SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 3-carboxy-cis,cis-mucoante lactonizing enzyme superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a 3-carboxy-cis,cis-mucoante lactonizing enzyme domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   11 11
Pan_troglodytes_76_2.1.4   (Chimpanzee)   4 4
Gorilla_gorilla_76_3.1   (Western gorilla)   6 6
Pongo_abelii_76_2   (Sumatran orangutan)   4 4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4 4
Papio_anubis_76   (Olive baboon)   4 4
Macaca_mulatta_76_1   (Rhesus monkey)   8 8
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   10 10
Otolemur_garnettii_76_3   (Small-eared galago)   3 3
Microcebus_murinus_76_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_76_5.0   (Norway rat)   4 4
Mus_musculus_76_38   (House mouse)   9 9
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3 3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6 6
Cavia_porcellus_76_3   (Domestic guinea pig)   3 3
Oryctolagus_cuniculus_76_2   (Rabbit)   4 4
Ochotona_princeps_76   (American pika)   4 4
Tupaia_belangeri_76   (Northern tree shrew)   2 2
Sus_scrofa_76_10.2   (Pig)   2 2
Bos_taurus_76_3.1   (Cattle)   3 3
Ovis_aries_76_3.1   (Sheep)   4 4
Vicugna_pacos_76_1   (Alpaca)   3 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_76_1   (Giant panda)   4 4
Canis_familiaris_76_3.1   (Dog)   4 4
Felis_catus_76_6.2   (Domestic cat)   1 1
Equus_caballus_76_2   (Horse)   5 5
Myotis_lucifugus_76_2.0   (Little brown bat)   5 5
Pteropus_vampyrus_76_1   (Large flying fox)   2 2
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   3 3
Procavia_capensis_76_1   (Cape rock hyrax)   3 3
Loxodonta_africana_76_3   (African savanna elephant)   5 5
Echinops_telfairi_76   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   5 5
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   3 3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   6 6
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   5 5
Ornithorhynchus_anatinus_76_5   (Platypus)   4 4
Saccoglossus_kowalevskii_v3.0 5 5
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   6 6
Gallus_gallus_76_4   (Chicken)   12 12
Anas_platyrhynchos_76_1.0   (Mallard)   5 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4 4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3 3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3 3
Anolis_carolinensis_76_2.0   (Green anole)   7 7
Xenopus_laevis_   (African clawed frog)   11 11
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   6 6
Latimeria_chalumnae_76_1   (Coelacanth)   4 4
Lepisosteus_oculatus_76   (Spotted gar)   3 3
Gadus_morhua_76_1   (Atlantic cod)   3 3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2 2
Takifugu_rubripes_76_4   (Torafugu)   7 7
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   6 6
Oryzias_latipes_76_1   (Japanese medaka)   4 4
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3 3
Poecilia_formosa_76   (Amazon molly)   4 4
Oreochromis_niloticus_76_1.0   (Nile tilapia)   3 3
Astyanax_mexicanus_76   (Mexican tetra)   3 3
Danio_rerio_76_9   (Zebrafish)   6 6
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5 5
Ciona_intestinalis_76   (Vase tunicate)   3 3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   69 68
Adineta_vaga 10 10
Octopus_bimaculoides_280 3 3
Crassostrea_gigas_22   (Pacific oyster)   25 25
Lottia_gigantea_   (Owl limpet)   5 5
Helobdella_robusta_ 6 6
Capitella_sp._I_ 3 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   5 5
Heliconius_melpomene_   (Postman butterfly)   4 4
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   3 3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 3
Linepithema_humile_v1.1   (Argentine ant)   2 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Lucilia_cuprina   (Australian sheep blowfly)   1 1
Drosophila_grimshawi_1.3 1 1
Drosophila_willistoni_1.3 2 2
Drosophila_pseudoobscura_2.13 1 1
Drosophila_persimilis_1.3 1 1
Drosophila_suzukii 1 1
Drosophila_yakuba_1.3 2 2
Drosophila_simulans_1.3 1 1
Drosophila_melanogaster_76_5   (Fruit fly)   1 1
Drosophila_erecta_1.3 1 1
Drosophila_ananassae_1.3 4 4
Drosophila_virilis_1.2 2 2
Drosophila_mojavensis_1.3 1 1
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2 2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3 3
Anopheles_darlingi_22   (American malaria mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   4 4
