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Domain combinations for Cullin repeat-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Cullin repeat-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   59 59
Pan_troglodytes_76_2.1.4   (Chimpanzee)   13 13
Gorilla_gorilla_76_3.1   (Western gorilla)   13 13
Pongo_abelii_76_2   (Sumatran orangutan)   11 11
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14 13
Papio_anubis_76   (Olive baboon)   14 14
Macaca_mulatta_76_1   (Rhesus monkey)   22 22
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   24 24
Otolemur_garnettii_76_3   (Small-eared galago)   12 12
Microcebus_murinus_76_1   (Gray mouse lemur)   13 11
Rattus_norvegicus_76_5.0   (Norway rat)   13 13
Mus_musculus_76_38   (House mouse)   35 35
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   13 11
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   13 13
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   11 11
Cavia_porcellus_76_3   (Domestic guinea pig)   11 11
Oryctolagus_cuniculus_76_2   (Rabbit)   14 14
Ochotona_princeps_76   (American pika)   10 10
Tupaia_belangeri_76   (Northern tree shrew)   10 9
Sus_scrofa_76_10.2   (Pig)   14 14
Bos_taurus_76_3.1   (Cattle)   13 13
Ovis_aries_76_3.1   (Sheep)   12 12
Vicugna_pacos_76_1   (Alpaca)   7 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   12 10
Mustela_putorius_furo_76_1.0   (Domestic ferret)   12 12
Ailuropoda_melanoleuca_76_1   (Giant panda)   13 13
Canis_familiaris_76_3.1   (Dog)   13 13
Felis_catus_76_6.2   (Domestic cat)   14 14
Equus_caballus_76_2   (Horse)   13 13
Myotis_lucifugus_76_2.0   (Little brown bat)   18 17
Pteropus_vampyrus_76_1   (Large flying fox)   14 12
Sorex_araneus_76_1   (European shrew)   8 7
Erinaceus_europaeus_76   (Western European hedgehog)   11 8
Procavia_capensis_76_1   (Cape rock hyrax)   13 10
Loxodonta_africana_76_3   (African savanna elephant)   12 12
Echinops_telfairi_76   (Small Madagascar hedgehog)   18 13
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   12 12
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9 8
Macropus_eugenii_76_1.0   (Tammar wallaby)   14 10
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   13 13
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   13 13
Ornithorhynchus_anatinus_76_5   (Platypus)   13 13
Saccoglossus_kowalevskii_v3.0 16 16
Petromyzon_marinus_76_7.0   (Sea lamprey)   9 9
Meleagris_gallopavo_76_2   (Turkey)   13 13
Gallus_gallus_76_4   (Chicken)   15 15
Anas_platyrhynchos_76_1.0   (Mallard)   13 13
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   14 14
Ficedula_albicollis_76_1.0   (Collared flycatcher)   12 12
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   16 16
Anolis_carolinensis_76_2.0   (Green anole)   14 14
Xenopus_laevis_   (African clawed frog)   30 30
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   16 15
Latimeria_chalumnae_76_1   (Coelacanth)   16 16
Lepisosteus_oculatus_76   (Spotted gar)   15 15
Gadus_morhua_76_1   (Atlantic cod)   15 15
