SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for PsbU/PolX domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a PsbU/PolX domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   17 17
Pan_troglodytes_76_2.1.4   (Chimpanzee)   4 4
Gorilla_gorilla_76_3.1   (Western gorilla)   5 5
Pongo_abelii_76_2   (Sumatran orangutan)   4 4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4 4
Papio_anubis_76   (Olive baboon)   4 4
Macaca_mulatta_76_1   (Rhesus monkey)   6 6
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   5 5
Otolemur_garnettii_76_3   (Small-eared galago)   4 4
Microcebus_murinus_76_1   (Gray mouse lemur)   4 4
Rattus_norvegicus_76_5.0   (Norway rat)   4 4
Mus_musculus_76_38   (House mouse)   6 6
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3 3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4 4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   4 4
Cavia_porcellus_76_3   (Domestic guinea pig)   4 4
Oryctolagus_cuniculus_76_2   (Rabbit)   5 5
Ochotona_princeps_76   (American pika)   3 3
Tupaia_belangeri_76   (Northern tree shrew)   3 3
Sus_scrofa_76_10.2   (Pig)   5 5
Bos_taurus_76_3.1   (Cattle)   5 5
Ovis_aries_76_3.1   (Sheep)   4 4
Vicugna_pacos_76_1   (Alpaca)   3 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   4 4
Ailuropoda_melanoleuca_76_1   (Giant panda)   4 4
Canis_familiaris_76_3.1   (Dog)   3 3
Felis_catus_76_6.2   (Domestic cat)   5 5
Equus_caballus_76_2   (Horse)   4 4
Myotis_lucifugus_76_2.0   (Little brown bat)   4 4
Pteropus_vampyrus_76_1   (Large flying fox)   3 3
Sorex_araneus_76_1   (European shrew)   2 2
Erinaceus_europaeus_76   (Western European hedgehog)   4 4
Procavia_capensis_76_1   (Cape rock hyrax)   2 2
Loxodonta_africana_76_3   (African savanna elephant)   5 5
Echinops_telfairi_76   (Small Madagascar hedgehog)   4 4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   5 5
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5 5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4 4
Ornithorhynchus_anatinus_76_5   (Platypus)   5 5
Saccoglossus_kowalevskii_v3.0 5 5
Petromyzon_marinus_76_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_76_2   (Turkey)   4 4
Gallus_gallus_76_4   (Chicken)   2 2
Anas_platyrhynchos_76_1.0   (Mallard)   3 3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3 3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3 3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4 4
Anolis_carolinensis_76_2.0   (Green anole)   3 3
Xenopus_laevis_   (African clawed frog)   8 8
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   7 7
Latimeria_chalumnae_76_1   (Coelacanth)   3 3
Lepisosteus_oculatus_76   (Spotted gar)   4 4
Gadus_morhua_76_1   (Atlantic cod)   4 4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   5 5
Takifugu_rubripes_76_4   (Torafugu)   13 13
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   6 6
Oryzias_latipes_76_1   (Japanese medaka)   4 4
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   4 4
Poecilia_formosa_76   (Amazon molly)   4 4
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5 5
Astyanax_mexicanus_76   (Mexican tetra)   4 4
Danio_rerio_76_9   (Zebrafish)   6 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3 3
Adineta_vaga 8 8
Octopus_bimaculoides_280 3 3
Crassostrea_gigas_22   (Pacific oyster)   3 3
