SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Cullin homology domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Cullin homology domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   31 31
Pan_troglodytes_76_2.1.4   (Chimpanzee)   9 9
Gorilla_gorilla_76_3.1   (Western gorilla)   13 13
Pongo_abelii_76_2   (Sumatran orangutan)   10 10
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   12 11
Papio_anubis_76   (Olive baboon)   8 8
Macaca_mulatta_76_1   (Rhesus monkey)   15 15
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   25 25
Otolemur_garnettii_76_3   (Small-eared galago)   9 9
Microcebus_murinus_76_1   (Gray mouse lemur)   11 9
Rattus_norvegicus_76_5.0   (Norway rat)   9 9
Mus_musculus_76_38   (House mouse)   19 19
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10 9
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   12 12
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   13 13
Cavia_porcellus_76_3   (Domestic guinea pig)   9 9
Oryctolagus_cuniculus_76_2   (Rabbit)   8 8
Ochotona_princeps_76   (American pika)   13 9
Tupaia_belangeri_76   (Northern tree shrew)   8 8
Sus_scrofa_76_10.2   (Pig)   11 11
Bos_taurus_76_3.1   (Cattle)   11 11
Ovis_aries_76_3.1   (Sheep)   12 12
Vicugna_pacos_76_1   (Alpaca)   7 6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9 9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   10 10
Ailuropoda_melanoleuca_76_1   (Giant panda)   10 10
Canis_familiaris_76_3.1   (Dog)   11 11
Felis_catus_76_6.2   (Domestic cat)   13 13
Equus_caballus_76_2   (Horse)   12 12
Myotis_lucifugus_76_2.0   (Little brown bat)   15 15
Pteropus_vampyrus_76_1   (Large flying fox)   10 9
Sorex_araneus_76_1   (European shrew)   8 7
Erinaceus_europaeus_76   (Western European hedgehog)   8 7
Procavia_capensis_76_1   (Cape rock hyrax)   9 9
Loxodonta_africana_76_3   (African savanna elephant)   11 11
Echinops_telfairi_76   (Small Madagascar hedgehog)   13 11
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   11 11
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   8 8
Macropus_eugenii_76_1.0   (Tammar wallaby)   9 8
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   9 9
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   10 10
Ornithorhynchus_anatinus_76_5   (Platypus)   10 9
Saccoglossus_kowalevskii_v3.0 9 9
Petromyzon_marinus_76_7.0   (Sea lamprey)   7 7
Meleagris_gallopavo_76_2   (Turkey)   8 8
Gallus_gallus_76_4   (Chicken)   9 9
Anas_platyrhynchos_76_1.0   (Mallard)   8 8
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   9 9
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9 9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   11 11
Anolis_carolinensis_76_2.0   (Green anole)   9 9
Xenopus_laevis_   (African clawed frog)   17 17
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   11 11
Latimeria_chalumnae_76_1   (Coelacanth)   10 10
Lepisosteus_oculatus_76   (Spotted gar)   11 11
Gadus_morhua_76_1   (Atlantic cod)   13 11
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   12 12
Takifugu_rubripes_76_4   (Torafugu)   29 28
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   12 12
Oryzias_latipes_76_1   (Japanese medaka)   10 10
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10 10
Poecilia_formosa_76   (Amazon molly)   10 10
Oreochromis_niloticus_76_1.0   (Nile tilapia)   9 9
Astyanax_mexicanus_76   (Mexican tetra)   10 10
