SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for V-region of surface antigen I/II (SA I/II, PAC) superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a V-region of surface antigen I/II (SA I/II, PAC) domain in that genome.

Complete genomes
Genome     Number   Proteins
Cryptobacterium_curtum_DSM_15641 2 2
Atopobium_parvulum_DSM_20469 1 1
Enterococcus_sp._7L76 1 1
Enterococcus_faecalis_62 2 2
Lactobacillus_kefiranofaciens_ZW3 1 1
Lactobacillus_salivarius_CECT_5713 2 2
Lactobacillus_amylovorus_GRL1118 3 3
Lactobacillus_brevis_ATCC_367 1 1
Lactobacillus_acidophilus_30SC 1 1
Lactococcus_lactis_subsp._cremoris_MG1363 1 1
Streptococcus_intermedius_JTH08 2 2
Streptococcus_gallolyticus_UCN34 2 2
Streptococcus_pasteurianus_ATCC_43144 1 1
Streptococcus_macedonicus_ACA-DC_198 2 2
Streptococcus_parasanguinis_ATCC_15912 2 1
Streptococcus_mutans_NN2025 2 2
Streptococcus_sanguinis_SK36 2 2
Streptococcus_salivarius_57.I 3 2
Streptococcus_oralis_Uo5 1 1
Streptococcus_gordonii_str._Challis_substr._CH1 2 2

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Strains
Genome     Number   Proteins
Enterococcus_faecalis_str._Symbioflor_1 1 1
Enterococcus_faecalis_V583 4 4
Lactobacillus_salivarius_UCC118 1 1
Lactobacillus_amylovorus_GRL_1112 1 1
Lactobacillus_reuteri_TD1 2 2
Lactobacillus_plantarum_16 2 2
Lactobacillus_brevis_KB290 1 1
Lactobacillus_acidophilus_La-14 1 1
Lactobacillus_acidophilus_NCFM 1 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1 1
Streptococcus_constellatus_subsp._pharyngis_C1050 1 1
Streptococcus_intermedius_B196 1 1
Streptococcus_intermedius_C270 1 1
Streptococcus_anginosus_C238 3 3
Streptococcus_anginosus_C1051 4 4
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 3 3
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1 1
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 1 1
Streptococcus_equi_subsp._zooepidemicus 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1 1
Streptococcus_oligofermentans_AS_1.3089 2 2
Streptococcus_parasanguinis_FW213 2 1
Streptococcus_agalactiae_09mas018883 1 1
Streptococcus_agalactiae_NEM316 1 1
Streptococcus_agalactiae_2603V/R 1 1
Streptococcus_mutans_GS-5 1 1
Streptococcus_mutans_LJ23 2 2
Streptococcus_mutans_UA159 2 2
Streptococcus_thermophilus_JIM_8232 1 1
Streptococcus_suis_T15 1 1
Streptococcus_suis_SC070731 1 1
Streptococcus_suis_D9 1 1
Streptococcus_suis_SS12 1 1
Streptococcus_suis_D12 2 2
Streptococcus_suis_JS14 1 1
Streptococcus_suis_BM407 2 2
Streptococcus_suis_SC84 1 1
Streptococcus_suis_98HAH33 1 1
Streptococcus_suis_05ZYH33 1 1
Streptococcus_salivarius_CCHSS3 3 2
Streptococcus_salivarius_JIM8777 5 3

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 16 16
Uniprot_2018_03_genome 1142 1028
PDB_chains_(SCOP_1.75)_(PDB) 1 1
NCBI_2017_08_genome 3881 3597
TargetDB__(Targets) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 8 8
Protein_Data_Bank_(all_PDB_sequenc) 10 10
STRING_v9.0.5_(STRING) 25 25

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