Tribolium_castaneum_3.0   (Red flour beetle)   2 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   3 3
Rhodnius_prolixus_22 1 1
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Meloidogyne_incognita_   (Southern root-knot nematode)   3 3
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 1 1
Caenorhabditis_japonica_ 3 3
Caenorhabditis_brenneri_ 6 6
Caenorhabditis_remanei_ 3 3
Caenorhabditis_elegans_76_235   (Roundworm)   8 8
Caenorhabditis_briggsae_2 3 3
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   1 1
Mnemiopsis_leidyi   (Sea walnut)   3 3
Acropora_digitifera_v1.0 14 14
Nematostella_vectensis_1.0   (Starlet sea anemone)   5 5
Hydra_vulgaris 2 2
Amphimedon_queenslandica 5 5
Trichoplax_adhaerens_ 1 1
Monosiga_brevicollis_ 2 2
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 1 1
Sporisorium_reilianum_22 2 2
Ustilago_maydis_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1 1
Melampsora_laricis-populina_ 4 4
Sporobolomyces_roseus_IAM_13481_ 3 3
Microbotryum_violaceum_22 4 4
Sphaerobolus_stellatus_v1.0 9 9
Piloderma_croceum_F_1598_v1.0 4 4
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Coniophora_puteana 4 4
Hydnomerulius_pinastri_v2.0 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 3 3
Scleroderma_citrinum_Foug_A_v1.0 1 1
Coprinopsis_cinerea_okayama7_130_v3 2 2
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 4 4
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2 2
Galerina_marginata_v1.0 10 10
Hebeloma_cylindrosporum_h7_v2.0 3 3
Laccaria_bicolor_S238N-H82_ 3 3
Agaricus_bisporus_var._bisporus_ 1 1
Schizophyllum_commune_ 4 4
Stereum_hirsutum_FP-91666_SS1__v1.0 5 5
Heterobasidion_annosum_ 4 4
Gloeophyllum_trabeumv1.0 3 3
Punctularia_strigosozonata_v1.0 2 2
Sebacina_vermifera_MAFF_305830_v1.0 3 3
Fomitiporia_mediterranea_v1.0 4 4
Tulasnella_calospora_AL13/4D_v1.0 3 3
Postia_placenta_ 1 1
Wolfiporia_cocos_MD-104_SS10__v1.0 1 1
Fomitopsis_pinicolav1.0 1 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1 1
Phanerochaete_chrysosporium_RP-78_2.1 2 2
Dichomitus_squalens 3 3
Trametes_versicolor_v1.0 7 7
Tremella_mesenterica_   (Witches' butter)   2 2
Daldinia_eschscholzii_EC12_v1.0 4 4
Apiospora_montagnei_NRRL_25634_v1.0 6 6
Magnaporthe_poae_ATCC_64411_22 4 4
Magnaporthe_grisea_70-15_ 1 1
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 2 2
Thielavia_terrestris_NRRL_8126_ 3 2
Chaetomium_globosum_CBS_148.51_ 2 2
Neurospora_tetrasperma_ 7 7
Neurospora_discreta_FGSC_8579_ 5 5
Neurospora_crassa_OR74A_ 4 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 3 3
Acremonium_alcalophilumv_1.0 2 2
Glomerella_graminicola_22 3 3
Fusarium_graminearum_ 4 4
Nectria_haematococca_mpVI_ 6 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6 6
Fusarium_verticillioides_7600_ 7 7
Trichoderma_asperellum_CBS_433.97_v1.0 2 2
Trichoderma_atroviride_ 3 3
Trichoderma_citrinoviride_v1.0 4 4
Trichoderma_reesei_1.2 3 3
Trichoderma_virens_Gv29-8_ 4 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 3 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Botrytis_cinerea_B05.10_ 2 2
Sclerotinia_sclerotiorum_ 2 2
Didymella_exigua_CBS_183.55_v1.0 3 3
Leptosphaeria_maculans_22 2 2
Setosphaeria_turcica_v1.0 2 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 4 4
Cochliobolus_carbonum_26-R-13_v1.0 4 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3 3
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 3 3
Pyrenophora_teres_f._teres_22 4 4
Pyrenophora_tritici-repentis_ 3 3
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 3 3
Zasmidium_cellare_ATCC_36951_v1.0 4 4
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 3 3
Mycosphaerella_fijiensis_CIRAD86_ 3 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2 2
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2 2
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 2 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 2 2
Penicillium_chrysogenum_v1.0 2 2
Aspergillus_acidus_v1.0 5 5
Aspergillus_fumigatus_Af293 2 2
Aspergillus_brasiliensis_v1.0 3 3
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 4 4
Aspergillus_versicolor_v1.0 5 5
Aspergillus_glaucus 4 4
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 2 2
Aspergillus_terreus_NIH2624_ 4 4
Aspergillus_tubingensis_v1.0 3 3
Aspergillus_wentii_v1.0 2 2
Aspergillus_oryzae_RIB40_ 3 3
Aspergillus_niger_22 3 3
Aspergillus_niger_ATCC_1015_ 3 3
Aspergillus_flavus_NRRL3357_ 4 4