Lottia_gigantea_   (Owl limpet)   3 3
Helobdella_robusta_ 2 2
Capitella_sp._I_ 3 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Heliconius_melpomene_   (Postman butterfly)   1 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Drosophila_ananassae_1.3 1 1
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 2 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Trichinella_spiralis_22 1 1
Mnemiopsis_leidyi   (Sea walnut)   1 1
Acropora_digitifera_v1.0 4 4
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 2
Amphimedon_queenslandica 3 3
Trichoplax_adhaerens_ 3 3
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 3 3
Mortierella_verticillata_NRRL_6337_ 1 1
Rhizopus_oryzae_RA_99-880_ 1 1
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 2 2
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 1 1
Ustilago_maydis_ 2 2
Mixia_osmundae_IAM_14324_v1.0 1 1
Rhodotorula_graminis_WP1_v1.0 2 2
Sporobolomyces_roseus_IAM_13481_ 3 3
Microbotryum_violaceum_22 2 2
Sphaerobolus_stellatus_v1.0 1 1
Piloderma_croceum_F_1598_v1.0 4 4
Serpula_lacrymans_var._lacrymans_S7.9_ 3 3
Coniophora_puteana 3 3
Hydnomerulius_pinastri_v2.0 4 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 2 2
Pisolithus_microcarpus_441_v1.0 3 3
Pisolithus_tinctorius_Marx_270_v1.0 3 3
Scleroderma_citrinum_Foug_A_v1.0 3 3
Coprinopsis_cinerea_okayama7_130_v3 3 3
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 4 4
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3 3
Galerina_marginata_v1.0 4 4
Hebeloma_cylindrosporum_h7_v2.0 3 3
Laccaria_bicolor_S238N-H82_ 3 3
Agaricus_bisporus_var._bisporus_ 2 2
Schizophyllum_commune_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 4 4
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 4 4
Punctularia_strigosozonata_v1.0 2 2
Sebacina_vermifera_MAFF_305830_v1.0 4 4
Fomitiporia_mediterranea_v1.0 2 2
Tulasnella_calospora_AL13/4D_v1.0 1 1
Postia_placenta_ 6 6
Wolfiporia_cocos_MD-104_SS10__v1.0 2 2
Fomitopsis_pinicolav1.0 2 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2 2
Dichomitus_squalens 3 3
Trametes_versicolor_v1.0 5 5
Tremella_mesenterica_   (Witches' butter)   3 3
Daldinia_eschscholzii_EC12_v1.0 2 2
Apiospora_montagnei_NRRL_25634_v1.0 2 2
Magnaporthe_poae_ATCC_64411_22 2 2
Magnaporthe_grisea_70-15_ 2 2
Podospora_anserina_ 2 2
Sporotrichum_thermophile_ATCC_42464_ 2 2
Thielavia_terrestris_NRRL_8126_ 2 2
Chaetomium_globosum_CBS_148.51_ 2 2
Neurospora_tetrasperma_ 2 2
Neurospora_discreta_FGSC_8579_ 2 2
Neurospora_crassa_OR74A_ 2 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 2 2
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 2 2
Fusarium_graminearum_ 2 2
Nectria_haematococca_mpVI_ 2 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2 2
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 2 2
Trichoderma_atroviride_ 2 2
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 2 2
Trichoderma_virens_Gv29-8_ 2 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 2 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Botrytis_cinerea_B05.10_ 2 2
Sclerotinia_sclerotiorum_ 2 2
Didymella_exigua_CBS_183.55_v1.0 2 2
Leptosphaeria_maculans_22 2 2
Setosphaeria_turcica_v1.0 2 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2 2
Cochliobolus_victoriae_FI3_v1.0 2 2
Cochliobolus_carbonum_26-R-13_v1.0 2 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2 2