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   21 21
Takifugu_rubripes_76_4   (Torafugu)   38 38
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   19 19
Oryzias_latipes_76_1   (Japanese medaka)   16 16
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   15 15
Poecilia_formosa_76   (Amazon molly)   17 17
Oreochromis_niloticus_76_1.0   (Nile tilapia)   16 16
Astyanax_mexicanus_76   (Mexican tetra)   14 14
Danio_rerio_76_9   (Zebrafish)   30 30
Oikopleura_dioica 11 11
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   33 33
Ciona_intestinalis_76   (Vase tunicate)   9 9
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   14 14
Adineta_vaga 46 45
Octopus_bimaculoides_280 13 13
Crassostrea_gigas_22   (Pacific oyster)   13 12
Lottia_gigantea_   (Owl limpet)   9 9
Helobdella_robusta_ 11 10
Capitella_sp._I_ 10 10
Danaus_plexippus_OGS1.0   (Monarch butterfly)   11 10
Heliconius_melpomene_   (Postman butterfly)   11 11
Bombyx_mori_   (Domestic silkworm)   8 7
Nasonia_vitripennis_   (Jewel wasp)   9 9
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   13 13
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   8 8
Linepithema_humile_v1.1   (Argentine ant)   10 10
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   8 8
Solenopsis_invicta_v.2.2.3   (Red fire ant)   9 9
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   9 9
Atta_cephalotes_v1.1 8 8
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9 9
Lucilia_cuprina   (Australian sheep blowfly)   10 9
Drosophila_grimshawi_1.3 9 9
Drosophila_willistoni_1.3 9 9
Drosophila_pseudoobscura_2.13 10 9
Drosophila_persimilis_1.3 7 7
Drosophila_suzukii 11 10
Drosophila_yakuba_1.3 10 10
Drosophila_simulans_1.3 8 8
Drosophila_sechellia_1.3 12 11
Drosophila_melanogaster_76_5   (Fruit fly)   19 19
Drosophila_erecta_1.3 10 10
Drosophila_ananassae_1.3 10 10
Drosophila_virilis_1.2 9 9
Drosophila_mojavensis_1.3 9 9
Megaselia_scalaris_22 8 8
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   12 12
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   7 7
Anopheles_darlingi_22   (American malaria mosquito)   10 10
Anopheles_gambiae_49_3j   (African malaria mosquito)   8 8
Tribolium_castaneum_3.0   (Red flour beetle)   9 9
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   9 9
Acyrthosiphon_pisum_   (Pea aphid)   11 11
Rhodnius_prolixus_22 11 11
Daphnia_pulex_   (Common water flea)   15 15
Strigamia_maritima_22 21 17
Sarcoptes_scabiei 10 9
Tetranychus_urticae_   (Two-spotted spider mite)   16 16
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8 8
Pristionchus_pacificus_ 8 7
Meloidogyne_incognita_   (Southern root-knot nematode)   15 15
Meloidogyne_hapla_ 5 5
Onchocerca_volvulus_22 11 11
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   17 17
Caenorhabditis_japonica_ 8 8
Caenorhabditis_brenneri_ 10 10
Caenorhabditis_remanei_ 12 12
Caenorhabditis_elegans_76_235   (Roundworm)   14 14
Caenorhabditis_briggsae_2 10 10
Trichinella_spiralis_22 8 8
Hymenolepis_microstoma_ 12 12