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 2 2
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tropicalis_MYA-3404_ 1 1
Candida_parapsilosis_ 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Wickerhamomyces_anomalus 2 2
Yarrowia_lipolytica_CLIB122 1 1
Candida_lusitaniae_ATCC_42720_ 1 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Spizellomyces_punctatus_DAOM_BR117_ 3 3
Entamoeba_dispar_1.2 2 2
Entamoeba_invadens_1.2 1 1
Entamoeba_histolytica_1 1 1
Selaginella_moellendorffii_ 6 6
Pinus_taeda   (Loblolly pine)   3 3
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 11 11
Citrus_clementina_v165 1 1
Citrus_sinensis_v154   (Sweet orange)   3 3
Thellungiella_halophila_v173 5 5
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   9 9
Capsella_rubella_v183 5 5
Arabidopsis_lyrata_   (Lyrate rockcress)   3 3
Arabidopsis_thaliana_10   (Thale cress)   6 6
Carica_papaya_   (Papaya)   1 1
Medicago_truncatula_   (Barrel medic)   7 7
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   8 8
Cucumis_sativus_v122   (Cucumber)   1 1
Fragaria_vesca_   (Wild strawberry)   5 5
Malus_domestica_v196   (Apple)   5 5
Prunus_persica_v139   (Peach)   4 4
Linum_usitatissimum_v200   (Flax)   4 4
Manihot_esculenta_v147   (Cassava)   3 3
Populus_trichocarpa_v156   (Black cottonwood)   2 2
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   3 3
Solanum_tuberosum_   (Potato)   1 1
Actinidia_chinensis_Hongyang_ 4 4
Aquilegia_coerulea_v195 5 5
Triticum_urartu_22 5 5
Triticum_aestivum_22   (Bread wheat)   3 3
Aegilops_tauschii_22 10 10
Brachypodium_distachyon_   (Stiff brome)   2 2
Oryza_barthii_22   (African wild rice)   2 2
Oryza_meridionalis_22 5 5
Oryza_glumaepatula_22 6 6
Oryza_glaberrima   (African rice)   4 4
Oryza_punctata_22 4 4
Oryza_nivara_22 4 4
Oryza_brachyantha_22   (Malo sina)   1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6 6
Oryza_sativa_v193   (Rice)   6 6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1 1
Panicum_virgatum_v202   (Switchgrass)   16 16
Setaria_italica_v164   (Foxtail millet)   9 9
Zea_mays_subsp._mays_   (Maize)   2 2
Zea_mays_v181   (Maize)   3 3
Sorghum_bicolor_   (Sorghum)   4 4
Musa_balbisiana   (Balbis banana)   3 3
Musa_acuminata_22   (Wild Malaysian banana)   4 4
Amborella_trichopoda_22 1 1
Physcomitrella_patens 1 1
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 2 2
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 2 2
Volvox_carteri_v199 2 2
Chlamydomonas_reinhardtii_4.0 9 9
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 3 3
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 2 2
Micromonas_pusilla_CCMP1545_v3.0 4 4
Porphyridium_purpureum_02_2012 2 2
Thecamonas_trahens_ATCC_50062_ 5 5
Bigelowiella_natans_CCMP2755_22 2 2
Cyanophora_paradoxa_ 5 5
Leishmania_major_strain_Friedlin_ 2 2
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 2 2
Trypanosoma_brucei_gambiense_v4.1 2 2
Trypanosoma_brucei_TREU927_v4.1 2 2
Aureococcus_anophagefferens_ 8 8
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 2 2
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_sojae_1.1 2 2
Phaeodactylum_tricornutumCCAP_1055/1 4 3
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 4 4
Perkinsus_marinus_ATCC_50983_ 1 1
Paramecium_tetraurelia_ 2 2
Tetrahymena_thermophila_SB210_1_ 17 17
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 5 5
Naegleria_gruberi_ 20 20
Trichomonas_vaginalis_ 4 4
Guillardia_theta_CCMP2712_v1.0_ 8 8
Emiliania_huxleyi_CCMP1516_ 4 4
Thermobaculum_terrenum_ATCC_BAA-798 1 1
Acaryochloris_marina_MBIC11017 1 1
Synechococcus_sp._PCC_6312 1 1
Microcoleus_sp._PCC_7113 1 1
Geitlerinema_sp._PCC_7407 1 1
Cyanothece_sp._PCC_8802 2 2
Gloeocapsa_sp._PCC_7428 3 3
Gloeobacter_violaceus_PCC_7421 3 3
Rivularia_sp._PCC_7116 1 1
Nostoc_sp._PCC_7107 4 4
Nostoc_punctiforme_PCC_73102 1 1
Nostoc_sp._PCC_7524 4 4
Anabaena_sp._90 1 1
Conexibacter_woesei_DSM_14684 3 3
Atopobium_parvulum_DSM_20469 1 1
Rubrobacter_xylanophilus_DSM_9941 1 1
Ilumatobacter_coccineus 1 1
Acidimicrobium_ferrooxidans_DSM_10331 2 2
Thermobispora_bispora_DSM_43833 2 2
Catenulispora_acidiphila_DSM_44928 1 1
Stackebrandtia_nassauensis_DSM_44728 2 2
Frankia_sp._EAN1pec 3 3
Frankia_alni_ACN14a 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 2 2
Thermomonospora_curvata_DSM_43183 1 1
Streptosporangium_roseum_DSM_43021 4 4
Kitasatospora_setae_KM-6054 3 3
Streptomyces_coelicolor_A3(2) 2 2