Alternaria_brassicicola_ 2 2
Cochliobolus_lunatus_m118_v2.0 2 2
Pyrenophora_teres_f._teres_22 2 2
Pyrenophora_tritici-repentis_ 2 2
Stagonospora_nodorum_ 2 2
Mycosphaerella_graminicola_IPO323_ 2 2
Zasmidium_cellare_ATCC_36951_v1.0 2 2
Dothistroma_septosporum 2 2
Septoria_musiva_v1.0 2 2
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2 2
Paracoccidioides_brasiliensis_Pb18_ 2 2
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 2 2
Trichophyton_equinum_CBS_127.97_ 2 2
Trichophyton_verrucosum_HKI_0517_ 2 2
Arthroderma_benhamiae_CBS_112371_ 2 2
Trichophyton_tonsurans_CBS_112818_ 2 2
Trichophyton_rubrum_CBS_118892_ 2 2
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 2 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 2 2
Aspergillus_acidus_v1.0 2 2
Aspergillus_fumigatus_Af293 2 2
Aspergillus_brasiliensis_v1.0 2 2
Aspergillus_nidulans_FGSC_A4_ 2 2
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 2 2
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 2 2
Neosartorya_fischeri_NRRL_181_ 2 2
Aspergillus_terreus_NIH2624_ 2 2
Aspergillus_tubingensis_v1.0 2 2
Aspergillus_wentii_v1.0 2 2
Aspergillus_oryzae_RIB40_ 2 2
Aspergillus_niger_22 2 2
Aspergillus_niger_ATCC_1015_ 2 2
Aspergillus_flavus_NRRL3357_ 2 2
Aspergillus_clavatus_NRRL_1_ 2 2
Penicillium_marneffei_ATCC_18224_ 2 2
Tuber_melanosporum_Mel28_22 2 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2 2
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Candida_dubliniensis_CD36_ 1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1 1
Pichia_pastoris_GS115_ 1 1
Yarrowia_lipolytica_CLIB122 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Candida_glabrata_CBS138 1 1
Kluyveromyces_thermotolerans_CBS_6340 1 1
Kluyveromyces_waltii 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_cryophilus_OY26_22 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   1 1
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 2 2
Spizellomyces_punctatus_DAOM_BR117_ 2 2
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 1 1
Selaginella_moellendorffii_ 4 4
Eucalyptus_grandis_v201   (Rose gum)   1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Gossypium_raimondii_v221 5 5
Citrus_clementina_v165 4 4
Citrus_sinensis_v154   (Sweet orange)   8 8
Thellungiella_halophila_v173 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1 1
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   2 2
Arabidopsis_thaliana_10   (Thale cress)   1 1
Carica_papaya_   (Papaya)   1 1
Medicago_truncatula_   (Barrel medic)   2 2
Phaseolus_vulgaris_v186   (French bean)   5 5
Glycine_max_v109   (Soybean)   2 2
Cucumis_sativus_v122   (Cucumber)   1 1
Fragaria_vesca_   (Wild strawberry)   2 2
Malus_domestica_v196   (Apple)   1 1
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   2 2
Manihot_esculenta_v147   (Cassava)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   2 2
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Actinidia_chinensis_Hongyang_ 1 1
Aquilegia_coerulea_v195 1 1
Triticum_urartu_22 1 1
Triticum_aestivum_22   (Bread wheat)   3 3
Aegilops_tauschii_22 1 1
Brachypodium_distachyon_   (Stiff brome)   1 1
Oryza_barthii_22   (African wild rice)   1 1
Oryza_meridionalis_22 1 1
Oryza_glumaepatula_22 1 1
Oryza_glaberrima   (African rice)   1 1
Oryza_punctata_22 1 1
Oryza_nivara_22 1 1