Echinococcus_multilocularis_ 9 9
Echinococcus_granulosus_ 10 10
Taenia_solium_   (Pork tapeworm)   10 10
Schistosoma_mansoni_ 14 14
Mnemiopsis_leidyi   (Sea walnut)   9 8
Thelohanellus_kitauei 7 7
Acropora_digitifera_v1.0 10 10
Nematostella_vectensis_1.0   (Starlet sea anemone)   19 18
Hydra_vulgaris 12 11
Amphimedon_queenslandica 14 14
Trichoplax_adhaerens_ 12 12
Proterospongia_sp._ATCC_50818_ 6 6
Monosiga_brevicollis_ 8 8
Sphaeroforma_arctica_JP610_ 11 11
Capsaspora_owczarzaki_ATCC_30864_ 9 9
Conidiobolus_coronatus_NRRL28638_v1.0 5 5
Mortierella_verticillata_NRRL_6337_ 8 8
Phycomyces_blakesleeanus_ 10 10
Rhizopus_oryzae_RA_99-880_ 9 9
Mucor_circinelloides_ 9 9
Rhizomucor_miehei_CAU432_ 11 11
Malassezia_globosa_CBS_7966_ 12 12
Sporisorium_reilianum_22 5 5
Ustilago_maydis_ 5 5
Mixia_osmundae_IAM_14324_v1.0 6 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 5 5
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 7 7
Melampsora_laricis-populina_ 5 5
Rhodotorula_graminis_WP1_v1.0 5 5
Sporobolomyces_roseus_IAM_13481_ 6 6
Microbotryum_violaceum_22 6 6
Wallemia_sebi_v1.0 6 6
Sphaerobolus_stellatus_v1.0 8 8
Piloderma_croceum_F_1598_v1.0 9 9
Serpula_lacrymans_var._lacrymans_S7.9_ 9 9
Coniophora_puteana 8 8
Hydnomerulius_pinastri_v2.0 12 12
Paxillus_rubicundulus_Ve08.2h10_v1.0 7 7
Pisolithus_microcarpus_441_v1.0 12 12
Pisolithus_tinctorius_Marx_270_v1.0 7 7
Scleroderma_citrinum_Foug_A_v1.0 11 11
Coprinopsis_cinerea_okayama7_130_v3 8 8
Pleurotus_ostreatus_   (Oyster mushroom)   7 7
Amanita_thiersii_Skay4041_v1.0 7 7
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6 6
Galerina_marginata_v1.0 8 8
Hebeloma_cylindrosporum_h7_v2.0 9 9
Laccaria_bicolor_S238N-H82_ 16 16
Agaricus_bisporus_var._bisporus_ 6 6
Schizophyllum_commune_ 8 8
Stereum_hirsutum_FP-91666_SS1__v1.0 9 9
Heterobasidion_annosum_ 8 7
Gloeophyllum_trabeumv1.0 7 7
Punctularia_strigosozonata_v1.0 7 7
Sebacina_vermifera_MAFF_305830_v1.0 8 8
Fomitiporia_mediterranea_v1.0 7 7
Tulasnella_calospora_AL13/4D_v1.0 9 9
Postia_placenta_ 14 14
Wolfiporia_cocos_MD-104_SS10__v1.0 8 8
Fomitopsis_pinicolav1.0 9 9
Fomitopsis_pinicola_FP-58527_SS1_v3.0 9 9
Phanerochaete_chrysosporium_RP-78_2.1 8 8
Dichomitus_squalens 7 7
Trametes_versicolor_v1.0 9 9
Tremella_mesenterica_   (Witches' butter)   5 5
Daldinia_eschscholzii_EC12_v1.0 5 5
Apiospora_montagnei_NRRL_25634_v1.0 5 5
Magnaporthe_poae_ATCC_64411_22 6 6
Magnaporthe_grisea_70-15_ 5 5
Podospora_anserina_ 5 5
Sporotrichum_thermophile_ATCC_42464_ 5 5
Thielavia_terrestris_NRRL_8126_ 5 5
Chaetomium_globosum_CBS_148.51_ 5 5
Neurospora_tetrasperma_ 5 5
Neurospora_discreta_FGSC_8579_ 5 5
Neurospora_crassa_OR74A_ 5 5
Cryphonectria_parasitica_   (Chestnut blight fungus)   7 7
Verticillium_albo-atrum_VaMs.102_ 5 5
Verticillium_dahliae_VdLs.17_ 5 5
Acremonium_alcalophilumv_1.0 6 6
Glomerella_graminicola_22 5 5
Fusarium_graminearum_ 7 7
Nectria_haematococca_mpVI_ 5 5
Fusarium_oxysporum_f._sp._lycopersici_4286_ 5 5
Fusarium_verticillioides_7600_ 5 5
