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Domain combinations for FF domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a FF domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   46 17
Pan_troglodytes_76_2.1.4   (Chimpanzee)   19 6
Gorilla_gorilla_76_3.1   (Western gorilla)   30 9
Pongo_abelii_76_2   (Sumatran orangutan)   20 7
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   15 6
Papio_anubis_76   (Olive baboon)   24 7
Macaca_mulatta_76_1   (Rhesus monkey)   36 11
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   52 15
Otolemur_garnettii_76_3   (Small-eared galago)   17 5
Microcebus_murinus_76_1   (Gray mouse lemur)   12 6
Rattus_norvegicus_76_5.0   (Norway rat)   23 7
Mus_musculus_76_38   (House mouse)   43 14
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   17 6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   18 6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   15 6
Cavia_porcellus_76_3   (Domestic guinea pig)   18 6
Oryctolagus_cuniculus_76_2   (Rabbit)   17 5
Ochotona_princeps_76   (American pika)   16 6
Tupaia_belangeri_76   (Northern tree shrew)   16 6
Sus_scrofa_76_10.2   (Pig)   18 5
Bos_taurus_76_3.1   (Cattle)   22 6
Ovis_aries_76_3.1   (Sheep)   25 8
Vicugna_pacos_76_1   (Alpaca)   12 4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   17 6
Mustela_putorius_furo_76_1.0   (Domestic ferret)   19 6
Ailuropoda_melanoleuca_76_1   (Giant panda)   25 8
Canis_familiaris_76_3.1   (Dog)   50 14
Felis_catus_76_6.2   (Domestic cat)   20 7
Equus_caballus_76_2   (Horse)   29 8
Myotis_lucifugus_76_2.0   (Little brown bat)   21 7
Pteropus_vampyrus_76_1   (Large flying fox)   17 5
Sorex_araneus_76_1   (European shrew)   15 5
Erinaceus_europaeus_76   (Western European hedgehog)   8 3
Procavia_capensis_76_1   (Cape rock hyrax)   17 6
Loxodonta_africana_76_3   (African savanna elephant)   36 11
Echinops_telfairi_76   (Small Madagascar hedgehog)   15 6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   24 7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   13 6
Macropus_eugenii_76_1.0   (Tammar wallaby)   13 5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   12 4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   19 6
Ornithorhynchus_anatinus_76_5   (Platypus)   17 7
Saccoglossus_kowalevskii_v3.0 28 10
Petromyzon_marinus_76_7.0   (Sea lamprey)   16 4
Meleagris_gallopavo_76_2   (Turkey)   24 7
Gallus_gallus_76_4   (Chicken)   18 5
Anas_platyrhynchos_76_1.0   (Mallard)   14 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   20 8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   14 5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   17 6
Anolis_carolinensis_76_2.0   (Green anole)   14 5
Xenopus_laevis_   (African clawed frog)   11 5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   24 8
Latimeria_chalumnae_76_1   (Coelacanth)   28 7
Lepisosteus_oculatus_76   (Spotted gar)   27 9
Gadus_morhua_76_1   (Atlantic cod)   12 4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   21 5
Takifugu_rubripes_76_4   (Torafugu)   42 14
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   22 6
Oryzias_latipes_76_1   (Japanese medaka)   13 5