Streptomyces_sp._PAMC26508 4 4
Streptomyces_flavogriseus_ATCC_33331 4 4
Streptomyces_sp._SirexAA-E 2 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 2 2
Streptomyces_bingchenggensis_BCW-1 4 4
Streptomyces_violaceusniger_Tu_4113 4 4
Streptomyces_avermitilis_MA-4680 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_scabiei_87.22 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 5 5
Actinosynnema_mirum_DSM_43827 1 1
Saccharopolyspora_erythraea_NRRL_2338 4 4
Kribbella_flavida_DSM_17836 6 6
Nocardioides_sp._JS614 1 1
Microlunatus_phosphovorus_NM-1 1 1
Salinispora_arenicola_CNS-205 2 2
Salinispora_tropica_CNB-440 3 3
Verrucosispora_maris_AB-18-032 2 2
Micromonospora_sp._L5 3 3
Micromonospora_aurantiaca_ATCC_27029 5 5
Actinoplanes_sp._N902-109 5 5
Actinoplanes_sp._SE50/110 2 2
Actinoplanes_missouriensis_431 2 2
Tsukamurella_paurometabola_DSM_20162 1 1
Gordonia_polyisoprenivorans_VH2 1 1
Gordonia_bronchialis_DSM_43247 1 1
Rhodococcus_jostii_RHA1 1 1
Rhodococcus_equi_103S 1 1
Rhodococcus_opacus_B4 2 2
Nocardia_cyriacigeorgica_GUH-2 3 3
Mycobacterium_sp._JLS 1 1
Mycobacterium_vanbaalenii_PYR-1 1 1
Mycobacterium_rhodesiae_NBB3 1 1
Mycobacterium_chubuense_NBB4 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Mycobacterium_leprae_Br4923 1 1
Corynebacterium_resistens_DSM_45100 1 1
Corynebacterium_kroppenstedtii_DSM_44385 1 1
Corynebacterium_jeikeium_K411 1 1
Corynebacterium_variabile_DSM_44702 1 1
Corynebacterium_glutamicum_R 1 1
Sanguibacter_keddieii_DSM_10542 1 1
Kytococcus_sedentarius_DSM_20547 1 1
Isoptericola_variabilis_225 1 1
Arthrobacter_arilaitensis_Re117 1 1
Bifidobacterium_breve_ACS-071-V-Sch8b 1 1
Bifidobacterium_bifidum_S17 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Thermomicrobium_roseum_DSM_5159 2 2
Sphaerobacter_thermophilus_DSM_20745 1 1
Herpetosiphon_aurantiacus_DSM_785 1 1
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Chloroflexus_sp._MS-G 2 2
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aggregans_DSM_9485 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Truepera_radiovictrix_DSM_17093 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_maricopensis_DSM_21211 1 1
Meiothermus_ruber_DSM_1279 1 1
Thermus_sp._CCB_US3_UF1 1 1
Megamonas_hypermegale 1 1
Symbiobacterium_thermophilum_IAM_14863 1 1
Clostridium_clariflavum_DSM_19732 1 1
Thermaerobacter_marianensis_DSM_12885 1 1
butyrate-producing_bacterium_SS3/4 1 1
Desulfosporosinus_orientis_DSM_765 1 1
Desulfotomaculum_kuznetsovii_DSM_6115 1 1
Clostridium_sticklandii_DSM_519 1 1
Clostridium_phytofermentans_ISDg 2 2
Eubacterium_rectale_M104/1 1 1
Eubacterium_rectale_ATCC_33656 1 1
Roseburia_hominis_A2-183 2 2
Roseburia_intestinalis 1 1
Carboxydothermus_hydrogenoformans_Z-2901 2 2
Lactobacillus_buchneri_NRRL_B-30929 1 1
Lactobacillus_buchneri 1 1
Lactobacillus_brevis_ATCC_367 1 1
Kyrpidia_tusciae_DSM_2912 1 1
Solibacillus_silvestris_StLB046 1 1
Lysinibacillus_sphaericus_C3-41 1 1
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_weihenstephanensis_KBAB4 2 2
Bacillus_thuringiensis_str._Al_Hakam 1 1
Gemmatimonas_aurantiaca_T-27 2 2
Ignavibacterium_album_JCM_16511 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Chloroherpeton_thalassium_ATCC_35110 1 1
Prosthecochloris_aestuarii_DSM_271 1 1
Haliscomenobacter_hydrossis_DSM_1100 1 1
Saprospira_grandis_str._Lewin 1 1
Niastella_koreensis_GR20-10 5 4
Chitinophaga_pinensis_DSM_2588 2 2
Salinibacter_ruber_M8 1 1
Flexibacter_litoralis_DSM_6794 1 1
Belliella_baltica_DSM_15883 3 3
Cyclobacterium_marinum_DSM_745 2 2
Fibrella_aestuarina 3 3
Dyadobacter_fermentans_DSM_18053 1 1
Spirosoma_linguale_DSM_74 7 7
Runella_slithyformis_DSM_19594 3 3
Parabacteroides_distasonis_ATCC_8503 2 2
Tannerella_forsythia_ATCC_43037 3 3
Odoribacter_splanchnicus_DSM_20712 3 3
Bacteroides_vulgatus_ATCC_8482 1 1
Bacteroides_thetaiotaomicron_VPI-5482 3 3
Bacteroides_fragilis_YCH46 3 3
Pedobacter_saltans_DSM_12145 1 1
Solitalea_canadensis_DSM_3403 4 4
Pedobacter_heparinus_DSM_2366 2 2
Sphingobacterium_sp._21 1 1
Fluviicola_taffensis_DSM_16823 3 3
Owenweeksia_hongkongensis_DSM_17368 4 4
Zunongwangia_profunda_SM-A87 1 1
Gramella_forsetii_KT0803 2 2
Lacinutrix_sp._5H-3-7-4 1 1
Maribacter_sp._HTCC2170 1 1
Robiginitalea_biformata_HTCC2501 1 1
Croceibacter_atlanticus_HTCC2559 1 1
Aequorivita_sublithincola_DSM_14238 1 1
Zobellia_galactanivorans 3 3
Muricauda_ruestringensis_DSM_13258 1 1