Oryza_brachyantha_22   (Malo sina)   1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2 2
Oryza_sativa_v193   (Rice)   2 2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1 1
Panicum_virgatum_v202   (Switchgrass)   1 1
Setaria_italica_v164   (Foxtail millet)   1 1
Zea_mays_v181   (Maize)   1 1
Sorghum_bicolor_   (Sorghum)   1 1
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   1 1
Amborella_trichopoda_22 1 1
Physcomitrella_patens 1 1
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 3 3
Chlorella_vulgaris_ 2 2
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Cyanidioschyzon_merolae_strain_10D_22 2 2
Cyanidioschyzon_merolae 2 2
Porphyridium_purpureum_02_2012 2 2
Thecamonas_trahens_ATCC_50062_ 4 4
Bigelowiella_natans_CCMP2755_22 1 1
Cyanophora_paradoxa_ 2 2
Leishmania_mexicana_2.4 2 2
Leishmania_major_strain_Friedlin_ 2 2
Leishmania_infantum_JPCM5_2.4 2 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2 2
Trypanosoma_vivax_ 2 2
Trypanosoma_cruzi_strain_CL_Brener 2 2
Trypanosoma_congolense_2.4 2 2
Trypanosoma_brucei_gambiense_v4.1 2 2
Trypanosoma_brucei_TREU927_v4.1 2 2
Ectocarpus_siliculosus 4 4
Aureococcus_anophagefferens_ 3 3
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 6 5
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 2 2
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 10 10
Phytophthora_capsici_ 1 1
Hyaloperonospora_arabidopsidis_22 5 3
Phaeodactylum_tricornutumCCAP_1055/1 2 2
Fragilariopsis_cylindrus 5 5
Thalassiosira_pseudonana_CCMP1335 3 3
Perkinsus_marinus_ATCC_50983_ 1 1
Paramecium_tetraurelia_ 4 4
Tetrahymena_thermophila_SB210_1_ 1 1
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 8 6
Naegleria_gruberi_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 4 4
Emiliania_huxleyi_CCMP1516_ 4 4
Leptolyngbya_sp._PCC_7376 3 2
Pseudanabaena_sp._PCC_7367 1 1
Acaryochloris_marina_MBIC11017 5 5
Synechocystis_sp._PCC_6803 2 2
Thermosynechococcus_sp._NK55 1 1
Thermosynechococcus_elongatus_BP-1 1 1
Synechococcus_sp._PCC_7502 2 2
Synechococcus_sp._PCC_6312 2 2
Synechococcus_sp._CC9311 1 1
Synechococcus_elongatus_PCC_7942 1 1
Microcoleus_sp._PCC_7113 3 3
Trichodesmium_erythraeum_IMS101 2 2
Geitlerinema_sp._PCC_7407 1 1
Cyanothece_sp._PCC_8802 1 1
Gloeocapsa_sp._PCC_7428 1 1
cyanobacterium_UCYN-A 1 1
Halothece_sp._PCC_7418 2 2
Microcystis_aeruginosa_NIES-843 1 1
Gloeobacter_violaceus_PCC_7421 3 3
Rivularia_sp._PCC_7116 3 3
Calothrix_sp._PCC_7507 3 3
Anabaena_variabilis_ATCC_29413 3 3
'Nostoc_azollae'_0708 3 3
Nostoc_sp._PCC_7107 3 3
Nostoc_punctiforme_PCC_73102 4 4
Nostoc_sp._PCC_7120 3 3
Nostoc_sp._PCC_7524 1 1
Anabaena_sp._90 2 2
Mycoplasma_pulmonis_UAB_CTIP 1 1
Stackebrandtia_nassauensis_DSM_44728 1 1
Pseudonocardia_dioxanivorans_CB1190 1 1
Actinoplanes_sp._N902-109 1 1
Corynebacterium_diphtheriae_NCTC_13129 1 1
Deinococcus_radiodurans_R1 1 1
Thermus_sp._CCB_US3_UF1 1 1
Thermus_scotoductus_SA-01 1 1
Thermus_thermophilus_HB27 1 1
Natranaerobius_thermophilus_JW/NM-WN-LF 2 2
Clostridium_clariflavum_DSM_19732 1 1
Desulfotomaculum_reducens_MI-1 1 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 1 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1 1
Clostridium_sp._BNL1100 1 1
Acetohalobium_arabaticum_DSM_5501 1 1
Halothermothrix_orenii_H_168 1 1
Halanaerobium_hydrogeniformans 1 1
Solibacillus_silvestris_StLB046 1 1
Bacillus_pseudofirmus_OF4 1 1
