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Domain combinations for Plakin repeat superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Plakin repeat domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   136 26
Pan_troglodytes_76_2.1.4   (Chimpanzee)   27 6
Gorilla_gorilla_76_3.1   (Western gorilla)   29 11
Pongo_abelii_76_2   (Sumatran orangutan)   10 4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   5 2
Papio_anubis_76   (Olive baboon)   34 8
Macaca_mulatta_76_1   (Rhesus monkey)   49 12
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   45 14
Otolemur_garnettii_76_3   (Small-eared galago)   19 4
Microcebus_murinus_76_1   (Gray mouse lemur)   22 6
Rattus_norvegicus_76_5.0   (Norway rat)   36 10
Mus_musculus_76_38   (House mouse)   142 28
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   21 6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   22 6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   24 7
Cavia_porcellus_76_3   (Domestic guinea pig)   21 6
Oryctolagus_cuniculus_76_2   (Rabbit)   11 5
Ochotona_princeps_76   (American pika)   16 6
Tupaia_belangeri_76   (Northern tree shrew)   12 4
Sus_scrofa_76_10.2   (Pig)   15 5
Bos_taurus_76_3.1   (Cattle)   22 6
Ovis_aries_76_3.1   (Sheep)   31 8
Vicugna_pacos_76_1   (Alpaca)   5 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   21 6
Mustela_putorius_furo_76_1.0   (Domestic ferret)   20 5
Ailuropoda_melanoleuca_76_1   (Giant panda)   26 9
Canis_familiaris_76_3.1   (Dog)   33 10
Felis_catus_76_6.2   (Domestic cat)   16 5
Equus_caballus_76_2   (Horse)   60 13
Myotis_lucifugus_76_2.0   (Little brown bat)   22 6
Pteropus_vampyrus_76_1   (Large flying fox)   21 6
Sorex_araneus_76_1   (European shrew)   15 5
Erinaceus_europaeus_76   (Western European hedgehog)   19 6
Procavia_capensis_76_1   (Cape rock hyrax)   18 5
Loxodonta_africana_76_3   (African savanna elephant)   48 11
Echinops_telfairi_76   (Small Madagascar hedgehog)   16 5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   29 7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9 3
Macropus_eugenii_76_1.0   (Tammar wallaby)   17 6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   19 7
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   29 8
Ornithorhynchus_anatinus_76_5   (Platypus)   14 6
Saccoglossus_kowalevskii_v3.0 212 20
Petromyzon_marinus_76_7.0   (Sea lamprey)   14 6
Meleagris_gallopavo_76_2   (Turkey)   23 7
Gallus_gallus_76_4   (Chicken)   10 5
Anas_platyrhynchos_76_1.0   (Mallard)   21 6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   20 6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   23 7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9 4
Anolis_carolinensis_76_2.0   (Green anole)   33 7
Xenopus_laevis_   (African clawed frog)   7 5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   20 7
Latimeria_chalumnae_76_1   (Coelacanth)   20 6
Lepisosteus_oculatus_76   (Spotted gar)   32 9
Gadus_morhua_76_1   (Atlantic cod)   36 9
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   31 9
Takifugu_rubripes_76_4   (Torafugu)   104 25
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   39 10
Oryzias_latipes_76_1   (Japanese medaka)   37 11
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   29 8
Poecilia_formosa_76   (Amazon molly)   40 10
Oreochromis_niloticus_76_1.0   (Nile tilapia)   43 11
Astyanax_mexicanus_76   (Mexican tetra)   40 10
Danio_rerio_76_9   (Zebrafish)   69 15
Oikopleura_dioica 13 7
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   19 12
Ciona_intestinalis_76   (Vase tunicate)   11 5
Adineta_vaga 21 7
Octopus_bimaculoides_280 125 7
Crassostrea_gigas_22   (Pacific oyster)   33 3
Lottia_gigantea_   (Owl limpet)   31 4
Helobdella_robusta_ 14 8
Capitella_sp._I_ 57 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   25 1
Heliconius_melpomene_   (Postman butterfly)   25 1
Bombyx_mori_   (Domestic silkworm)   16 2
Nasonia_vitripennis_   (Jewel wasp)   1 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   22 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   22 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   21 1
Atta_cephalotes_v1.1 21 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   21 1
Lucilia_cuprina   (Australian sheep blowfly)   18 1
Drosophila_grimshawi_1.3 16 2
Drosophila_willistoni_1.3 16 1
Drosophila_pseudoobscura_2.13 16 1
Drosophila_persimilis_1.3 1 1
Drosophila_suzukii 15 1
Drosophila_yakuba_1.3 15 1
Drosophila_simulans_1.3 5 1
Drosophila_sechellia_1.3 16 1
Drosophila_melanogaster_76_5   (Fruit fly)   32 19
Drosophila_erecta_1.3 15 1
Drosophila_ananassae_1.3 14 1
Drosophila_virilis_1.2 9 1
Drosophila_mojavensis_1.3 15 1
