SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Variable surface antigen VlsE superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Variable surface antigen VlsE domain in that genome.

Complete genomes
Genome     Number   Proteins
Borrelia_afzelii_PKo 4 3
Borrelia_burgdorferi_B31 1 1
Borrelia_recurrentis_A1 18 17
Borrelia_duttonii_Ly 68 68
Borrelia_crocidurae_str._Achema 156 156
Borrelia_hermsii_DAH 18 18
Halalkalicoccus_jeotgali_B3 1 1

Strains
Genome     Number   Proteins
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 1 1
Lactococcus_lactis_subsp._lactis_Il1403 1 1
Lactococcus_lactis_subsp._cremoris_A76 1 1
Borrelia_valaisiana_VS116 5 3
Borrelia_afzelii_PKo 4 3
Borrelia_burgdorferi_JD1 2 2

Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 429 338
STRING_v9.0.5_(STRING) 95 88
PDB_chains_(SCOP_1.75)_(PDB) 1 1
NCBI_2017_08_genome 1425 1334
Uniprot_2018_03_genome 2971 2889
UniProt__viral_sequences_(Viral) 1 1
NCBI_viral_sequences_(Viral) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 4 4
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 8 8

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