Macrococcus_caseolyticus_JCSC5402 1 1
Staphylococcus_pseudintermedius_HKU10-03 1 1
Staphylococcus_saprophyticus_subsp._saprophyticus_ATCC_15305 1 1
Staphylococcus_lugdunensis_HKU09-01 1 1
Staphylococcus_haemolyticus_JCSC1435 1 1
Staphylococcus_epidermidis_RP62A 1 1
Staphylococcus_carnosus_subsp._carnosus_TM300 1 1
Staphylococcus_aureus_subsp._aureus_JH1 1 1
Staphylococcus_aureus 1 1
Gemmatimonas_aurantiaca_T-27 1 1
Niastella_koreensis_GR20-10 1 1
Rhodothermus_marinus_DSM_4252 1 1
Porphyromonas_asaccharolytica_DSM_20707 1 1
Flavobacterium_psychrophilum_JIP02/86 1 1
Phycisphaera_mikurensis_NBRC_102666 1 1
Planctomyces_limnophilus_DSM_3776 1 1
Thermovirga_lienii_DSM_17291 1 1
Anaerobaculum_mobile_DSM_13181 1 1
Marinitoga_piezophila_KA3 2 2
Kosmotoga_olearia_TBF_19.5.1 1 1
Fervidobacterium_nodosum_Rt17-B1 1 1
Thermotoga_lettingae_TMO 1 1
Thermotoga_thermarum_DSM_5069 1 1
Thermotoga_sp._RQ2 1 1
Thermotoga_naphthophila_RKU-10 1 1
Thermotoga_petrophila_RKU-1 1 1
Thermotoga_neapolitana_DSM_4359 1 1
Thermotoga_maritima_MSB8 1 1
Thermovibrio_ammonificans_HB-1 2 2
Desulfurobacterium_thermolithotrophum_DSM_11699 2 2
Persephonella_marina_EX-H1 1 1
Thermocrinis_albus_DSM_14484 1 1
Hydrogenobacter_thermophilus_TK-6 1 1
Granulicella_tundricola_MP5ACTX9 1 1
Granulicella_mallensis_MP5ACTX8 1 1
Candidatus_Koribacter_versatilis_Ellin345 3 3
Terriglobus_saanensis_SP1PR4 1 1
Terriglobus_roseus_DSM_18391 1 1
Acidobacterium_capsulatum_ATCC_51196 1 1
Candidatus_Nitrospira_defluvii 1 1
Leptospirillum_ferrooxidans_C2-3 1 1
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 1 1
Arcobacter_sp._L 1 1
Campylobacter_hominis_ATCC_BAA-381 1 1
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfovibrio_magneticus_RS-1 2 2
Geobacter_daltonii_FRC-32 1 1
Geobacter_lovleyi_SZ 1 1
Geobacter_bemidjiensis_Bem 1 1
Geobacter_metallireducens_GS-15 2 2
Pelobacter_propionicus_DSM_2379 1 1
Dechloromonas_aromatica_RCB 1 1
Verminephrobacter_eiseniae_EF01-2 1 1
Rhodoferax_ferrireducens_T118 1 1
Acidovorax_sp._KKS102 1 1
Azospirillum_brasilense_Sp245 1 1
Methylobacterium_chloromethanicum_CM4 2 2
Methylobacterium_extorquens_AM1 2 2
Methylobacterium_sp._4-46 3 3
Methylobacterium_populi_BJ001 2 2
Methylobacterium_nodulans_ORS_2060 2 2
Methylobacterium_radiotolerans_JCM_2831 3 3
Methylocella_silvestris_BL2 1 1
Rhodopseudomonas_palustris_BisA53 1 1
Nitrobacter_hamburgensis_X14 1 1
Shewanella_loihica_PV-4 1 1
Hahella_chejuensis_KCTC_2396 1 1
Marinomonas_sp._MWYL1 1 1
Marinomonas_mediterranea_MMB-1 1 1
Halorhodospira_halophila_SL1 1 1
Pyrobaculum_sp._1860 1 1
Pyrobaculum_calidifontis_JCM_11548 1 1
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Pyrobaculum_aerophilum_str._IM2 1 1
Pyrobaculum_islandicum_DSM_4184 1 1
halophilic_archaeon_DL31 1 1
Methanocella_arvoryzae_MRE50 1 1
Methanocella_conradii_HZ254 1 1
Methanosalsum_zhilinae_DSM_4017 1 1
Methanohalobium_evestigatum_Z-7303 1 1
Methanococcoides_burtonii_DSM_6242 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanocorpusculum_labreanum_Z 1 1
Methanoplanus_petrolearius_DSM_11571 1 1
Methanoculleus_marisnigri_JR1 1 1
Ferroglobus_placidus_DSM_10642 1 1
Archaeoglobus_profundus_DSM_5631 1 1
Archaeoglobus_veneficus_SNP6 1 1
Thermococcus_sp._4557 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Thermococcus_barophilus_MP 1 1
Pyrococcus_sp._ST04 1 1