Danio_rerio_76_9   (Zebrafish)   16 16
Oikopleura_dioica 7 7
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   25 24
Ciona_intestinalis_76   (Vase tunicate)   8 8
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   12 10
Adineta_vaga 31 31
Octopus_bimaculoides_280 8 8
Crassostrea_gigas_22   (Pacific oyster)   7 7
Lottia_gigantea_   (Owl limpet)   6 6
Helobdella_robusta_ 7 7
Capitella_sp._I_ 7 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   7 6
Heliconius_melpomene_   (Postman butterfly)   5 5
Bombyx_mori_   (Domestic silkworm)   8 8
Nasonia_vitripennis_   (Jewel wasp)   6 6
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   10 10
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   6 6
Linepithema_humile_v1.1   (Argentine ant)   6 6
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   6 6
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6 6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   6 6
Atta_cephalotes_v1.1 7 7
Camponotus_floridanus_v3.3   (Florida carpenter ant)   6 6
Lucilia_cuprina   (Australian sheep blowfly)   5 5
Drosophila_grimshawi_1.3 6 6
Drosophila_willistoni_1.3 5 5
Drosophila_pseudoobscura_2.13 7 7
Drosophila_persimilis_1.3 7 7
Drosophila_suzukii 9 7
Drosophila_yakuba_1.3 7 7
Drosophila_simulans_1.3 5 5
Drosophila_sechellia_1.3 8 8
Drosophila_melanogaster_76_5   (Fruit fly)   15 15
Drosophila_erecta_1.3 7 7
Drosophila_ananassae_1.3 6 6
Drosophila_virilis_1.2 6 6
Drosophila_mojavensis_1.3 6 6
Megaselia_scalaris_22 3 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   9 9
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4 4
Anopheles_darlingi_22   (American malaria mosquito)   5 5
Anopheles_gambiae_49_3j   (African malaria mosquito)   6 6
Tribolium_castaneum_3.0   (Red flour beetle)   7 7
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   8 7
Acyrthosiphon_pisum_   (Pea aphid)   9 9
Rhodnius_prolixus_22 6 6
Daphnia_pulex_   (Common water flea)   12 12
Strigamia_maritima_22 13 12
Sarcoptes_scabiei 6 6
Tetranychus_urticae_   (Two-spotted spider mite)   7 7
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   5 5
Pristionchus_pacificus_ 6 6
Meloidogyne_incognita_   (Southern root-knot nematode)   9 9
Meloidogyne_hapla_ 3 3
Onchocerca_volvulus_22 8 8
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7 7
Caenorhabditis_japonica_ 6 6
Caenorhabditis_brenneri_ 8 8
Caenorhabditis_remanei_ 9 9
Caenorhabditis_elegans_76_235   (Roundworm)   11 11
Caenorhabditis_briggsae_2 10 10
Trichinella_spiralis_22 8 8
Hymenolepis_microstoma_ 11 11
Echinococcus_multilocularis_ 6 6
Echinococcus_granulosus_ 6 6
Taenia_solium_   (Pork tapeworm)   6 6
Schistosoma_mansoni_ 14 14
Mnemiopsis_leidyi   (Sea walnut)   5 5
Thelohanellus_kitauei 7 7
Acropora_digitifera_v1.0 6 6
Nematostella_vectensis_1.0   (Starlet sea anemone)   7 7
Hydra_vulgaris 6 6
Amphimedon_queenslandica 11 11
Trichoplax_adhaerens_ 6 6
Proterospongia_sp._ATCC_50818_ 6 5
Monosiga_brevicollis_ 5 5
Sphaeroforma_arctica_JP610_ 9 9
Capsaspora_owczarzaki_ATCC_30864_ 5 5
Conidiobolus_coronatus_NRRL28638_v1.0 5 5
Mortierella_verticillata_NRRL_6337_ 5 5
Phycomyces_blakesleeanus_ 6 6
Rhizopus_oryzae_RA_99-880_ 7 7
Mucor_circinelloides_ 6 6
Rhizomucor_miehei_CAU432_ 5 5
Malassezia_globosa_CBS_7966_ 8 8
Sporisorium_reilianum_22 4 4
Ustilago_maydis_ 4 4
Mixia_osmundae_IAM_14324_v1.0 4 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 4 4
