
Saccharomyces_cerevisiae_YJM269 4 4
Saccharomyces_cerevisiae_T7 4 4
Saccharomyces_cerevisiae_FostersB 3 3
Saccharomyces_cerevisiae_FostersO 4 4
Saccharomyces_cerevisiae_VL3 4 4
Saccharomyces_cerevisiae_Vin13 3 3
Saccharomyces_cerevisiae_LalvinQA23 2 2
Saccharomyces_cerevisiae_AWRI796 2 2
Saccharomyces_cerevisiae_Sigma1278b 4 4
Saccharomyces_cerevisiae_W303 4 4
Saccharomyces_cerevisiae_JAY291 4 4
Saccharomyces_cerevisiae_AWRI1631 3 3
Saccharomyces_cerevisiae_YPS163 2 2
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_T73 1 1
Saccharomyces_cerevisiae_CLIB215 3 3
Saccharomyces_cerevisiae_Y10 1 1
Saccharomyces_cerevisiae_YJM789_ 4 4
Saccharomyces_cerevisiae_YJM789 4 4
Saccharomyces_cerevisiae_RM11-1a 4 4
Saccharomyces_cerevisiae_RM11-1a_ 4 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4 4
Schizosaccharomyces_pombe_972h-_ 4 4
Batrachochytrium_dendrobatidis_JEL423_ 2 2
Batrachochytrium_dendrobatidis_JAM81_ 3 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   10 9
Hordeum_vulgare_22   (Domesticated barley)   18 18
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   10 10
Trypanosoma_brucei_Lister_427_v4.1 4 4
Neospora_caninum_Nc-Liverpool_6.2 1 1
Plasmodium_falciparum_HB3_ 2 2
Cyanobium_gracile_PCC_6307 1 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Streptococcus_pneumoniae_A026 1 1
Streptococcus_pneumoniae_ST556 1 1
Streptococcus_pneumoniae_SPNA45 1 1
Streptococcus_pneumoniae_INV104 1 1
Streptococcus_pneumoniae_gamPNI0373 1 1
Streptococcus_pneumoniae_AP200 1 1
Streptococcus_pneumoniae_TCH8431/19A 1 1
Streptococcus_pneumoniae_JJA 1 1
Streptococcus_pneumoniae_Hungary19A-6 1 1
Streptococcus_pneumoniae_Taiwan19F-14 1 1
Streptococcus_pneumoniae_TIGR4 1 1
Staphylococcus_aureus_Bmb9393 2 2
Staphylococcus_aureus_M1 1 1
Staphylococcus_aureus_subsp._aureus_Z172 1 1
Staphylococcus_aureus_subsp._aureus_SA957 1 1
Staphylococcus_aureus_subsp._aureus_SA40 1 1
Staphylococcus_aureus_subsp._aureus_M013 1 1
Staphylococcus_aureus_subsp._aureus_VC40 1 1
Staphylococcus_aureus_subsp._aureus_T0131 1 1
Staphylococcus_aureus_subsp._aureus_ED98 1 1
Staphylococcus_aureus_subsp._aureus_TW20 1 1
Staphylococcus_aureus_subsp._aureus_55/2053 1 1
Staphylococcus_aureus_subsp._aureus_TCH60 1 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1 1
Staphylococcus_aureus_subsp._aureus_str._Newman 1 1
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1 1
Staphylococcus_aureus_subsp._aureus_COL 1 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1 1
Haemophilus_parasuis_ZJ0906 1 1
Pyrococcus_furiosus_DSM_3638 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   28 28
Pan_troglodytes_69_2.1.4   (Chimpanzee)   24 24
Gorilla_gorilla_69_3.1   (Western gorilla)   25 25
Pongo_abelii_69_2   (Sumatran orangutan)   21 21
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   18 18
Macaca_mulatta_69_1   (Rhesus monkey)   25 25
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   28 28
Otolemur_garnettii_69_3   (Small-eared galago)   23 23
Microcebus_murinus_69_1   (Gray mouse lemur)   16 16
Rattus_norvegicus_69_3.4   (Norway rat)   22 22
Mus_musculus_69_38   (House mouse)   24 24
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   18 18
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   21 21
Cavia_porcellus_69_3   (Domestic guinea pig)   22 22
Oryctolagus_cuniculus_69_2   (Rabbit)   19 19
Ochotona_princeps_69   (American pika)   15 15
Tupaia_belangeri_69   (Northern tree shrew)   9 9