Pyrococcus_yayanosii_CH1 1 1
Pyrococcus_horikoshii_OT3 1 1
Pyrococcus_abyssi_GE5 1 1
Pyrococcus_furiosus_COM1 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halopiger_xanaduensis_SH-6 1 1
Haloterrigena_turkmenica_DSM_5511 1 1
Natrinema_sp._J7-2 1 1
Natrialba_magadii_ATCC_43099 1 1
Halorubrum_lacusprofundi_ATCC_49239 1 1
Haloquadratum_walsbyi_DSM_16790 1 1
Halogeometricum_borinquense_DSM_11551 1 1
Haloferax_mediterranei_ATCC_33500 1 1
Haloferax_volcanii_DS2 1 1
Halomicrobium_mukohataei_DSM_12286 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 1 1
Halalkalicoccus_jeotgali_B3 1 1
Halobacterium_salinarum_R1 1 1
Halobacterium_sp._NRC-1 1 1
Methanothermus_fervidus_DSM_2088 1 1
Aciduliprofundum_sp._MAR08-339 1 1
Aciduliprofundum_boonei_T469 2 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   9 9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Cryptococcus_neoformans_var._grubii_H99_ 3 3
Cryptococcus_neoformans_B-3501A_ 2 2
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 2 2
Paracoccidioides_brasiliensis_Pb03_ 2 2
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 2 2
Histoplasma_capsulatum_H143 2 2
Histoplasma_capsulatum_H88 2 2
Histoplasma_capsulatum_G186AR 2 2
Aspergillus_fumigatus_A1163_ 2 2
Schizosaccharomyces_pombe_972h-_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1
Trypanosoma_brucei_Lister_427_v4.1 2 2
Chroococcidiopsis_thermalis_PCC_7203 3 3
Chamaesiphon_minutus_PCC_6605 3 3
Synechocystis_sp._PCC_6803_substr._PCC-P 2 2
Synechocystis_sp._PCC_6803_substr._PCC-N 2 2
Synechocystis_sp._PCC_6803_substr._GT-I 2 2
Synechocystis_sp._PCC_6803 2 2
Cyanobium_gracile_PCC_6307 1 1
Dactylococcopsis_salina_PCC_8305 1 1
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Synechococcus_sp._JA-3-3Ab 1 1
Synechococcus_sp._CC9902 2 2
Synechococcus_sp._RCC307 2 2
Synechococcus_sp._CC9605 1 1
Synechococcus_sp._WH_8102 2 2
Synechococcus_sp._WH_7803 1 1
Synechococcus_sp._PCC_7002 3 3
Synechococcus_elongatus_PCC_6301 1 1
Prochlorococcus_marinus_str._MIT_9313 1 1
Prochlorococcus_marinus_str._MIT_9303 1 1
Crinalium_epipsammum_PCC_9333 4 4
Oscillatoria_nigro-viridis_PCC_7112 2 2
Oscillatoria_acuminata_PCC_6304 1 1
Arthrospira_platensis_NIES-39 1 1
Cyanothece_sp._PCC_7822 2 2
Cyanothece_sp._PCC_7425 3 3
Cyanothece_sp._PCC_7424 2 2
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 1 1
Cyanobacterium_aponinum_PCC_10605 2 2
Cyanobacterium_stanieri_PCC_7202 2 2
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 6 5
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1 1
Stanieria_cyanosphaera_PCC_7437 2 2
Calothrix_parietina_Calothrix_sp._PCC_6303 3 3
Cylindrospermum_stagnale_PCC_7417 3 3
Anabaena_cylindrica_PCC_7122 3 3
Corynebacterium_diphtheriae_BH8 1 1
Corynebacterium_diphtheriae_INCA_402 1 1
Corynebacterium_diphtheriae_VA01 1 1
Corynebacterium_diphtheriae_HC04 1 1
Corynebacterium_diphtheriae_HC03 1 1
Corynebacterium_diphtheriae_HC02 1 1
Corynebacterium_diphtheriae_HC01 1 1
Corynebacterium_diphtheriae_241 1 1
Corynebacterium_diphtheriae_CDCE_8392 1 1
Corynebacterium_diphtheriae_PW8 1 1
Corynebacterium_diphtheriae_C7_(beta) 1 1
Corynebacterium_diphtheriae_31A 1 1
Thermus_oshimai_JL-2 1 1
Thermus_thermophilus_JL-18 1 1
Thermus_thermophilus_SG0.5JP17-16 1 1
Thermus_thermophilus_HB8 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Halobacteroides_halobius_DSM_5150 3 2