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   12 4
Poecilia_formosa_76   (Amazon molly)   14 6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   25 8
Astyanax_mexicanus_76   (Mexican tetra)   12 4
Danio_rerio_76_9   (Zebrafish)   34 10
Oikopleura_dioica 7 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   12 6
Ciona_intestinalis_76   (Vase tunicate)   8 3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   11 4
Adineta_vaga 30 6
Octopus_bimaculoides_280 31 7
Crassostrea_gigas_22   (Pacific oyster)   15 4
Lottia_gigantea_   (Owl limpet)   10 2
Helobdella_robusta_ 16 4
Capitella_sp._I_ 10 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8 2
Heliconius_melpomene_   (Postman butterfly)   4 2
Bombyx_mori_   (Domestic silkworm)   10 5
Nasonia_vitripennis_   (Jewel wasp)   10 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   54 14
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   10 2
Linepithema_humile_v1.1   (Argentine ant)   10 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   10 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   10 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   10 2
Atta_cephalotes_v1.1 10 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   10 2
Lucilia_cuprina   (Australian sheep blowfly)   9 2
Drosophila_grimshawi_1.3 10 4
Drosophila_willistoni_1.3 11 4
Drosophila_pseudoobscura_2.13 10 3
Drosophila_persimilis_1.3 10 3
Drosophila_suzukii 14 3
Drosophila_yakuba_1.3 11 5
Drosophila_simulans_1.3 7 4
Drosophila_sechellia_1.3 10 5
Drosophila_melanogaster_76_5   (Fruit fly)   28 10
Drosophila_erecta_1.3 10 4
Drosophila_ananassae_1.3 10 4
Drosophila_virilis_1.2 10 3
Drosophila_mojavensis_1.3 10 4
Megaselia_scalaris_22 3 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   11 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   11 5
Anopheles_darlingi_22   (American malaria mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   14 4
Tribolium_castaneum_3.0   (Red flour beetle)   10 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   9 2
Acyrthosiphon_pisum_   (Pea aphid)   9 2
Rhodnius_prolixus_22 8 2
Daphnia_pulex_   (Common water flea)   10 2
Strigamia_maritima_22 11 3
Sarcoptes_scabiei 9 2
Tetranychus_urticae_   (Two-spotted spider mite)   10 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8 2
Pristionchus_pacificus_ 8 2
Meloidogyne_incognita_   (Southern root-knot nematode)   17 6
Meloidogyne_hapla_ 5 1
Onchocerca_volvulus_22 11 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   20 5
Caenorhabditis_japonica_ 12 4
Caenorhabditis_brenneri_ 10 2
Caenorhabditis_remanei_ 10 2
Caenorhabditis_elegans_76_235   (Roundworm)   46 10
Caenorhabditis_briggsae_2 9 2
Trichinella_spiralis_22 11 2
Hymenolepis_microstoma_ 10 2
Echinococcus_multilocularis_ 10 2
Echinococcus_granulosus_ 10 2
Taenia_solium_   (Pork tapeworm)   9 2
Schistosoma_mansoni_ 10 2
Mnemiopsis_leidyi   (Sea walnut)   10 2
Thelohanellus_kitauei 4 1
Acropora_digitifera_v1.0 11 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   8 4
Hydra_vulgaris 10 3
Amphimedon_queenslandica 10 2
Trichoplax_adhaerens_ 10 2
Proterospongia_sp._ATCC_50818_ 7 2
Monosiga_brevicollis_ 6 2
Sphaeroforma_arctica_JP610_ 13 3