Trichoderma_asperellum_CBS_433.97_v1.0 5 5
Trichoderma_atroviride_ 5 5
Trichoderma_citrinoviride_v1.0 5 5
Trichoderma_reesei_1.2 5 5
Trichoderma_virens_Gv29-8_ 5 5
Trichoderma_longibrachiatum_ATCC_18648_v1.0 5 5
Trichoderma_harzianum_CBS_226.95_v1.0 5 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   5 5
Botrytis_cinerea_B05.10_ 6 6
Sclerotinia_sclerotiorum_ 5 5
Blumeria_graminis_22 5 5
Didymella_exigua_CBS_183.55_v1.0 5 5
Leptosphaeria_maculans_22 5 5
Setosphaeria_turcica_v1.0 5 5
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6 6
Cochliobolus_victoriae_FI3_v1.0 6 6
Cochliobolus_carbonum_26-R-13_v1.0 5 5
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5 5
Alternaria_brassicicola_ 4 4
Cochliobolus_lunatus_m118_v2.0 5 5
Pyrenophora_teres_f._teres_22 5 5
Pyrenophora_tritici-repentis_ 5 5
Stagonospora_nodorum_ 6 6
Mycosphaerella_graminicola_IPO323_ 5 5
Zasmidium_cellare_ATCC_36951_v1.0 5 5
Dothistroma_septosporum 5 5
Septoria_musiva_v1.0 5 5
Mycosphaerella_fijiensis_CIRAD86_ 5 5
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 6 6
Paracoccidioides_brasiliensis_Pb18_ 5 5
Coccidioides_posadasii_RMSCC_3488_ 6 6
Coccidioides_immitis_RS_ 6 6
Ajellomyces_dermatitidis_SLH14081_ 5 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 5 5
Microsporum_canis_CBS_113480_ 5 5
Trichophyton_equinum_CBS_127.97_ 5 5
Trichophyton_verrucosum_HKI_0517_ 5 5
Arthroderma_benhamiae_CBS_112371_ 5 5
Trichophyton_tonsurans_CBS_112818_ 5 5
Trichophyton_rubrum_CBS_118892_ 5 5
Uncinocarpus_reesii_1704_ 6 6
Aspergillus_zonatus_v1.0 5 5
Penicillium_chrysogenum_Wisconsin_54-1255_ 5 5
Penicillium_chrysogenum_v1.0 5 5
Aspergillus_acidus_v1.0 5 5
Aspergillus_fumigatus_Af293 5 5
Aspergillus_brasiliensis_v1.0 5 5
Aspergillus_nidulans_FGSC_A4_ 5 5
Aspergillus_sydowii_v1.0 5 5
Aspergillus_versicolor_v1.0 5 5
Aspergillus_glaucus 5 5
Aspergillus_carbonarius_ITEM_5010_ 5 5
Neosartorya_fischeri_NRRL_181_ 5 5
Aspergillus_terreus_NIH2624_ 5 5
Aspergillus_tubingensis_v1.0 5 5
Aspergillus_wentii_v1.0 5 5
Aspergillus_oryzae_RIB40_ 5 5
Aspergillus_niger_22 5 5
Aspergillus_niger_ATCC_1015_ 2 2
Aspergillus_flavus_NRRL3357_ 5 5
Aspergillus_clavatus_NRRL_1_ 5 5
Penicillium_marneffei_ATCC_18224_ 5 5
Tuber_melanosporum_Mel28_22 5 5
Tuber_melanosporum_Vittad_   (Perigord truffle)   5 5
Hansenula_polymorpha_v2.0 6 6
Dekkera_bruxellensis_CBS_2499_v2.0 4 4
Pichia_membranifaciensv1.0 4 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5 5
Candida_dubliniensis_CD36_ 5 5
Candida_tropicalis_MYA-3404_ 6 6
Candida_parapsilosis_ 6 6
Candida_albicans_SC5314 5 5
Lodderomyces_elongisporus_NRRL_YB-4239_ 6 6
Babjeviella_inositovora_NRRL_Y-12698_v1.0 5 5
Pichia_stipitis_CBS_6054_ 5 5
Candida_guilliermondii_ATCC_6260_ 5 5
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5 5
Debaromyces_hansenii 4 4
Wickerhamomyces_anomalus 5 5
Pichia_pastoris_GS115_ 6 6
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 4 4
Yarrowia_lipolytica_CLIB122 6 6
Candida_lusitaniae_ATCC_42720_ 5 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5 5