Paenibacillus_polymyxa_CR1 1 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 1 1
Staphylococcus_pseudintermedius_ED99 1 1
Staphylococcus_pasteuri_SP1 1 1
Staphylococcus_lugdunensis_N920143 1 1
Staphylococcus_warneri_SG1 1 1
Staphylococcus_epidermidis_ATCC_12228 1 1
Staphylococcus_aureus_CA-347 1 1
Staphylococcus_aureus_Bmb9393 1 1
Staphylococcus_aureus_M1 1 1
Staphylococcus_aureus_08BA02176 1 1
Staphylococcus_aureus_ST228/18412 1 1
Staphylococcus_aureus_ST228/18341 1 1
Staphylococcus_aureus_ST228/16125 1 1
Staphylococcus_aureus_ST228/16035 1 1
Staphylococcus_aureus_ST228/15532 1 1
Staphylococcus_aureus_ST228/10497 1 1
Staphylococcus_aureus_ST228/10388 1 1
Staphylococcus_aureus_04-02981 1 1
Staphylococcus_aureus_RF122 1 1
Staphylococcus_aureus_subsp._aureus_Z172 1 1
Staphylococcus_aureus_subsp._aureus_6850 1 1
Staphylococcus_aureus_subsp._aureus_SA957 1 1
Staphylococcus_aureus_subsp._aureus_CN1 1 1
Staphylococcus_aureus_subsp._aureus_SA40 1 1
Staphylococcus_aureus_subsp._aureus_11819-97 1 1
Staphylococcus_aureus_subsp._aureus_M013 1 1
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1 1
Staphylococcus_aureus_subsp._aureus_VC40 1 1
Staphylococcus_aureus_subsp._aureus_T0131 1 1
Staphylococcus_aureus_subsp._aureus_LGA251 1 1
Staphylococcus_aureus_subsp._aureus_ECT-R_2 1 1
Staphylococcus_aureus_subsp._aureus_JKD6159 1 1
Staphylococcus_aureus_subsp._aureus_ED133 1 1
Staphylococcus_aureus_subsp._aureus_ED98 1 1
Staphylococcus_aureus_subsp._aureus_TW20 1 1
Staphylococcus_aureus_subsp._aureus_55/2053 1 1
Staphylococcus_aureus_subsp._aureus_TCH60 1 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1 1
Staphylococcus_aureus_subsp._aureus_71193 1 1
Staphylococcus_aureus_subsp._aureus_S0385 1 1
Staphylococcus_aureus_subsp._aureus_str._Newman 1 1
Staphylococcus_aureus_subsp._aureus_Mu3 1 1
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1 1
Staphylococcus_aureus_subsp._aureus_JH9 1 1
Staphylococcus_aureus_subsp._aureus_MSSA476 1 1
Staphylococcus_aureus_subsp._aureus_MRSA252 1 1
Staphylococcus_aureus_subsp._aureus_MW2 1 1
Staphylococcus_aureus_subsp._aureus_N315 1 1
Staphylococcus_aureus_subsp._aureus_Mu50 1 1
Staphylococcus_aureus_subsp._aureus_COL 1 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1 1
Salinibacter_ruber_DSM_13855 1 1
Singulisphaera_acidiphila_DSM_18658 3 2
Thermotoga_maritima_MSB8 1 1
Hydrogenobacter_thermophilus_TK-6 1 1
Leptospirillum_ferriphilum_ML-04 1 1
Phaeobacter_gallaeciensis_DSM_17395 1 1
Methylobacterium_extorquens_DM4 2 2
Methylobacterium_extorquens_PA1 2 2
Rhodopseudomonas_palustris_DX-1 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_HaA2 1 1
Rhodopseudomonas_palustris_BisB18 1 1
Rhodopseudomonas_palustris_CGA009 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Pseudomonas_fluorescens_F113 1 1
Methanomethylovorans_hollandica_DSM_15978 1 1
Methanolobus_psychrophilus_R15 1 1
Thermococcus_sp._AM4 1 1
Thermococcus_sp._CL1 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 1 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1 1
Halovivax_ruber_XH-70 1 1
Natrinema_pellirubrum_DSM_15624 1 1
Natronococcus_occultus_SP4 1 1
Natronobacterium_gregoryi_SP2 1 1
Haloquadratum_walsbyi_C23 1 1
Halorhabdus_tiamatea_SARL4B 1 1
Natronomonas_moolapensis_8.8.11 1 1
Haloarcula_hispanica_N601 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   3 3