Capsaspora_owczarzaki_ATCC_30864_ 7 2
Conidiobolus_coronatus_NRRL28638_v1.0 6 2
Mortierella_verticillata_NRRL_6337_ 8 2
Phycomyces_blakesleeanus_ 7 2
Rhizopus_oryzae_RA_99-880_ 4 1
Mucor_circinelloides_ 2 1
Rhizomucor_miehei_CAU432_ 8 2
Malassezia_globosa_CBS_7966_ 10 4
Sporisorium_reilianum_22 6 2
Ustilago_maydis_ 6 2
Mixia_osmundae_IAM_14324_v1.0 11 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 7 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 6 2
Melampsora_laricis-populina_ 7 2
Rhodotorula_graminis_WP1_v1.0 6 2
Sporobolomyces_roseus_IAM_13481_ 7 2
Microbotryum_violaceum_22 7 2
Wallemia_sebi_v1.0 5 2
Sphaerobolus_stellatus_v1.0 9 2
Piloderma_croceum_F_1598_v1.0 8 2
Serpula_lacrymans_var._lacrymans_S7.9_ 4 1
Coniophora_puteana 9 2
Hydnomerulius_pinastri_v2.0 9 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 9 2
Pisolithus_microcarpus_441_v1.0 8 2
Pisolithus_tinctorius_Marx_270_v1.0 5 1
Scleroderma_citrinum_Foug_A_v1.0 9 2
Coprinopsis_cinerea_okayama7_130_v3 9 2
Pleurotus_ostreatus_   (Oyster mushroom)   7 2
Amanita_thiersii_Skay4041_v1.0 9 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   9 2
Galerina_marginata_v1.0 10 3
Hebeloma_cylindrosporum_h7_v2.0 9 2
Laccaria_bicolor_S238N-H82_ 6 2
Agaricus_bisporus_var._bisporus_ 9 2
Schizophyllum_commune_ 9 2
Stereum_hirsutum_FP-91666_SS1__v1.0 8 2
Heterobasidion_annosum_ 9 2
Gloeophyllum_trabeumv1.0 8 2
Punctularia_strigosozonata_v1.0 9 2
Sebacina_vermifera_MAFF_305830_v1.0 8 2
Fomitiporia_mediterranea_v1.0 8 2
Tulasnella_calospora_AL13/4D_v1.0 8 2
Postia_placenta_ 11 4
Wolfiporia_cocos_MD-104_SS10__v1.0 9 2
Fomitopsis_pinicolav1.0 9 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 9 2
Phanerochaete_chrysosporium_RP-78_2.1 8 2
Dichomitus_squalens 9 2
Trametes_versicolor_v1.0 8 2
Tremella_mesenterica_   (Witches' butter)   8 2
Daldinia_eschscholzii_EC12_v1.0 6 2
Apiospora_montagnei_NRRL_25634_v1.0 6 2
Magnaporthe_poae_ATCC_64411_22 6 2
Magnaporthe_grisea_70-15_ 6 2
Podospora_anserina_ 6 2
Sporotrichum_thermophile_ATCC_42464_ 6 2
Thielavia_terrestris_NRRL_8126_ 6 2
Chaetomium_globosum_CBS_148.51_ 6 2
Neurospora_tetrasperma_ 6 2
Neurospora_discreta_FGSC_8579_ 6 2
Neurospora_crassa_OR74A_ 6 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   6 2
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 6 2
Acremonium_alcalophilumv_1.0 6 2
Glomerella_graminicola_22 6 2
Fusarium_graminearum_ 6 2
Nectria_haematococca_mpVI_ 5 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6 2
Fusarium_verticillioides_7600_ 6 2
Trichoderma_asperellum_CBS_433.97_v1.0 6 2
Trichoderma_atroviride_ 6 2
Trichoderma_citrinoviride_v1.0 6 2
Trichoderma_reesei_1.2 6 2
Trichoderma_virens_Gv29-8_ 6 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 6 2
Trichoderma_harzianum_CBS_226.95_v1.0 6 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   6 2
Botrytis_cinerea_B05.10_ 5 3
Sclerotinia_sclerotiorum_ 6 2
Blumeria_graminis_22 6 2
Didymella_exigua_CBS_183.55_v1.0 6 2
Leptosphaeria_maculans_22 6 2
Setosphaeria_turcica_v1.0 6 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6 2
Cochliobolus_victoriae_FI3_v1.0 6 2
Cochliobolus_carbonum_26-R-13_v1.0 6 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   6 2