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 5 5
Melampsora_laricis-populina_ 5 5
Rhodotorula_graminis_WP1_v1.0 4 4
Sporobolomyces_roseus_IAM_13481_ 4 4
Microbotryum_violaceum_22 4 4
Wallemia_sebi_v1.0 4 4
Sphaerobolus_stellatus_v1.0 4 4
Piloderma_croceum_F_1598_v1.0 4 4
Serpula_lacrymans_var._lacrymans_S7.9_ 5 5
Coniophora_puteana 4 4
Hydnomerulius_pinastri_v2.0 4 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 5 5
Pisolithus_microcarpus_441_v1.0 10 10
Pisolithus_tinctorius_Marx_270_v1.0 4 4
Scleroderma_citrinum_Foug_A_v1.0 6 6
Coprinopsis_cinerea_okayama7_130_v3 5 5
Pleurotus_ostreatus_   (Oyster mushroom)   4 4
Amanita_thiersii_Skay4041_v1.0 5 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6 6
Galerina_marginata_v1.0 5 5
Hebeloma_cylindrosporum_h7_v2.0 8 8
Laccaria_bicolor_S238N-H82_ 9 9
Agaricus_bisporus_var._bisporus_ 5 5
Schizophyllum_commune_ 5 5
Stereum_hirsutum_FP-91666_SS1__v1.0 4 4
Heterobasidion_annosum_ 4 4
Gloeophyllum_trabeumv1.0 4 4
Punctularia_strigosozonata_v1.0 4 4
Sebacina_vermifera_MAFF_305830_v1.0 7 7
Fomitiporia_mediterranea_v1.0 6 6
Tulasnella_calospora_AL13/4D_v1.0 5 5
Postia_placenta_ 7 7
Wolfiporia_cocos_MD-104_SS10__v1.0 4 4
Fomitopsis_pinicolav1.0 5 5
Fomitopsis_pinicola_FP-58527_SS1_v3.0 5 5
Phanerochaete_chrysosporium_RP-78_2.1 5 5
Dichomitus_squalens 4 4
Trametes_versicolor_v1.0 4 4
Tremella_mesenterica_   (Witches' butter)   4 4
Daldinia_eschscholzii_EC12_v1.0 4 4
Apiospora_montagnei_NRRL_25634_v1.0 4 4
Magnaporthe_poae_ATCC_64411_22 4 4
Magnaporthe_grisea_70-15_ 4 4
Podospora_anserina_ 4 4
Sporotrichum_thermophile_ATCC_42464_ 4 4
Thielavia_terrestris_NRRL_8126_ 4 4
Chaetomium_globosum_CBS_148.51_ 4 4
Neurospora_tetrasperma_ 4 4
Neurospora_discreta_FGSC_8579_ 3 3
Neurospora_crassa_OR74A_ 4 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   4 4
Verticillium_albo-atrum_VaMs.102_ 3 3
Verticillium_dahliae_VdLs.17_ 4 4
Acremonium_alcalophilumv_1.0 4 4
Glomerella_graminicola_22 4 4
Fusarium_graminearum_ 4 4
Nectria_haematococca_mpVI_ 4 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4 4
Fusarium_verticillioides_7600_ 4 4
Trichoderma_asperellum_CBS_433.97_v1.0 4 4
Trichoderma_atroviride_ 4 4
Trichoderma_citrinoviride_v1.0 4 4
Trichoderma_reesei_1.2 4 4
Trichoderma_virens_Gv29-8_ 4 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4 4
Trichoderma_harzianum_CBS_226.95_v1.0 4 4
Amorphotheca_resinae_v1.0   (Creosote fungus)   4 4
Botrytis_cinerea_B05.10_ 4 4
Sclerotinia_sclerotiorum_ 4 4
Blumeria_graminis_22 4 4
Didymella_exigua_CBS_183.55_v1.0 4 4
Leptosphaeria_maculans_22 4 4
Setosphaeria_turcica_v1.0 4 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4 4
Cochliobolus_victoriae_FI3_v1.0 4 4
Cochliobolus_carbonum_26-R-13_v1.0 4 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   4 4
Alternaria_brassicicola_ 3 3
Cochliobolus_lunatus_m118_v2.0 4 4
Pyrenophora_teres_f._teres_22 4 4
Pyrenophora_tritici-repentis_ 4 4
Stagonospora_nodorum_ 4 4
Mycosphaerella_graminicola_IPO323_ 4 4
Zasmidium_cellare_ATCC_36951_v1.0 4 4
Dothistroma_septosporum 4 4
Septoria_musiva_v1.0 4 4
Mycosphaerella_fijiensis_CIRAD86_ 4 4
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4 4
Paracoccidioides_brasiliensis_Pb18_ 4 4
Coccidioides_posadasii_RMSCC_3488_ 4 4
Coccidioides_immitis_RS_ 4 4
Ajellomyces_dermatitidis_SLH14081_ 4 4
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3 3
Microsporum_canis_CBS_113480_ 4 4
