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Domain combinations for C-terminal domain of PLC-beta superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a C-terminal domain of PLC-beta domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   20 20
Pan_troglodytes_76_2.1.4   (Chimpanzee)   4 4
Gorilla_gorilla_76_3.1   (Western gorilla)   6 6
Pongo_abelii_76_2   (Sumatran orangutan)   5 5
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4 4
Papio_anubis_76   (Olive baboon)   5 5
Macaca_mulatta_76_1   (Rhesus monkey)   7 7
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   9 9
Otolemur_garnettii_76_3   (Small-eared galago)   4 4
Microcebus_murinus_76_1   (Gray mouse lemur)   4 4
Rattus_norvegicus_76_5.0   (Norway rat)   6 6
Mus_musculus_76_38   (House mouse)   10 10
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6 4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3 3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   4 4
Cavia_porcellus_76_3   (Domestic guinea pig)   4 4
Oryctolagus_cuniculus_76_2   (Rabbit)   3 3
Ochotona_princeps_76   (American pika)   5 4
Tupaia_belangeri_76   (Northern tree shrew)   5 4
Sus_scrofa_76_10.2   (Pig)   5 5
Bos_taurus_76_3.1   (Cattle)   4 4
Ovis_aries_76_3.1   (Sheep)   5 5
Vicugna_pacos_76_1   (Alpaca)   4 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   4 4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   4 4
Ailuropoda_melanoleuca_76_1   (Giant panda)   5 5
Canis_familiaris_76_3.1   (Dog)   6 6
Felis_catus_76_6.2   (Domestic cat)   4 4
Equus_caballus_76_2   (Horse)   5 5
Myotis_lucifugus_76_2.0   (Little brown bat)   5 5
Pteropus_vampyrus_76_1   (Large flying fox)   5 4
Sorex_araneus_76_1   (European shrew)   3 3
Erinaceus_europaeus_76   (Western European hedgehog)   3 3
Procavia_capensis_76_1   (Cape rock hyrax)   5 4
Loxodonta_africana_76_3   (African savanna elephant)   6 6
Echinops_telfairi_76   (Small Madagascar hedgehog)   3 3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6 6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   5 4
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   6 6
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4 4
Ornithorhynchus_anatinus_76_5   (Platypus)   3 3
Saccoglossus_kowalevskii_v3.0 4 4
Petromyzon_marinus_76_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_76_2   (Turkey)   4 4
Gallus_gallus_76_4   (Chicken)   6 6
Anas_platyrhynchos_76_1.0   (Mallard)   3 3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3 3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   6 6
Anolis_carolinensis_76_2.0   (Green anole)   4 4
Xenopus_laevis_   (African clawed frog)   7 7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   4 4
Latimeria_chalumnae_76_1   (Coelacanth)   5 5
Lepisosteus_oculatus_76   (Spotted gar)   5 5
Gadus_morhua_76_1   (Atlantic cod)   6 5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   8 8
Takifugu_rubripes_76_4   (Torafugu)   18 18
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   5 5
Oryzias_latipes_76_1   (Japanese medaka)   4 4
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   5 5
Poecilia_formosa_76   (Amazon molly)   5 5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   9 9
Astyanax_mexicanus_76   (Mexican tetra)   10 10
Danio_rerio_76_9   (Zebrafish)   5 5
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_76   (Vase tunicate)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5 5
Adineta_vaga 4 4
Octopus_bimaculoides_280 3 3
Crassostrea_gigas_22   (Pacific oyster)   2 2
Lottia_gigantea_   (Owl limpet)   2 2
Helobdella_robusta_ 4 4
Capitella_sp._I_ 1 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 2
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   11 11
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 3
Linepithema_humile_v1.1   (Argentine ant)   3 3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 3 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 3
Lucilia_cuprina   (Australian sheep blowfly)   1 1
Drosophila_grimshawi_1.3 2 2
Drosophila_willistoni_1.3 2 2
Drosophila_pseudoobscura_2.13 2 2
Drosophila_persimilis_1.3 1 1
Drosophila_suzukii 2 2
Drosophila_yakuba_1.3 2 2
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 1 1
Drosophila_melanogaster_76_5   (Fruit fly)   11 11
Drosophila_erecta_1.3 2 2
Drosophila_ananassae_1.3 2 2
Drosophila_virilis_1.2 2 2
Drosophila_mojavensis_1.3 2 2
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4 4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2 2
Anopheles_darlingi_22   (American malaria mosquito)   3 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   2 2
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   2 2
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   2 2
Strigamia_maritima_22 2 2
Sarcoptes_scabiei 3 3
Tetranychus_urticae_   (Two-spotted spider mite)   2 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Pristionchus_pacificus_ 1 1
Meloidogyne_incognita_   (Southern root-knot nematode)   2 2
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3 3
Caenorhabditis_japonica_ 1 1
Caenorhabditis_brenneri_ 4 4