Vanderwaltozyma_polyspora_DSM_70294_ 5 5
Candida_glabrata_CBS138 5 5
Kluyveromyces_thermotolerans_CBS_6340 4 4
Lachancea_kluyveri_ 6 6
Kluyveromyces_waltii 4 4
Ashbya_gossypii_ATCC_10895_ 4 4
Zygosaccharomyces_rouxii_ 4 4
Saccharomyces_mikatae_MIT 4 4
Saccharomyces_paradoxus_MIT 4 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4 4
Saccharomyces_bayanus_MIT 4 4
Kluyveromyces_lactis 5 5
Schizosaccharomyces_cryophilus_OY26_22 6 6
Schizosaccharomyces_octosporus_yFS286_ 7 7
Schizosaccharomyces_japonicus_yFS275_ 6 6
Schizosaccharomyces_pombe   (Fission yeast)   6 6
Catenaria_anguillulae_PL171_v1.0 7 7
Allomyces_macrogynus_ATCC_38327_ 13 13
Spizellomyces_punctatus_DAOM_BR117_ 8 8
Dictyostelium_discoideum 11 11
Dictyostelium_purpureum_ 11 11
Entamoeba_dispar_1.2 9 9
Entamoeba_invadens_1.2 10 10
Entamoeba_histolytica_1 9 9
Selaginella_moellendorffii_ 23 23
Pinus_taeda   (Loblolly pine)   136 121
Picea_abies   (Norway spruce)   32 28
Eucalyptus_grandis_v201   (Rose gum)   58 58
Theobroma_cacao_B97-61/B2_v1   (Cacao)   32 32
Gossypium_raimondii_v221 105 105
Citrus_clementina_v165 43 43
Citrus_sinensis_v154   (Sweet orange)   64 64
Thellungiella_halophila_v173 43 43
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   60 60
Capsella_rubella_v183 42 42
Arabidopsis_lyrata_   (Lyrate rockcress)   50 49
Arabidopsis_thaliana_10   (Thale cress)   50 50
Carica_papaya_   (Papaya)   24 24
Medicago_truncatula_   (Barrel medic)   90 87
Phaseolus_vulgaris_v186   (French bean)   41 41
Glycine_max_v109   (Soybean)   84 83
Cucumis_sativus_v122   (Cucumber)   33 33
Fragaria_vesca_   (Wild strawberry)   40 39
Malus_domestica_v196   (Apple)   84 82
Prunus_persica_v139   (Peach)   35 34
Linum_usitatissimum_v200   (Flax)   63 63
Manihot_esculenta_v147   (Cassava)   50 50
Populus_trichocarpa_v156   (Black cottonwood)   68 63
Vitis_vinifera_   (Wine grape)   27 26
Mimulus_guttatus_v140   (Spotted monkey flower)   45 43
Solanum_lycopersicum_v.2.3   (Tomato)   48 48
Solanum_tuberosum_   (Potato)   50 50
Actinidia_chinensis_Hongyang_ 65 64
Aquilegia_coerulea_v195 49 49
Triticum_urartu_22 59 56
Triticum_aestivum_22   (Bread wheat)   110 109
Aegilops_tauschii_22 53 51
Brachypodium_distachyon_   (Stiff brome)   43 43
Oryza_barthii_22   (African wild rice)   73 73
Oryza_meridionalis_22 71 68
Oryza_glumaepatula_22 83 79
Oryza_glaberrima   (African rice)   55 55
Oryza_punctata_22 60 56
Oryza_nivara_22 85 84
Oryza_brachyantha_22   (Malo sina)   43 43
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   93 93
Oryza_sativa_v193   (Rice)   93 93
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   72 68
Panicum_virgatum_v202   (Switchgrass)   118 118
Setaria_italica_v164   (Foxtail millet)   59 59
Zea_mays_subsp._mays_   (Maize)   69 69
Zea_mays_v181   (Maize)   87 87
Sorghum_bicolor_   (Sorghum)   56 56
Musa_balbisiana   (Balbis banana)   49 48
Musa_acuminata_22   (Wild Malaysian banana)   49 47
Amborella_trichopoda_22 23 23
Physcomitrella_patens 32 32