Sus_scrofa_69_10.2   (Pig)   20 20
Bos_taurus_69_3.1   (Cattle)   24 24
Vicugna_pacos_69_1   (Alpaca)   9 9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   19 19
Mustela_putorius_furo_69_1.0   (Domestic ferret)   21 21
Ailuropoda_melanoleuca_69_1   (Giant panda)   21 21
Canis_familiaris_69_3.1   (Dog)   22 22
Felis_catus_69   (Domestic cat)   13 12
Equus_caballus_69_2   (Horse)   19 19
Myotis_lucifugus_69_2.0   (Little brown bat)   21 21
Pteropus_vampyrus_69_1   (Large flying fox)   18 18
Sorex_araneus_69_1   (European shrew)   13 13
Erinaceus_europaeus_69   (Western European hedgehog)   10 9
Procavia_capensis_69_1   (Cape rock hyrax)   18 18
Loxodonta_africana_69_3   (African savanna elephant)   23 23
Echinops_telfairi_69   (Small Madagascar hedgehog)   16 16
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10 10
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   17 14
Macropus_eugenii_69_1.0   (Tammar wallaby)   14 14
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   13 13
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   22 22
Ornithorhynchus_anatinus_69_5   (Platypus)   12 12
Petromyzon_marinus_69_7.0   (Sea lamprey)   7 7
Meleagris_gallopavo_69_2   (Turkey)   14 12
Gallus_gallus_69_2   (Chicken)   16 15
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   14 14
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   18 18
Anolis_carolinensis_69_2.0   (Green anole)   16 16
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   22 20
Latimeria_chalumnae_69_1   (Coelacanth)   24 23
Gadus_morhua_69_1   (Atlantic cod)   23 23
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   20 19
Takifugu_rubripes_69_4   (Torafugu)   19 19
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   21 21
Oryzias_latipes_69_1   (Japanese medaka)   21 21
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   22 22
Oreochromis_niloticus_69_1.0   (Nile tilapia)   22 22
Danio_rerio_69_9   (Zebrafish)   32 31
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5 5
Ciona_intestinalis_69   (Vase tunicate)   7 7
Drosophila_melanogaster_69_5   (Fruit fly)   7 7
Caenorhabditis_elegans_69_215   (Roundworm)   7 7
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4 4
Arabidopsis_thaliana_10   (Thale cress)   9 8

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   108 108
Homo_sapiens__(NCBI_version)   (Human)   35 35
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   23 23
Heliconius_numata__(Incomplete) 5 5
Loa_loa_v3.3_(Request)   (Eye worm)   9 9
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   7 7
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   7 7
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 6 6
Malus_x_domestica_(Duplicate)   (Apple)   16 13
Ricinus_communis__(Early_assembly)   (Castor bean)   6 6
Nicotiana_benthamiana_0.4.4_(Early_draft) 15 13
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   13 11
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   13 11
Phoenix_dactylifera__(Early_draft)   (Date palm)   9 8
TargetDB__(Targets) 46 46
PDB_chains_(SCOP_1.75)_(PDB) 8 7
STRING_v9.0.5_(STRING) 1107 1085
Uniprot_2018_03_genome 14681 14392
NCBI_2017_08_genome 23120 22626
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 52 52
UniProt__viral_sequences_(Viral) 10 10
Protozoadb_2010_08_(Protozoadb) 60 60
Protein_Data_Bank_(all_PDB_sequenc) 35 34
NCBI_viral_sequences_(Viral) 11 11

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