SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Bacterial photosystem II reaction centre, L and M subunits superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Bacterial photosystem II reaction centre, L and M subunits domain in that genome.

Complete genomes
Genome     Number   Proteins
Selaginella_moellendorffii_ 4 4
Pinus_taeda   (Loblolly pine)   2 2
Eucalyptus_grandis_v201   (Rose gum)   3 3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 14 14
Citrus_clementina_v165 3 3
Thellungiella_halophila_v173 4 4
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   5 5
Arabidopsis_thaliana_10   (Thale cress)   2 2
Carica_papaya_   (Papaya)   3 3
Medicago_truncatula_   (Barrel medic)   16 16
Phaseolus_vulgaris_v186   (French bean)   3 3
Glycine_max_v109   (Soybean)   3 3
Cucumis_sativus_v122   (Cucumber)   3 3
Fragaria_vesca_   (Wild strawberry)   5 5
Malus_domestica_v196   (Apple)   2 2
Linum_usitatissimum_v200   (Flax)   1 1
Manihot_esculenta_v147   (Cassava)   4 4
Populus_trichocarpa_v156   (Black cottonwood)   12 12
Vitis_vinifera_   (Wine grape)   4 4
Mimulus_guttatus_v140   (Spotted monkey flower)   12 12
Solanum_lycopersicum_v.2.3   (Tomato)   18 18
Solanum_tuberosum_   (Potato)   11 11
Actinidia_chinensis_Hongyang_ 7 7
Aquilegia_coerulea_v195 3 3
Triticum_urartu_22 10 10
Triticum_aestivum_22   (Bread wheat)   36 36
Aegilops_tauschii_22 2 2
Brachypodium_distachyon_   (Stiff brome)   6 6
Oryza_barthii_22   (African wild rice)   1 1
Oryza_meridionalis_22 2 2
Oryza_glaberrima   (African rice)   8 8
Oryza_punctata_22 2 2
Oryza_nivara_22 2 2
Oryza_brachyantha_22   (Malo sina)   2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   8 8
Oryza_sativa_v193   (Rice)   8 8
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4 4
Panicum_virgatum_v202   (Switchgrass)   1 1
Setaria_italica_v164   (Foxtail millet)   4 4
Zea_mays_subsp._mays_   (Maize)   1 1
Zea_mays_v181   (Maize)   3 3
Sorghum_bicolor_   (Sorghum)   3 3
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   3 3
Amborella_trichopoda_22 9 9
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Bathycoccus_prasinos_ 2 2
Cyanidioschyzon_merolae_strain_10D_22 2 2
Cyanidioschyzon_merolae 2 2
Porphyridium_purpureum_02_2012 1 1
Thalassiosira_pseudonana_CCMP1335 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1
Leptolyngbya_sp._PCC_7376 5 5
Pseudanabaena_sp._PCC_7367 3 3
Acaryochloris_marina_MBIC11017 6 6
Synechocystis_sp._PCC_6803 5 5
Thermosynechococcus_sp._NK55 5 5
Thermosynechococcus_elongatus_BP-1 5 5
Synechococcus_sp._PCC_7502 3 3
Synechococcus_sp._PCC_6312 4 4
Synechococcus_sp._CC9311 6 6
Synechococcus_elongatus_PCC_7942 5 5
Prochlorococcus_marinus_str._MIT_9515 3 3
Microcoleus_sp._PCC_7113 8 8
Trichodesmium_erythraeum_IMS101 4 4
Geitlerinema_sp._PCC_7407 5 5
Cyanothece_sp._PCC_8802 6 6
Gloeocapsa_sp._PCC_7428 7 7
Halothece_sp._PCC_7418 7 7
Microcystis_aeruginosa_NIES-843 7 7
Gloeobacter_violaceus_PCC_7421 6 6
Rivularia_sp._PCC_7116 8 8
Calothrix_sp._PCC_7507 9 9
Anabaena_variabilis_ATCC_29413 8 8
'Nostoc_azollae'_0708 4 4
Nostoc_sp._PCC_7107 5 5
Nostoc_punctiforme_PCC_73102 7 7
Nostoc_sp._PCC_7120 7 7
Nostoc_sp._PCC_7524 7 7
Anabaena_sp._90 5 5
Roseiflexus_sp._RS-1 2 1
Roseiflexus_castenholzii_DSM_13941 2 1
Chloroflexus_sp._MS-G 2 2
Chloroflexus_sp._Y-400-fl 2 2
Chloroflexus_aggregans_DSM_9485 2 2
Chloroflexus_aurantiacus_J-10-fl 2 2
Myxococcus_fulvus_HW-1 1 1
Rubrivivax_gelatinosus_IL144 2 2
Brevundimonas_subvibrioides_ATCC_15264 2 2
Dinoroseobacter_shibae_DFL_12 2 2
Jannaschia_sp._CCS1 2 2
Roseobacter_litoralis_Och_149 2 2
Roseobacter_denitrificans_OCh_114 2 2
Rhodobacter_sphaeroides_ATCC_17029 2 2
Rhodobacter_capsulatus_SB_1003 2 2
Rhodospirillum_photometricum_DSM_122 2 2
Rhodospirillum_centenum_SW 2 2