Coccomyxa_subellipsoidea_sp._C-169_v2 7 7
Asterochloris_sp._Cgr/DA1pho_v1.0 6 6
Chlorella_variabilis_sp._NC64A_ 4 4
Chlorella_vulgaris_ 6 6
Volvox_carteri_f._nagariensis_ 5 5
Volvox_carteri_v199 5 5
Chlamydomonas_reinhardtii_4.0 6 6
Ostreococcus_sp._RCC809_ 4 4
Ostreococcus_lucimarinus_CCE9901_ 4 4
Ostreococcus_tauri_ 4 4
Bathycoccus_prasinos_ 5 4
Micromonas_sp._RCC299_ 5 5
Micromonas_pusilla_CCMP1545_v3.0 5 5
Cyanidioschyzon_merolae_strain_10D_22 4 4
Cyanidioschyzon_merolae 4 4
Porphyridium_purpureum_02_2012 6 6
Thecamonas_trahens_ATCC_50062_ 7 7
Bigelowiella_natans_CCMP2755_22 13 13
Giardia_lamblia_2.3 1 1
Cyanophora_paradoxa_ 8 8
Leishmania_mexicana_2.4 7 7
Leishmania_major_strain_Friedlin_ 8 8
Leishmania_infantum_JPCM5_2.4 7 7
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 7 7
Trypanosoma_vivax_ 7 6
Trypanosoma_cruzi_strain_CL_Brener 6 6
Trypanosoma_congolense_2.4 7 7
Trypanosoma_brucei_gambiense_v4.1 6 6
Trypanosoma_brucei_TREU927_v4.1 6 6
Ectocarpus_siliculosus 12 10
Aureococcus_anophagefferens_ 5 5
Albugo_laibachii_22 9 9
Pythium_iwayamai_DAOM_BR242034_22 9 9
Pythium_arrhenomanes_ATCC_12531_22 7 7
Pythium_ultimum_v1.7-2 9 8
Pythium_aphanidermatum_DAOM_BR444_22 7 7
Pythium_irregulare_DAOM_BR486_22 8 8
Pythium_vexans_DAOM_BR484_22 7 7
Phytophthora_ramorum_1.1   (Sudden oak death agent)   6 6
Phytophthora_sojae_1.1 7 7
Phytophthora_infestans_T30-4_ 8 8
Phytophthora_capsici_ 9 9
Hyaloperonospora_arabidopsidis_22 5 5
Phaeodactylum_tricornutumCCAP_1055/1 7 7
Fragilariopsis_cylindrus 7 7
Thalassiosira_pseudonana_CCMP1335 5 5
Perkinsus_marinus_ATCC_50983_ 8 8
Paramecium_tetraurelia_ 16 16
Tetrahymena_thermophila_SB210_1_ 8 8
Ichthyophthirius_multifiliis_strain_G5_ 6 6
Cryptosporidium_hominis 5 4
Cryptosporidium_muris 4 4
Cryptosporidium_parvum_Iowa_II 5 4
Neospora_caninum 3 3
Toxoplasma_gondii_VEG 3 3
Toxoplasma_gondii_ME49 4 4
Toxoplasma_gondii_GT1 4 4
Babesia_bovis_T2Bo_ 4 4
Theileria_parva__ 2 2
Theileria_annulata 2 2
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 2 2
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 2 2
Plasmodium_berghei_ANKA_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 8 8
Naegleria_gruberi_ 11 11
Trichomonas_vaginalis_ 13 13
Guillardia_theta_CCMP2712_v1.0_ 7 7
Emiliania_huxleyi_CCMP1516_ 11 11

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   24 24
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   19 19
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   9 9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   9 9
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   12 12
Cryptococcus_neoformans_var._grubii_H99_ 6 6
Cryptococcus_neoformans_B-3501A_ 8 8
Cryptococcus_neoformans_JEC21_ 8 8
Paracoccidioides_brasiliensis_Pb01_ 5 5
Paracoccidioides_brasiliensis_Pb03_ 5 5
Coccidioides_posadasii_str._Silveira_ 6 6
Coccidioides_immitis_RMSCC_3703_ 7 7
Coccidioides_immitis_RMSCC_2394_ 6 6
Coccidioides_immitis_H538.4_ 6 6
Ajellomyces_dermatitidis_ER-3_ 5 5
Histoplasma_capsulatum_H143 5 5
Histoplasma_capsulatum_H88 5 5