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4 4
Gorilla_gorilla_69_3.1   (Western gorilla)   4 4
Pongo_abelii_69_2   (Sumatran orangutan)   4 4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3 3
Macaca_mulatta_69_1   (Rhesus monkey)   3 3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3 3
Otolemur_garnettii_69_3   (Small-eared galago)   4 4
Microcebus_murinus_69_1   (Gray mouse lemur)   4 4
Rattus_norvegicus_69_3.4   (Norway rat)   4 4
Mus_musculus_69_38   (House mouse)   4 4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3 3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4 4
Cavia_porcellus_69_3   (Domestic guinea pig)   4 4
Oryctolagus_cuniculus_69_2   (Rabbit)   4 4
Ochotona_princeps_69   (American pika)   3 3
Tupaia_belangeri_69   (Northern tree shrew)   3 3
Sus_scrofa_69_10.2   (Pig)   4 4
Bos_taurus_69_3.1   (Cattle)   4 4
Vicugna_pacos_69_1   (Alpaca)   3 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   4 4
Ailuropoda_melanoleuca_69_1   (Giant panda)   4 4
Canis_familiaris_69_3.1   (Dog)   3 3
Felis_catus_69   (Domestic cat)   2 2
Equus_caballus_69_2   (Horse)   4 4
Myotis_lucifugus_69_2.0   (Little brown bat)   4 4
Pteropus_vampyrus_69_1   (Large flying fox)   3 3
Sorex_araneus_69_1   (European shrew)   2 2
Erinaceus_europaeus_69   (Western European hedgehog)   4 4
Procavia_capensis_69_1   (Cape rock hyrax)   2 2
Loxodonta_africana_69_3   (African savanna elephant)   4 4
Echinops_telfairi_69   (Small Madagascar hedgehog)   4 4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   3 3
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   4 4
Ornithorhynchus_anatinus_69_5   (Platypus)   4 4
Petromyzon_marinus_69_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_69_2   (Turkey)   3 3
Gallus_gallus_69_2   (Chicken)   3 3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3 3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3 3
Anolis_carolinensis_69_2.0   (Green anole)   3 3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3 3
Latimeria_chalumnae_69_1   (Coelacanth)   3 3
Gadus_morhua_69_1   (Atlantic cod)   4 4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   4 4
Takifugu_rubripes_69_4   (Torafugu)   4 4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4 4
Oryzias_latipes_69_1   (Japanese medaka)   4 4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   4 4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4 4
Danio_rerio_69_9   (Zebrafish)   4 4
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   20 20
Homo_sapiens__(NCBI_version)   (Human)   7 7
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   4 4
Moniliophthora_perniciosa_FA553__(Genome_survey) 3 3
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 2 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Phoenix_dactylifera__(Early_draft)   (Date palm)   1 1
NCBI_plasmid_sequences_(Plasmids) 5 5
STRING_v9.0.5_(STRING) 356 356
Protein_Data_Bank_(all_PDB_sequenc) 620 620
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1235 1235
Uniprot_2018_03_genome 5338 5297
NCBI_2017_08_genome 13882 13868
NCBI_viral_sequences_(Viral) 10 10
TargetDB__(Targets) 12 12
UniProt__viral_sequences_(Viral) 2 2
Protozoadb_2010_08_(Protozoadb) 14 14
PDB_chains_(SCOP_1.75)_(PDB) 16 16

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