Trichophyton_equinum_CBS_127.97_ 4 4
Trichophyton_verrucosum_HKI_0517_ 4 4
Arthroderma_benhamiae_CBS_112371_ 4 4
Trichophyton_tonsurans_CBS_112818_ 4 4
Trichophyton_rubrum_CBS_118892_ 4 4
Uncinocarpus_reesii_1704_ 4 4
Aspergillus_zonatus_v1.0 4 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 4 4
Penicillium_chrysogenum_v1.0 4 4
Aspergillus_acidus_v1.0 4 4
Aspergillus_fumigatus_Af293 4 4
Aspergillus_brasiliensis_v1.0 4 4
Aspergillus_nidulans_FGSC_A4_ 4 4
Aspergillus_sydowii_v1.0 4 4
Aspergillus_versicolor_v1.0 4 4
Aspergillus_glaucus 4 4
Aspergillus_carbonarius_ITEM_5010_ 4 4
Neosartorya_fischeri_NRRL_181_ 4 4
Aspergillus_terreus_NIH2624_ 4 4
Aspergillus_tubingensis_v1.0 4 4
Aspergillus_wentii_v1.0 4 4
Aspergillus_oryzae_RIB40_ 4 4
Aspergillus_niger_22 4 4
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 4 4
Aspergillus_clavatus_NRRL_1_ 4 4
Penicillium_marneffei_ATCC_18224_ 4 4
Tuber_melanosporum_Mel28_22 4 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4 4
Hansenula_polymorpha_v2.0 4 4
Dekkera_bruxellensis_CBS_2499_v2.0 4 4
Pichia_membranifaciensv1.0 5 5
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4 4
Candida_dubliniensis_CD36_ 4 4
Candida_tropicalis_MYA-3404_ 4 4
Candida_parapsilosis_ 4 4
Candida_albicans_SC5314 4 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 4 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4 4
Pichia_stipitis_CBS_6054_ 4 4
Candida_guilliermondii_ATCC_6260_ 4 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 4 4
Debaromyces_hansenii 4 4
Wickerhamomyces_anomalus 3 3
Pichia_pastoris_GS115_ 4 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 2
Yarrowia_lipolytica_CLIB122 4 4
Candida_lusitaniae_ATCC_42720_ 4 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4 4
Vanderwaltozyma_polyspora_DSM_70294_ 4 4
Candida_glabrata_CBS138 5 5
Kluyveromyces_thermotolerans_CBS_6340 5 5
Lachancea_kluyveri_ 6 6
Kluyveromyces_waltii 4 4
Ashbya_gossypii_ATCC_10895_ 5 5
Zygosaccharomyces_rouxii_ 5 5
Saccharomyces_mikatae_MIT 5 4
Saccharomyces_paradoxus_MIT 5 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   5 5
Saccharomyces_bayanus_MIT 6 5
Kluyveromyces_lactis 5 5
Schizosaccharomyces_cryophilus_OY26_22 4 4
Schizosaccharomyces_octosporus_yFS286_ 4 4
Schizosaccharomyces_japonicus_yFS275_ 4 4
Schizosaccharomyces_pombe   (Fission yeast)   4 4
Catenaria_anguillulae_PL171_v1.0 6 6
Allomyces_macrogynus_ATCC_38327_ 10 10
Spizellomyces_punctatus_DAOM_BR117_ 5 5
Dictyostelium_discoideum 6 6
Dictyostelium_purpureum_ 6 6
Entamoeba_dispar_1.2 13 13
Entamoeba_invadens_1.2 12 12
Entamoeba_histolytica_1 10 10
Selaginella_moellendorffii_ 10 10
Pinus_taeda   (Loblolly pine)   64 62
Picea_abies   (Norway spruce)   4 4
Eucalyptus_grandis_v201   (Rose gum)   35 33
Theobroma_cacao_B97-61/B2_v1   (Cacao)   7 7
Gossypium_raimondii_v221 35 35
Citrus_clementina_v165 15 15
Citrus_sinensis_v154   (Sweet orange)   27 27
Thellungiella_halophila_v173 11 11
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   16 16
Capsella_rubella_v183 6 6
Arabidopsis_lyrata_   (Lyrate rockcress)   6 6
Arabidopsis_thaliana_10   (Thale cress)   10 10
Carica_papaya_   (Papaya)   5 5
Medicago_truncatula_   (Barrel medic)   30 30
Phaseolus_vulgaris_v186   (French bean)   6 6
Glycine_max_v109   (Soybean)   27 26
Cucumis_sativus_v122   (Cucumber)   9 9
Fragaria_vesca_   (Wild strawberry)   16 16
Malus_domestica_v196   (Apple)   20 20