Cellulophaga_algicola_DSM_14237 1 1
Flavobacteriaceae_bacterium_3519-10 1 1
Capnocytophaga_canimorsus_Cc5 1 1
Weeksella_virosa_DSM_16922 1 1
Flavobacterium_columnare_ATCC_49512 1 1
Flavobacterium_johnsoniae_UW101 2 2
Phycisphaera_mikurensis_NBRC_102666 2 2
Isosphaera_pallida_ATCC_43644 2 2
Planctomyces_brasiliensis_DSM_5305 3 3
Rhodopirellula_baltica_SH_1 2 2
Pirellula_staleyi_DSM_6068 1 1
Methylacidiphilum_infernorum_V4 1 1
Coraliomargarita_akajimensis_DSM_45221 2 2
Fretibacterium_fastidiosum 1 1
Turneriella_parva_DSM_21527 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Treponema_denticola_ATCC_35405 1 1
Thermodesulfatator_indicus_DSM_15286 1 1
Deferribacter_desulfuricans_SSM1 1 1
Marinitoga_piezophila_KA3 1 1
Mesotoga_prima_MesG1.Ag.4.2 2 2
Kosmotoga_olearia_TBF_19.5.1 1 1
Fervidobacterium_nodosum_Rt17-B1 1 1
Thermotoga_lettingae_TMO 1 1
Caldisericum_exile_AZM16c01 1 1
Candidatus_Chloracidobacterium_thermophilum_B 2 2
Candidatus_Solibacter_usitatus_Ellin6076 4 4
Granulicella_tundricola_MP5ACTX9 6 6
Granulicella_mallensis_MP5ACTX8 6 6
Candidatus_Koribacter_versatilis_Ellin345 4 4
Terriglobus_saanensis_SP1PR4 3 3
Terriglobus_roseus_DSM_18391 3 3
Acidobacterium_capsulatum_ATCC_51196 3 3
Candidatus_Nitrospira_defluvii 1 1
Leptospirillum_ferrooxidans_C2-3 2 2
Acidithiobacillus_caldus_SM-1 1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Desulfobacca_acetoxidans_DSM_11109 1 1
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfatibacillum_alkenivorans_AK-01 3 3
Desulfococcus_oleovorans_Hxd3 1 1
Desulfovibrio_piezophilus 1 1
Desulfovibrio_aespoeensis_Aspo-2 1 1
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_salexigens_DSM_2638 2 2
Geobacter_uraniireducens_Rf4 3 2
Geobacter_lovleyi_SZ 1 1
Geobacter_bemidjiensis_Bem 1 1
Babela_massiliensis 2 2
Haliangium_ochraceum_DSM_14365 5 5
Sorangium_cellulosum_'So_ce_56' 7 7
Anaeromyxobacter_sp._Fw109-5 1 1
Stigmatella_aurantiaca_DW4/3-1 3 3
Corallococcus_coralloides_DSM_2259 5 5
Myxococcus_xanthus_DK_1622 3 3
Myxococcus_fulvus_HW-1 3 3
Azoarcus_sp._KH32C 1 1
Aromatoleum_aromaticum_EbN1 1 1
Methylibium_petroleiphilum_PM1 1 1
Thiomonas_arsenitoxydans 1 1
Thiomonas_intermedia_K12 1 1
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_phymatum_STM815 2 2
Burkholderia_xenovorans_LB400 3 3
Ralstonia_eutropha_JMP134 1 1
Cupriavidus_taiwanensis_LMG_19424 1 1
Cupriavidus_necator_N-1 1 1
Ralstonia_eutropha_H16 1 1
Burkholderia_sp._RPE64 2 2
Burkholderia_sp._CCGE1002 4 4
Burkholderia_pseudomallei_1106a 1 1
Burkholderia_ambifaria_AMMD 3 3
Burkholderia_cenocepacia_HI2424 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_gladioli_BSR3 1 1
Burkholderia_glumae_BGR1 1 1
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 1 1
Rhodoferax_ferrireducens_T118 1 1
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 2 2
Bordetella_parapertussis_12822 1 1
Bordetella_bronchiseptica_RB50 1 1
Achromobacter_xylosoxidans 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Nitrosomonas_sp._Is79A3 2 2
Methylovorus_sp._MP688 1 1
Parvularcula_bermudensis_HTCC2503 1 1
Brevundimonas_subvibrioides_ATCC_15264 1 1
Caulobacter_sp._K31 2 2
Caulobacter_crescentus_NA1000 1 1
Phenylobacterium_zucineum_HLK1 1 1
Erythrobacter_litoralis_HTCC2594 1 1
Hyphomonas_neptunium_ATCC_15444 1 1
Dinoroseobacter_shibae_DFL_12 2 2
Phaeobacter_gallaeciensis_2.10 1 1
Pseudovibrio_sp._FO-BEG1 3 3
Jannaschia_sp._CCS1 1 1
Ruegeria_sp._TM1040 1 1
Ruegeria_pomeroyi_DSS-3 2 2
Roseobacter_litoralis_Och_149 1 1
Roseobacter_denitrificans_OCh_114 1 1
Rhodobacter_capsulatus_SB_1003 1 1
Paracoccus_denitrificans_PD1222 1 1
Tistrella_mobilis_KA081020-065 1 1
Azospirillum_brasilense_Sp245 1 1
Micavibrio_aeruginosavorus_ARL-13 1 1
Candidatus_Puniceispirillum_marinum_IMCC1322 1 1
Candidatus_Pelagibacter_sp._IMCC9063 2 2
Starkeya_novella_DSM_506 1 1
Azorhizobium_caulinodans_ORS_571 1 1
Methylobacterium_sp._4-46 1 1
Sinorhizobium_fredii_NGR234 1 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1 1
Agrobacterium_radiobacter_K84 1 1
Mesorhizobium_opportunistum_WSM2075 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 2 2
Mesorhizobium_loti_MAFF303099 1 1
Bradyrhizobium_japonicum_USDA_110 1 1
Bradyrhizobium_sp._ORS_278 1 1
Methylocystis_sp._SC2 1 1
Cellvibrio_japonicus_Ueda107 1 1
Aliivibrio_salmonicida_LFI1238 1 1
Vibrio_sp._Ex25 2 2
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Vibrio_splendidus_LGP32 1 1