Histoplasma_capsulatum_G186AR 5 5
Aspergillus_fumigatus_A1163_ 5 5
Candida_albicans_WO-1_ 5 5
Saccharomyces_cerevisiae_UC5 2 2
Saccharomyces_cerevisiae_PW5 3 3
Saccharomyces_cerevisiae_FL100 2 2
Saccharomyces_cerevisiae_CLIB324 2 2
Saccharomyces_cerevisiae_CBS7960 4 4
Saccharomyces_cerevisiae_YJM269 4 4
Saccharomyces_cerevisiae_T7 4 4
Saccharomyces_cerevisiae_FostersB 2 2
Saccharomyces_cerevisiae_FostersO 2 2
Saccharomyces_cerevisiae_VL3 4 4
Saccharomyces_cerevisiae_Vin13 3 3
Saccharomyces_cerevisiae_LalvinQA23 2 2
Saccharomyces_cerevisiae_AWRI796 4 4
Saccharomyces_cerevisiae_Sigma1278b 4 4
Saccharomyces_cerevisiae_W303 4 4
Saccharomyces_cerevisiae_JAY291 4 4
Saccharomyces_cerevisiae_AWRI1631 2 2
Saccharomyces_cerevisiae_YPS163 3 3
Saccharomyces_cerevisiae_T73 2 2
Saccharomyces_cerevisiae_CLIB215 4 4
Saccharomyces_cerevisiae_YJM789_ 4 4
Saccharomyces_cerevisiae_YJM789 4 4
Saccharomyces_cerevisiae_RM11-1a 4 4
Saccharomyces_cerevisiae_RM11-1a_ 4 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4 4
Schizosaccharomyces_pombe_972h-_ 5 5
Batrachochytrium_dendrobatidis_JEL423_ 7 7
Batrachochytrium_dendrobatidis_JAM81_ 7 7
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   32 32
Hordeum_vulgare_22   (Domesticated barley)   69 69
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   80 79
Trypanosoma_brucei_Lister_427_v4.1 6 6
Neospora_caninum_Nc-Liverpool_6.2 3 3
Plasmodium_falciparum_HB3_ 2 2
Plasmodium_falciparum_Dd2_ 2 2
Oscillatoria_acuminata_PCC_6304 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1 1
Streptococcus_suis_98HAH33 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   13 13
Pan_troglodytes_69_2.1.4   (Chimpanzee)   13 13
Gorilla_gorilla_69_3.1   (Western gorilla)   12 12
Pongo_abelii_69_2   (Sumatran orangutan)   10 10
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   12 11
Macaca_mulatta_69_1   (Rhesus monkey)   12 12
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   11 11
Otolemur_garnettii_69_3   (Small-eared galago)   12 12
Microcebus_murinus_69_1   (Gray mouse lemur)   13 11
Rattus_norvegicus_69_3.4   (Norway rat)   13 13
Mus_musculus_69_38   (House mouse)   12 12
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   13 11
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   11 11
Cavia_porcellus_69_3   (Domestic guinea pig)   11 11
Oryctolagus_cuniculus_69_2   (Rabbit)   13 13
Ochotona_princeps_69   (American pika)   10 10
Tupaia_belangeri_69   (Northern tree shrew)   10 9
Sus_scrofa_69_10.2   (Pig)   14 14
Bos_taurus_69_3.1   (Cattle)   12 12
Vicugna_pacos_69_1   (Alpaca)   7 7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   12 10
Mustela_putorius_furo_69_1.0   (Domestic ferret)   12 12
Ailuropoda_melanoleuca_69_1   (Giant panda)   13 13
Canis_familiaris_69_3.1   (Dog)   11 11
Felis_catus_69   (Domestic cat)   13 10
Equus_caballus_69_2   (Horse)   10 10
Myotis_lucifugus_69_2.0   (Little brown bat)   18 17
Pteropus_vampyrus_69_1   (Large flying fox)   14 12
Sorex_araneus_69_1   (European shrew)   8 7