Prunus_persica_v139   (Peach)   8 8
Linum_usitatissimum_v200   (Flax)   12 12
Manihot_esculenta_v147   (Cassava)   13 13
Populus_trichocarpa_v156   (Black cottonwood)   12 12
Vitis_vinifera_   (Wine grape)   7 7
Mimulus_guttatus_v140   (Spotted monkey flower)   10 10
Solanum_lycopersicum_v.2.3   (Tomato)   15 15
Solanum_tuberosum_   (Potato)   12 12
Actinidia_chinensis_Hongyang_ 18 17
Aquilegia_coerulea_v195 24 24
Triticum_urartu_22 6 6
Triticum_aestivum_22   (Bread wheat)   22 22
Aegilops_tauschii_22 7 7
Brachypodium_distachyon_   (Stiff brome)   10 10
Oryza_barthii_22   (African wild rice)   11 11
Oryza_meridionalis_22 12 12
Oryza_glumaepatula_22 13 13
Oryza_glaberrima   (African rice)   10 10
Oryza_punctata_22 13 13
Oryza_nivara_22 10 10
Oryza_brachyantha_22   (Malo sina)   8 8
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   11 11
Oryza_sativa_v193   (Rice)   11 11
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   24 20
Panicum_virgatum_v202   (Switchgrass)   16 16
Setaria_italica_v164   (Foxtail millet)   7 7
Zea_mays_subsp._mays_   (Maize)   13 13
Zea_mays_v181   (Maize)   17 17
Sorghum_bicolor_   (Sorghum)   7 7
Musa_balbisiana   (Balbis banana)   14 14
Musa_acuminata_22   (Wild Malaysian banana)   14 14
Amborella_trichopoda_22 5 5
Physcomitrella_patens 8 8
Coccomyxa_subellipsoidea_sp._C-169_v2 4 4
Asterochloris_sp._Cgr/DA1pho_v1.0 4 4
Chlorella_variabilis_sp._NC64A_ 4 4
Chlorella_vulgaris_ 4 4
Volvox_carteri_f._nagariensis_ 4 4
Volvox_carteri_v199 4 4
Chlamydomonas_reinhardtii_4.0 3 3
Ostreococcus_sp._RCC809_ 4 4
Ostreococcus_lucimarinus_CCE9901_ 4 4
Ostreococcus_tauri_ 4 4
Bathycoccus_prasinos_ 5 4
Micromonas_sp._RCC299_ 4 4
Micromonas_pusilla_CCMP1545_v3.0 4 4
Cyanidioschyzon_merolae_strain_10D_22 4 4
Cyanidioschyzon_merolae 4 4
Porphyridium_purpureum_02_2012 5 5
Thecamonas_trahens_ATCC_50062_ 4 4
Bigelowiella_natans_CCMP2755_22 7 7
Cyanophora_paradoxa_ 4 4
Leishmania_mexicana_2.4 9 9
Leishmania_major_strain_Friedlin_ 9 9
Leishmania_infantum_JPCM5_2.4 9 9
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 9 9
Trypanosoma_vivax_ 8 8
Trypanosoma_cruzi_strain_CL_Brener 7 7
Trypanosoma_congolense_2.4 12 12
Trypanosoma_brucei_gambiense_v4.1 8 8
Trypanosoma_brucei_TREU927_v4.1 8 8
Ectocarpus_siliculosus 6 6
Aureococcus_anophagefferens_ 6 6
Albugo_laibachii_22 6 6
Pythium_iwayamai_DAOM_BR242034_22 5 5
Pythium_arrhenomanes_ATCC_12531_22 5 5
Pythium_ultimum_v1.7-2 5 5
Pythium_aphanidermatum_DAOM_BR444_22 5 5
Pythium_irregulare_DAOM_BR486_22 5 5
Pythium_vexans_DAOM_BR484_22 5 5
Phytophthora_ramorum_1.1   (Sudden oak death agent)   4 4
Phytophthora_sojae_1.1 4 4
Phytophthora_infestans_T30-4_ 5 5
Phytophthora_capsici_ 6 6
Hyaloperonospora_arabidopsidis_22 6 6
Phaeodactylum_tricornutumCCAP_1055/1 4 4
Fragilariopsis_cylindrus 7 7
Thalassiosira_pseudonana_CCMP1335 5 5
Perkinsus_marinus_ATCC_50983_ 10 10
Paramecium_tetraurelia_ 13 13
Tetrahymena_thermophila_SB210_1_ 9 9
Ichthyophthirius_multifiliis_strain_G5_ 8 8
Cryptosporidium_hominis 3 3
Cryptosporidium_muris 5 5
Cryptosporidium_parvum_Iowa_II 5 5
Neospora_caninum 4 4
Toxoplasma_gondii_VEG 4 4
Toxoplasma_gondii_ME49 4 4
Toxoplasma_gondii_GT1 4 4
Babesia_bovis_T2Bo_ 4 4
Theileria_parva__ 2 2
Theileria_annulata 2 2
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 3 3
Plasmodium_knowlesi_strain_H_ 3 3
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 2 2
Plasmodium_berghei_ANKA_ 4 3