Rhodospirillum_rubrum_F11 2 2
Acidiphilium_multivorum_AIU301 2 2
Methylobacterium_chloromethanicum_CM4 2 2
Methylobacterium_extorquens_AM1 2 2
Methylobacterium_sp._4-46 2 2
Methylobacterium_populi_BJ001 2 2
Methylobacterium_radiotolerans_JCM_2831 2 2
Methylocella_silvestris_BL2 2 2
Rhodomicrobium_vannielii_ATCC_17100 2 2
Rhodopseudomonas_palustris_BisA53 2 2
Bradyrhizobium_sp._ORS_278 2 2
Halorhodospira_halophila_SL1 2 2
Allochromatium_vinosum_DSM_180 2 2
Thiocystis_violascens_DSM_198 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Hordeum_vulgare_22   (Domesticated barley)   2 2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2 2
Chroococcidiopsis_thermalis_PCC_7203 8 8
Chamaesiphon_minutus_PCC_6605 4 4
Synechocystis_sp._PCC_6803_substr._PCC-P 5 5
Synechocystis_sp._PCC_6803_substr._PCC-N 5 5
Synechocystis_sp._PCC_6803_substr._GT-I 5 5
Synechocystis_sp._PCC_6803 5 5
Cyanobium_gracile_PCC_6307 5 5
Dactylococcopsis_salina_PCC_8305 5 5
Synechococcus_sp._JA-2-3B'a(2-13) 5 5
Synechococcus_sp._JA-3-3Ab 6 6
Synechococcus_sp._CC9902 6 6
Synechococcus_sp._RCC307 6 6
Synechococcus_sp._CC9605 5 5
Synechococcus_sp._WH_8102 6 6
Synechococcus_sp._WH_7803 6 6
Synechococcus_sp._PCC_7002 5 5
Synechococcus_elongatus_PCC_6301 5 5
Prochlorococcus_marinus_str._NATL1A 4 4
Prochlorococcus_marinus_str._MIT_9301 2 2
Prochlorococcus_marinus_str._AS9601 3 3
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 2 2
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 2 2
Prochlorococcus_marinus_str._MIT_9215 2 2
Prochlorococcus_marinus_str._MIT_9211 2 2
Prochlorococcus_marinus_str._MIT_9313 3 3
Prochlorococcus_marinus_str._MIT_9312 3 3
Prochlorococcus_marinus_str._MIT_9303 3 3
Prochlorococcus_marinus_str._NATL2A 4 4
Crinalium_epipsammum_PCC_9333 4 4
Oscillatoria_nigro-viridis_PCC_7112 9 9
Oscillatoria_acuminata_PCC_6304 7 7
Arthrospira_platensis_NIES-39 7 7
Cyanothece_sp._PCC_7822 6 6
Cyanothece_sp._PCC_7425 5 5
Cyanothece_sp._PCC_7424 7 7
Cyanothece_sp._ATCC_51142 7 7
Cyanothece_sp._PCC_8801 6 6
Cyanobacterium_aponinum_PCC_10605 6 6
Cyanobacterium_stanieri_PCC_7202 4 4
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 7 7
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 9 9
Stanieria_cyanosphaera_PCC_7437 6 6
Calothrix_parietina_Calothrix_sp._PCC_6303 6 6
Cylindrospermum_stagnale_PCC_7417 6 6
Anabaena_cylindrica_PCC_7122 7 7
Rhodobacter_sphaeroides_KD131 2 2
Rhodobacter_sphaeroides_ATCC_17025 2 2
Rhodobacter_sphaeroides_2.4.1 2 2
Rhodospirillum_rubrum_ATCC_11170 2 2
Methylobacterium_extorquens_DM4 2 2
Methylobacterium_extorquens_PA1 2 2
Rhodopseudomonas_palustris_DX-1 2 2
Rhodopseudomonas_palustris_TIE-1 2 2
Rhodopseudomonas_palustris_HaA2 2 2
Rhodopseudomonas_palustris_BisB5 2 2
Rhodopseudomonas_palustris_BisB18 2 2
Rhodopseudomonas_palustris_CGA009 2 2
Bradyrhizobium_sp._S23321 2 2
Bradyrhizobium_sp._BTAi1 2 2
Bradyrhizobium_oligotrophicum_S58 2 2
Thioflavicoccus_mobilis_8321 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   2 2

Others
Genome     Number   Proteins
Lotus_japonicus__(Early_assembly) 16 16
Malus_x_domestica_(Duplicate)   (Apple)   2 2
Ricinus_communis__(Early_assembly)   (Castor bean)   14 14
Nicotiana_benthamiana_0.4.4_(Early_draft) 24 23
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   18 18
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   18 18
Guillardia_theta_(nucleomorph) 2 2
NCBI_plasmid_sequences_(Plasmids) 7 7
PDB_chains_(SCOP_1.75)_(PDB) 38 38
NCBI_viral_sequences_(Viral) 74 74
STRING_v9.0.5_(STRING) 300 295
Protein_Data_Bank_(all_PDB_sequenc) 462 462
UniProt__viral_sequences_(Viral) 828 828
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1251 1251
NCBI_2017_08_genome 2675 2669
Uniprot_2018_03_genome 24454 24386

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]