Megaselia_scalaris_22 2 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   17 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   15 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   16 1
Tribolium_castaneum_3.0   (Red flour beetle)   20 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   17 2
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Tetranychus_urticae_   (Two-spotted spider mite)   3 2
Pristionchus_pacificus_ 8 1
Meloidogyne_incognita_   (Southern root-knot nematode)   21 2
Meloidogyne_hapla_ 16 4
Onchocerca_volvulus_22 10 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   9 1
Caenorhabditis_japonica_ 10 1
Caenorhabditis_remanei_ 11 1
Caenorhabditis_elegans_76_235   (Roundworm)   49 5
Caenorhabditis_briggsae_2 10 1
Trichinella_spiralis_22 10 1
Hymenolepis_microstoma_ 5 3
Echinococcus_multilocularis_ 4 2
Echinococcus_granulosus_ 4 2
Taenia_solium_   (Pork tapeworm)   3 2
Schistosoma_mansoni_ 10 8

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   23 8
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   25 12
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   16 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   49 5
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   50 9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   22 5
Gorilla_gorilla_69_3.1   (Western gorilla)   16 5
Pongo_abelii_69_2   (Sumatran orangutan)   10 4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   10 3
Macaca_mulatta_69_1   (Rhesus monkey)   16 5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   22 7
Otolemur_garnettii_69_3   (Small-eared galago)   19 4
Microcebus_murinus_69_1   (Gray mouse lemur)   22 6
Rattus_norvegicus_69_3.4   (Norway rat)   25 7
Mus_musculus_69_38   (House mouse)   22 6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   21 6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   22 6
Cavia_porcellus_69_3   (Domestic guinea pig)   21 6
Oryctolagus_cuniculus_69_2   (Rabbit)   17 7
Ochotona_princeps_69   (American pika)   16 6
Tupaia_belangeri_69   (Northern tree shrew)   12 4
Sus_scrofa_69_10.2   (Pig)   15 5
Bos_taurus_69_3.1   (Cattle)   22 6
Vicugna_pacos_69_1   (Alpaca)   5 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   21 6
Mustela_putorius_furo_69_1.0   (Domestic ferret)   20 5
Ailuropoda_melanoleuca_69_1   (Giant panda)   23 7
Canis_familiaris_69_3.1   (Dog)   21 6
Felis_catus_69   (Domestic cat)   12 5
Equus_caballus_69_2   (Horse)   20 6
Myotis_lucifugus_69_2.0   (Little brown bat)   22 6
Pteropus_vampyrus_69_1   (Large flying fox)   21 6
Sorex_araneus_69_1   (European shrew)   15 5
Erinaceus_europaeus_69   (Western European hedgehog)   19 6
Procavia_capensis_69_1   (Cape rock hyrax)   18 5
Loxodonta_africana_69_3   (African savanna elephant)   33 7
Echinops_telfairi_69   (Small Madagascar hedgehog)   16 5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   13 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9 3
Macropus_eugenii_69_1.0   (Tammar wallaby)   17 6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   18 6
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   29 8
Ornithorhynchus_anatinus_69_5   (Platypus)   14 6
Petromyzon_marinus_69_7.0   (Sea lamprey)   13 5
Meleagris_gallopavo_69_2   (Turkey)   21 6
Gallus_gallus_69_2   (Chicken)   9 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   20 6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9 4
Anolis_carolinensis_69_2.0   (Green anole)   32 7
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   20 7
Latimeria_chalumnae_69_1   (Coelacanth)   20 6
Gadus_morhua_69_1   (Atlantic cod)   36 9
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   26 8
Takifugu_rubripes_69_4   (Torafugu)   33 9
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   38 9
Oryzias_latipes_69_1   (Japanese medaka)   37 11
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   29 8
Oreochromis_niloticus_69_1.0   (Nile tilapia)   34 9
Danio_rerio_69_9   (Zebrafish)   47 10
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   16 11
Ciona_intestinalis_69   (Vase tunicate)   11 5
Drosophila_melanogaster_69_5   (Fruit fly)   14 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   202 39
Homo_sapiens__(NCBI_version)   (Human)   89 15
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   22 6
Heliconius_numata__(Incomplete) 3 3
Loa_loa_v3.3_(Request)   (Eye worm)   9 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   11 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   11 2
TargetDB__(Targets) 53 31
Protein_Data_Bank_(all_PDB_sequenc) 13 12
PDB_chains_(SCOP_1.75)_(PDB) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 26 26
STRING_v9.0.5_(STRING) 775 197
Uniprot_2018_03_genome 17727 3096
NCBI_2017_08_genome 49554 7301

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