Symbiodinium_minutum_clade_B1_v1.2 9 8
Naegleria_gruberi_ 9 9
Trichomonas_vaginalis_ 17 17
Guillardia_theta_CCMP2712_v1.0_ 5 5
Emiliania_huxleyi_CCMP1516_ 12 12
Halanaerobium_praevalens_DSM_2228 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   18 18
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   15 15
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   6 6
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   6 6
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   10 10
Cryptococcus_neoformans_var._grubii_H99_ 4 4
Cryptococcus_neoformans_B-3501A_ 4 4
Cryptococcus_neoformans_JEC21_ 4 4
Paracoccidioides_brasiliensis_Pb01_ 4 4
Paracoccidioides_brasiliensis_Pb03_ 4 4
Coccidioides_posadasii_str._Silveira_ 4 4
Coccidioides_immitis_RMSCC_3703_ 5 5
Coccidioides_immitis_RMSCC_2394_ 4 4
Coccidioides_immitis_H538.4_ 4 4
Ajellomyces_dermatitidis_ER-3_ 4 4
Histoplasma_capsulatum_H143 5 5
Histoplasma_capsulatum_H88 4 4
Histoplasma_capsulatum_G186AR 4 4
Aspergillus_fumigatus_A1163_ 4 4
Candida_albicans_WO-1_ 3 3
Saccharomyces_cerevisiae_UC5 2 2
Saccharomyces_cerevisiae_PW5 4 4
Saccharomyces_cerevisiae_FL100 4 4
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 5 5
Saccharomyces_cerevisiae_YJM269 5 5
Saccharomyces_cerevisiae_T7 5 5
Saccharomyces_cerevisiae_FostersB 3 3
Saccharomyces_cerevisiae_FostersO 3 3
Saccharomyces_cerevisiae_VL3 5 5
Saccharomyces_cerevisiae_Vin13 4 4
Saccharomyces_cerevisiae_LalvinQA23 3 3
Saccharomyces_cerevisiae_AWRI796 4 4
Saccharomyces_cerevisiae_Sigma1278b 5 5
Saccharomyces_cerevisiae_W303 5 5
Saccharomyces_cerevisiae_JAY291 5 5
Saccharomyces_cerevisiae_AWRI1631 4 4
Saccharomyces_cerevisiae_YPS163 3 3
Saccharomyces_cerevisiae_T73 2 2
Saccharomyces_cerevisiae_CLIB215 5 5
Saccharomyces_cerevisiae_Y10 1 1
Saccharomyces_cerevisiae_YJM789_ 5 5
Saccharomyces_cerevisiae_YJM789 5 5
Saccharomyces_cerevisiae_RM11-1a 5 5
Saccharomyces_cerevisiae_RM11-1a_ 5 5
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   5 5
Schizosaccharomyces_pombe_972h-_ 4 4
Batrachochytrium_dendrobatidis_JEL423_ 5 5
Batrachochytrium_dendrobatidis_JAM81_ 5 5
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7 7
Hordeum_vulgare_22   (Domesticated barley)   16 16
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   9 9
Trypanosoma_brucei_Lister_427_v4.1 8 8
Neospora_caninum_Nc-Liverpool_6.2 4 4
Plasmodium_falciparum_HB3_ 2 2
Plasmodium_falciparum_Dd2_ 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   9 9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   9 9
Gorilla_gorilla_69_3.1   (Western gorilla)   10 10
Pongo_abelii_69_2   (Sumatran orangutan)   9 9
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   9 8
Macaca_mulatta_69_1   (Rhesus monkey)   9 9
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   9 9
Otolemur_garnettii_69_3   (Small-eared galago)   9 9
Microcebus_murinus_69_1   (Gray mouse lemur)   11 9
Rattus_norvegicus_69_3.4   (Norway rat)   11 11
Mus_musculus_69_38   (House mouse)   9 9
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10 9
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   9 9
Cavia_porcellus_69_3   (Domestic guinea pig)   9 9
Oryctolagus_cuniculus_69_2   (Rabbit)   8 8
Ochotona_princeps_69   (American pika)   13 9
Tupaia_belangeri_69   (Northern tree shrew)   8 8
Sus_scrofa_69_10.2   (Pig)   10 10
Bos_taurus_69_3.1   (Cattle)   11 11