Vibrio_anguillarum_775 1 1
Shewanella_loihica_PV-4 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_pealeana_ATCC_700345 2 2
Shewanella_woodyi_ATCC_51908 2 2
Shewanella_frigidimarina_NCIMB_400 1 1
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Glaciecola_nitratireducens_FR1064 3 3
Alteromonas_sp._SN2 1 1
Alteromonas_macleodii_str._'Deep_ecotype' 3 3
Hahella_chejuensis_KCTC_2396 1 1
Marinomonas_posidonica_IVIA-Po-181 1 1
Methylomicrobium_alcaliphilum 1 1
Methylomonas_methanica_MC09 1 1
Methylococcus_capsulatus_str._Bath 1 1
Pseudoxanthomonas_suwonensis_11-1 1 1
Halothiobacillus_neapolitanus_c2 1 1
Nitrosococcus_halophilus_Nc4 2 2
Nitrosococcus_oceani_ATCC_19707 2 2
gamma_proteobacterium_HdN1 2 1
Photorhabdus_asymbiotica 1 1
Serratia_proteamaculans_568 1 1
Pectobacterium_wasabiae_WPP163 1 1
Pectobacterium_atrosepticum_SCRI1043 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1
Cronobacter_sakazakii_ES15 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 2 2
Pseudomonas_putida_F1 3 1
Cenarchaeum_symbiosum_A 92 25
Ignisphaera_aggregans_DSM_17230 2 2
Ignicoccus_hospitalis_KIN4/I 4 4
Metallosphaera_sedula_DSM_5348 2 2
Sulfolobus_tokodaii_str._7 1 1
Sulfolobus_islandicus_Y.N.15.51 1 1
Sulfolobus_solfataricus_P2 1 1
Sulfolobus_acidocaldarius_DSM_639 1 1
Pyrobaculum_sp._1860 2 2
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_aerophilum_str._IM2 1 1
Methanosaeta_concilii_GP6 1 1
Methanosalsum_zhilinae_DSM_4017 1 1
Methanococcoides_burtonii_DSM_6242 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanoregula_boonei_6A8 1 1
Methanoculleus_marisnigri_JR1 1 1
Thermococcus_sp._4557 1 1
Thermococcus_onnurineus_NA1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Thermococcus_sibiricus_MM_739 1 1
Thermococcus_barophilus_MP 1 1
Pyrococcus_sp._ST04 1 1
Pyrococcus_yayanosii_CH1 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halopiger_xanaduensis_SH-6 1 1
Haloterrigena_turkmenica_DSM_5511 4 4
Natrinema_sp._J7-2 1 1
Halogeometricum_borinquense_DSM_11551 1 1
Haloferax_mediterranei_ATCC_33500 1 1
Halomicrobium_mukohataei_DSM_12286 2 2
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 1 1
Halalkalicoccus_jeotgali_B3 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11 11
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1 1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3 3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   5 5
Cryptococcus_neoformans_var._grubii_H99_ 3 3
Cryptococcus_neoformans_B-3501A_ 3 3
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 2 2
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 2 2
Saccharomyces_cerevisiae_UC5 1 1
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 1 1
Saccharomyces_cerevisiae_Sigma1278b 1 1
Saccharomyces_cerevisiae_W303 1 1
Saccharomyces_cerevisiae_JAY291 1 1
Saccharomyces_cerevisiae_Y10 1 1
Saccharomyces_cerevisiae_YJM789_ 1 1
Saccharomyces_cerevisiae_YJM789 1 1
Saccharomyces_cerevisiae_RM11-1a 1 1
Saccharomyces_cerevisiae_RM11-1a_ 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   3 3
Hordeum_vulgare_22   (Domesticated barley)   6 6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   6 6
Trypanosoma_brucei_Lister_427_v4.1 1 1
Neospora_caninum_Nc-Liverpool_6.2 1 1
Chroococcidiopsis_thermalis_PCC_7203 1 1
Synechococcus_sp._CC9902 1 1
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 1 1
Prochlorococcus_marinus_str._MIT_9312 1 1
Oscillatoria_nigro-viridis_PCC_7112 3 3
Oscillatoria_acuminata_PCC_6304 1 1
Cyanothece_sp._PCC_7822 9 7
Cyanothece_sp._PCC_7425 1 1
Cyanothece_sp._PCC_7424 1 1
Cyanothece_sp._PCC_8801 1 1
Cyanobacterium_stanieri_PCC_7202 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 4 4
Cylindrospermum_stagnale_PCC_7417 3 2
Anabaena_cylindrica_PCC_7122 3 3
Frankia_sp._EuI1c 3 3
Streptomyces_albus_J1074 2 2
Streptomyces_rapamycinicus_NRRL_5491 3 3
Streptomyces_davawensis_JCM_4913 3 3
Streptomyces_fulvissimus_DSM_40593 3 3
Streptomyces_venezuelae_ATCC_10712 4 4
Streptomyces_collinus_Tu_365 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 5 5
Saccharothrix_espanaensis_DSM_44229 1 1
Amycolatopsis_orientalis_HCCB10007 3 3
Propionibacterium_avidum_44067 1 1
Propionibacterium_acidipropionici_ATCC_4875 1 1
Actinoplanes_friuliensis_DSM_7358 5 5
Rhodococcus_pyridinivorans_SB3094 1 1
Nocardia_brasiliensis_ATCC_700358 2 2
Mycobacterium_sp._KMS 1 1
Mycobacterium_sp._MCS 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Mycobacterium_leprae_TN 1 1