Caenorhabditis_remanei_ 2 2
Caenorhabditis_elegans_76_235   (Roundworm)   3 3
Caenorhabditis_briggsae_2 3 3
Trichinella_spiralis_22 4 4
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 2 2
Mnemiopsis_leidyi   (Sea walnut)   2 2
Acropora_digitifera_v1.0 3 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   1 1
Hydra_vulgaris 3 3
Trichoplax_adhaerens_ 2 2
Proterospongia_sp._ATCC_50818_ 1 1
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 1 1
Malassezia_globosa_CBS_7966_ 2 2
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_virens_Gv29-8_ 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Septoria_musiva_v1.0 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Pichia_pastoris_GS115_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Allomyces_macrogynus_ATCC_38327_ 1 1
Citrus_clementina_v165 1 1
Citrus_sinensis_v154   (Sweet orange)   1 1
Manihot_esculenta_v147   (Cassava)   1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Ostreococcus_sp._RCC809_ 1 1
Giardia_lamblia_2.3 1 1
Trypanosoma_vivax_ 3 3
Trypanosoma_cruzi_strain_CL_Brener 2 2
Phytophthora_sojae_1.1 2 1
Thalassiosira_pseudonana_CCMP1335 1 1
Neospora_caninum 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1
Guillardia_theta_CCMP2712_v1.0_ 1 1
Thermosediminibacter_oceani_DSM_16646 1 1
Nitrosomonas_sp._Is79A3 1 1
Alcanivorax_borkumensis_SK2 1 1
Pseudomonas_sp._UW4 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2 2
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   10 10
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3 3
Neospora_caninum_Nc-Liverpool_6.2 1 1
Chroococcidiopsis_thermalis_PCC_7203 1 1
Helicobacter_pylori_Shi169 1 1
Helicobacter_pylori_XZ274 1 1
Helicobacter_pylori_Sat464 1 1
Helicobacter_pylori_Cuz20 1 1
Helicobacter_pylori_v225d 1 1
Helicobacter_pylori_Shi470 1 1
Natronomonas_moolapensis_8.8.11 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   4 4
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4 4
Gorilla_gorilla_69_3.1   (Western gorilla)   4 4
Pongo_abelii_69_2   (Sumatran orangutan)   4 4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4 4
Macaca_mulatta_69_1   (Rhesus monkey)   4 4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   4 4
Otolemur_garnettii_69_3   (Small-eared galago)   4 4
Microcebus_murinus_69_1   (Gray mouse lemur)   4 4
Rattus_norvegicus_69_3.4   (Norway rat)   4 4
Mus_musculus_69_38   (House mouse)   4 4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6 4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 3
Cavia_porcellus_69_3   (Domestic guinea pig)   4 4
Oryctolagus_cuniculus_69_2   (Rabbit)   3 3
Ochotona_princeps_69   (American pika)   5 4
Tupaia_belangeri_69   (Northern tree shrew)   5 4
Sus_scrofa_69_10.2   (Pig)   5 5
Bos_taurus_69_3.1   (Cattle)   4 4
Vicugna_pacos_69_1   (Alpaca)   4 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   4 4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   4 4
Ailuropoda_melanoleuca_69_1   (Giant panda)   4 4
Canis_familiaris_69_3.1   (Dog)   4 4
Felis_catus_69   (Domestic cat)   4 4
Equus_caballus_69_2   (Horse)   4 4
Myotis_lucifugus_69_2.0   (Little brown bat)   5 5
Pteropus_vampyrus_69_1   (Large flying fox)   5 4
Sorex_araneus_69_1   (European shrew)   3 3
Erinaceus_europaeus_69   (Western European hedgehog)   3 3
Procavia_capensis_69_1   (Cape rock hyrax)   5 4
Loxodonta_africana_69_3   (African savanna elephant)   4 4
Echinops_telfairi_69   (Small Madagascar hedgehog)   3 3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   5 4
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   4 4
Ornithorhynchus_anatinus_69_5   (Platypus)   3 3
Petromyzon_marinus_69_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_69_2   (Turkey)   4 4
Gallus_gallus_69_2   (Chicken)   4 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2 2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   4 4
Anolis_carolinensis_69_2.0   (Green anole)   4 4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   4 4
Latimeria_chalumnae_69_1   (Coelacanth)   5 5
Gadus_morhua_69_1   (Atlantic cod)   6 5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5 5
Takifugu_rubripes_69_4   (Torafugu)   5 5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5 5
Oryzias_latipes_69_1   (Japanese medaka)   4 4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   5 5
Oreochromis_niloticus_69_1.0   (Nile tilapia)   5 5
Danio_rerio_69_9   (Zebrafish)   5 5
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   2 2
Drosophila_melanogaster_69_5   (Fruit fly)   3 3
Caenorhabditis_elegans_69_215   (Roundworm)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   19 19
Homo_sapiens__(NCBI_version)   (Human)   8 8
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   4 4
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
TargetDB__(Targets) 5 5
STRING_v9.0.5_(STRING) 162 161
Protozoadb_2010_08_(Protozoadb) 7 7
Uniprot_2018_03_genome 1985 1970
NCBI_2017_08_genome 3223 3213
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 5 5
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 5 5

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