Erinaceus_europaeus_69   (Western European hedgehog)   11 8
Procavia_capensis_69_1   (Cape rock hyrax)   13 10
Loxodonta_africana_69_3   (African savanna elephant)   10 10
Echinops_telfairi_69   (Small Madagascar hedgehog)   18 13
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   9 7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9 8
Macropus_eugenii_69_1.0   (Tammar wallaby)   14 10
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   11 11
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   12 12
Ornithorhynchus_anatinus_69_5   (Platypus)   12 12
Petromyzon_marinus_69_7.0   (Sea lamprey)   8 8
Meleagris_gallopavo_69_2   (Turkey)   10 10
Gallus_gallus_69_2   (Chicken)   12 12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   14 14
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   13 13
Anolis_carolinensis_69_2.0   (Green anole)   14 14
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   12 11
Latimeria_chalumnae_69_1   (Coelacanth)   13 13
Gadus_morhua_69_1   (Atlantic cod)   15 15
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   19 19
Takifugu_rubripes_69_4   (Torafugu)   17 17
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   16 16
Oryzias_latipes_69_1   (Japanese medaka)   16 16
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   15 15
Oreochromis_niloticus_69_1.0   (Nile tilapia)   15 15
Danio_rerio_69_9   (Zebrafish)   17 17
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   8 8
Ciona_intestinalis_69   (Vase tunicate)   9 9
Drosophila_melanogaster_69_5   (Fruit fly)   10 10
Caenorhabditis_elegans_69_215   (Roundworm)   9 9
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4 4
Arabidopsis_thaliana_10   (Thale cress)   40 40

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   58 58
Homo_sapiens__(NCBI_version)   (Human)   24 24
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   12 12
Heliconius_numata__(Incomplete) 6 6
Loa_loa_v3.3_(Request)   (Eye worm)   9 9
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   16 16
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   9 9
Moniliophthora_perniciosa_FA553__(Genome_survey) 7 7
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 2 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   5 5
Lotus_japonicus__(Early_assembly) 44 44
Malus_x_domestica_(Duplicate)   (Apple)   84 82
Ricinus_communis__(Early_assembly)   (Castor bean)   32 32
Nicotiana_benthamiana_0.4.4_(Early_draft) 97 86
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   48 48
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   48 48
Phoenix_dactylifera__(Early_draft)   (Date palm)   24 22
Uniprot_2018_03_genome 17538 17323
PDB_chains_(SCOP_1.75)_(PDB) 6 6
Protein_Data_Bank_(all_PDB_sequenc) 49 49
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 115 115
TargetDB__(Targets) 44 44
Protozoadb_2010_08_(Protozoadb) 163 160
STRING_v9.0.5_(STRING) 1363 1350
NCBI_2017_08_genome 14116 14019

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