Corynebacterium_glutamicum_MB001 1 1
Corynebacterium_glutamicum_SCgG2 1 1
Corynebacterium_glutamicum_SCgG1 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_diphtheriae_HC03 1 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 1 1
Bifidobacterium_breve_UCC2003 1 1
Actinomyces_graevenitzii_C83_ 1 1
Chthonomonas_calidirosea_T49 3 3
Thermus_oshimai_JL-2 2 2
Ruminococcus_champanellensis_18P13 1 1
Coprococcus_catus_GD/7 1 1
Roseburia_intestinalis_XB6B4 1 1
Clostridium_perfringens_SM101 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_E3_str._Alaska_E43 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Lactobacillus_plantarum_16 1 1
Lactobacillus_plantarum_ZJ316 1 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 1 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 1 1
Lactobacillus_brevis_KB290 1 1
Paenibacillus_sp._Y412MC10 1 1
Bacillus_subtilis_PY79 1 1
Bacillus_subtilis_QB928 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1 1
Bacillus_cereus_F837/76 1 1
Salinibacter_ruber_DSM_13855 1 1
Echinicola_vietnamensis_DSM_17526 2 2
Emticicia_oligotrophica_DSM_17448 2 2
Alistipes_shahii_WAL_8301 3 3
Bacteroides_xylanisolvens_XB1A 2 2
Bacteroides_fragilis_638R 3 3
Bacteroides_fragilis_NCTC_9343 3 3
Nonlabens_dokdonensis_DSW-6 3 3
Psychroflexus_torquis_ATCC_700755 1 1
Singulisphaera_acidiphila_DSM_18658 5 5
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Spirochaeta_thermophila_DSM_6578 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Desulfobacula_toluolica_Tol2 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 2 2
Desulfovibrio_desulfuricans_ND132 1 1
Sorangium_cellulosum_So0157-2 5 5
Myxococcus_stipitatus_DSM_14675 7 7
Burkholderia_phenoliruptrix_BR3459a 1 1
Pandoraea_pnomenusa_3kgm 1 1
Burkholderia_sp._YI23 1 1
Burkholderia_sp._CCGE1003 2 2
Burkholderia_sp._CCGE1001 2 2
Burkholderia_sp._KJ006 1 1
Burkholderia_pseudomallei_NCTC_13179 1 1
Burkholderia_pseudomallei_BPC006 1 1
Burkholderia_pseudomallei_1026b 1 1
Burkholderia_pseudomallei_668 1 1
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_lata 2 2
Burkholderia_ambifaria_MC40-6 2 2
Burkholderia_cenocepacia_MC0-3 1 1
Burkholderia_cenocepacia_AU_1054 1 1
Burkholderia_cenocepacia_J2315 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_cepacia_GG4 2 2
Variovorax_paradoxus_EPS 1 1
Bordetella_parapertussis_Bpp5 1 1
Bordetella_bronchiseptica_MO149 1 1
Bordetella_bronchiseptica_253 1 1
Nitrosomonas_sp._AL212 3 3
Sulfuricella_denitrificans_skB26 1 1
Caulobacter_crescentus_CB15 1 1
Leisingera_methylohalidivorans_DSM_14336 1 1
Octadecabacter_antarcticus_307 1 1
Octadecabacter_arcticus_238 3 3
Micavibrio_aeruginosavorus_EPB 2 1
Candidatus_Pelagibacter_ubique_HTCC1062 5 4
Sinorhizobium_fredii_USDA_257 1 1
Sinorhizobium_fredii_HH103 1 1
Sinorhizobium_meliloti_2011 1 1
Sinorhizobium_meliloti_GR4 1 1
Sinorhizobium_meliloti_BL225C 1 1
Sinorhizobium_meliloti_1021 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Bradyrhizobium_japonicum_USDA_6 1 1
Actinobacillus_suis_H91-0380 1 1
Vibrio_sp._EJY3 1 1
Vibrio_parahaemolyticus_BB22OP 1 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1
Vibrio_anguillarum_Listonella_anguillarum_M3 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U8' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U7' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U4' 3 3
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 3 3
Alteromonas_macleodii_str._'English_Channel_615' 3 3
Alteromonas_macleodii_AltDE1 3 3
Alteromonas_macleodii_str._'English_Channel_673' 1 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 2 2
Alteromonas_macleodii_str._'Black_Sea_11' 2 2
Alteromonas_macleodii_ATCC_27126 1 1
Thalassolituus_oleivorans_MIL-1 1 1
Stenotrophomonas_maltophilia_JV3 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Serratia_plymuthica_4Rx13 1 1
Serratia_liquefaciens_ATCC_27592 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Escherichia_coli_APEC_O78 1 1
Escherichia_coli_O83:H1_str._NRG_857C 1 1
Escherichia_coli_LF82 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1 1
Pseudomonas_putida_H8234 3 1
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_DOT-T1E 2 1
Pseudomonas_putida_BIRD-1 2 1
Pseudomonas_putida_W619 2 1
Pseudomonas_putida_ND6 4 1
Pseudomonas_putida_KT2440 4 1
Pseudomonas_putida_GB-1 2 1