Vicugna_pacos_69_1   (Alpaca)   7 6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9 9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   9 9
Ailuropoda_melanoleuca_69_1   (Giant panda)   10 10
Canis_familiaris_69_3.1   (Dog)   9 9
Felis_catus_69   (Domestic cat)   10 9
Equus_caballus_69_2   (Horse)   9 9
Myotis_lucifugus_69_2.0   (Little brown bat)   15 15
Pteropus_vampyrus_69_1   (Large flying fox)   10 9
Sorex_araneus_69_1   (European shrew)   8 7
Erinaceus_europaeus_69   (Western European hedgehog)   8 7
Procavia_capensis_69_1   (Cape rock hyrax)   9 9
Loxodonta_africana_69_3   (African savanna elephant)   9 9
Echinops_telfairi_69   (Small Madagascar hedgehog)   13 11
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10 9
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   8 8
Macropus_eugenii_69_1.0   (Tammar wallaby)   9 8
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   8 8
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   9 9
Ornithorhynchus_anatinus_69_5   (Platypus)   10 9
Petromyzon_marinus_69_7.0   (Sea lamprey)   6 6
Meleagris_gallopavo_69_2   (Turkey)   7 7
Gallus_gallus_69_2   (Chicken)   8 8
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   9 9
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   8 8
Anolis_carolinensis_69_2.0   (Green anole)   9 9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   8 8
Latimeria_chalumnae_69_1   (Coelacanth)   8 8
Gadus_morhua_69_1   (Atlantic cod)   13 11
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   11 11
Takifugu_rubripes_69_4   (Torafugu)   11 10
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   10 10
Oryzias_latipes_69_1   (Japanese medaka)   10 10
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10 10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   9 9
Danio_rerio_69_9   (Zebrafish)   10 10
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7 6
Ciona_intestinalis_69   (Vase tunicate)   8 8
Drosophila_melanogaster_69_5   (Fruit fly)   7 7
Caenorhabditis_elegans_69_215   (Roundworm)   7 7
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   5 5
Arabidopsis_thaliana_10   (Thale cress)   7 7

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   31 31
Homo_sapiens__(NCBI_version)   (Human)   15 15
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   9 9
Heliconius_numata__(Incomplete) 5 5
Loa_loa_v3.3_(Request)   (Eye worm)   7 7
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   10 9
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   6 6
Moniliophthora_perniciosa_FA553__(Genome_survey) 3 3
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 3 3
Lotus_japonicus__(Early_assembly) 9 9
Malus_x_domestica_(Duplicate)   (Apple)   20 20
Ricinus_communis__(Early_assembly)   (Castor bean)   5 5
Nicotiana_benthamiana_0.4.4_(Early_draft) 18 17
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   15 15
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   15 15
Phoenix_dactylifera__(Early_draft)   (Date palm)   11 11
NCBI_viral_sequences_(Viral) 6 6
Protein_Data_Bank_(all_PDB_sequenc) 30 30
TargetDB__(Targets) 39 39
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 116 116
UniProt__viral_sequences_(Viral) 3 3
Protozoadb_2010_08_(Protozoadb) 200 199
STRING_v9.0.5_(STRING) 754 749
PDB_chains_(SCOP_1.75)_(PDB) 4 4
NCBI_2017_08_genome 7973 7955
Uniprot_2018_03_genome 10048 9967

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