Acinetobacter_calcoaceticus_ruh2202 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Sulfolobus_islandicus_LAL14/1 1 1
Sulfolobus_islandicus_REY15A 1 1
Sulfolobus_islandicus_HVE10/4 1 1
Sulfolobus_islandicus_Y.G.57.14 1 1
Sulfolobus_islandicus_L.S.2.15 1 1
Sulfolobus_islandicus_M.16.27 1 1
Sulfolobus_islandicus_M.14.25 1 1
Sulfolobus_islandicus_M.16.4 1 1
Sulfolobus_islandicus_L.D.8.5 1 1
Sulfolobus_solfataricus_98/2 1 1
Sulfolobus_acidocaldarius_SUSAZ 1 1
Sulfolobus_acidocaldarius_Ron12/I 1 1
Sulfolobus_acidocaldarius_N8 1 1
Methanomethylovorans_hollandica_DSM_15978 2 2
Ferroplasma_acidarmanus_fer1 1 1
Halovivax_ruber_XH-70 1 1
Natrinema_pellirubrum_DSM_15624 1 1
Natronococcus_occultus_SP4 1 1
Haloarcula_hispanica_N601 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   4 4
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4 4
Gorilla_gorilla_69_3.1   (Western gorilla)   5 5
Pongo_abelii_69_2   (Sumatran orangutan)   4 4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4 4
Macaca_mulatta_69_1   (Rhesus monkey)   6 6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5 5
Otolemur_garnettii_69_3   (Small-eared galago)   3 3
Microcebus_murinus_69_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_69_3.4   (Norway rat)   4 4
Mus_musculus_69_38   (House mouse)   6 6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 3
Cavia_porcellus_69_3   (Domestic guinea pig)   3 3
Oryctolagus_cuniculus_69_2   (Rabbit)   4 4
Ochotona_princeps_69   (American pika)   4 4
Tupaia_belangeri_69   (Northern tree shrew)   2 2
Sus_scrofa_69_10.2   (Pig)   2 2
Bos_taurus_69_3.1   (Cattle)   3 3
Vicugna_pacos_69_1   (Alpaca)   3 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_69_1   (Giant panda)   4 4
Canis_familiaris_69_3.1   (Dog)   3 3
Felis_catus_69   (Domestic cat)   2 2
Equus_caballus_69_2   (Horse)   3 3
Myotis_lucifugus_69_2.0   (Little brown bat)   5 5
Pteropus_vampyrus_69_1   (Large flying fox)   2 2
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   3 3
Procavia_capensis_69_1   (Cape rock hyrax)   3 3
Loxodonta_africana_69_3   (African savanna elephant)   5 5
Echinops_telfairi_69   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   3 3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5 5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5 5
Ornithorhynchus_anatinus_69_5   (Platypus)   3 3
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   5 5
Gallus_gallus_69_2   (Chicken)   5 5
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4 4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3 3
Anolis_carolinensis_69_2.0   (Green anole)   7 7
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5 5
Latimeria_chalumnae_69_1   (Coelacanth)   3 3
Gadus_morhua_69_1   (Atlantic cod)   3 3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2 2
Takifugu_rubripes_69_4   (Torafugu)   4 4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3 3
Oryzias_latipes_69_1   (Japanese medaka)   3 3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3 3
Oreochromis_niloticus_69_1.0   (Nile tilapia)   3 3
Danio_rerio_69_9   (Zebrafish)   3 3
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_69   (Vase tunicate)   3 3
Drosophila_melanogaster_69_5   (Fruit fly)   1 1
Caenorhabditis_elegans_69_215   (Roundworm)   5 5
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1 1
Arabidopsis_thaliana_10   (Thale cress)   5 5

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   12 12
Homo_sapiens__(NCBI_version)   (Human)   6 6
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   6 6
Heliconius_numata__(Incomplete) 1 1
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 3 3
Malus_x_domestica_(Duplicate)   (Apple)   5 5
Ricinus_communis__(Early_assembly)   (Castor bean)   2 2
Nicotiana_benthamiana_0.4.4_(Early_draft) 4 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2 2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3 3
Phoenix_dactylifera__(Early_draft)   (Date palm)   2 2
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 39 38
Protein_Data_Bank_(all_PDB_sequenc) 22 22
STRING_v9.0.5_(STRING) 600 590
Uniprot_2018_03_genome 15242 14941
Protozoadb_2010_08_(Protozoadb) 28 28
NCBI_2017_08_genome 20041 19836
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 37 37
PDB_chains_(SCOP_1.75)_(PDB) 1 1
TargetDB__(Targets) 48 46
UniProt__viral_sequences_(Viral) 1 1
NCBI_viral_sequences_(Viral) 5 5

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