Alternaria_brassicicola_ 6 2
Cochliobolus_lunatus_m118_v2.0 6 2
Pyrenophora_teres_f._teres_22 6 2
Pyrenophora_tritici-repentis_ 6 2
Stagonospora_nodorum_ 6 2
Mycosphaerella_graminicola_IPO323_ 6 2
Zasmidium_cellare_ATCC_36951_v1.0 6 2
Dothistroma_septosporum 5 2
Septoria_musiva_v1.0 5 2
Mycosphaerella_fijiensis_CIRAD86_ 5 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 6 2
Paracoccidioides_brasiliensis_Pb18_ 6 2
Coccidioides_posadasii_RMSCC_3488_ 6 2
Coccidioides_immitis_RS_ 6 2
Ajellomyces_dermatitidis_SLH14081_ 5 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 6 2
Microsporum_canis_CBS_113480_ 6 2
Trichophyton_equinum_CBS_127.97_ 6 2
Trichophyton_verrucosum_HKI_0517_ 6 2
Arthroderma_benhamiae_CBS_112371_ 6 2
Trichophyton_tonsurans_CBS_112818_ 6 2
Trichophyton_rubrum_CBS_118892_ 6 2
Uncinocarpus_reesii_1704_ 6 2
Aspergillus_zonatus_v1.0 6 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 6 2
Penicillium_chrysogenum_v1.0 6 2
Aspergillus_acidus_v1.0 6 2
Aspergillus_fumigatus_Af293 6 2
Aspergillus_brasiliensis_v1.0 6 2
Aspergillus_nidulans_FGSC_A4_ 6 2
Aspergillus_sydowii_v1.0 6 2
Aspergillus_versicolor_v1.0 6 2
Aspergillus_glaucus 6 2
Aspergillus_carbonarius_ITEM_5010_ 6 2
Neosartorya_fischeri_NRRL_181_ 6 2
Aspergillus_terreus_NIH2624_ 6 2
Aspergillus_tubingensis_v1.0 6 2
Aspergillus_wentii_v1.0 6 2
Aspergillus_oryzae_RIB40_ 6 2
Aspergillus_niger_22 6 2
Aspergillus_niger_ATCC_1015_ 6 2
Aspergillus_flavus_NRRL3357_ 7 3
Aspergillus_clavatus_NRRL_1_ 6 2
Penicillium_marneffei_ATCC_18224_ 6 2
Tuber_melanosporum_Mel28_22 6 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   6 2
Hansenula_polymorpha_v2.0 3 1
Dekkera_bruxellensis_CBS_2499_v2.0 4 2
Pichia_membranifaciensv1.0 3 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4 2
Candida_dubliniensis_CD36_ 3 2
Candida_tropicalis_MYA-3404_ 3 2
Candida_parapsilosis_ 3 2
Candida_albicans_SC5314 3 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 2 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4 2
Pichia_stipitis_CBS_6054_ 3 2
Candida_guilliermondii_ATCC_6260_ 4 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2 1
Debaromyces_hansenii 3 2
Wickerhamomyces_anomalus 5 2
Pichia_pastoris_GS115_ 3 2
Yarrowia_lipolytica_CLIB122 5 2
Candida_lusitaniae_ATCC_42720_ 3 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 2
Vanderwaltozyma_polyspora_DSM_70294_ 4 2
Candida_glabrata_CBS138 4 2
Kluyveromyces_thermotolerans_CBS_6340 5 2
Lachancea_kluyveri_ 4 2
Kluyveromyces_waltii 4 2
Ashbya_gossypii_ATCC_10895_ 4 2
Zygosaccharomyces_rouxii_ 4 2
Saccharomyces_mikatae_MIT 4 2
Saccharomyces_paradoxus_MIT 4 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   4 2
Saccharomyces_bayanus_MIT 4 2
Kluyveromyces_lactis 4 2
Schizosaccharomyces_cryophilus_OY26_22 6 2
Schizosaccharomyces_octosporus_yFS286_ 6 2
Schizosaccharomyces_japonicus_yFS275_ 6 2
Schizosaccharomyces_pombe   (Fission yeast)   6 2
Catenaria_anguillulae_PL171_v1.0 1 1
Spizellomyces_punctatus_DAOM_BR117_ 9 2
Dictyostelium_discoideum 4 1
Dictyostelium_purpureum_ 5 1
Entamoeba_dispar_1.2 2 1
Entamoeba_histolytica_1 2 1
Selaginella_moellendorffii_ 19 4
Pinus_taeda   (Loblolly pine)   6 2
Picea_abies   (Norway spruce)   9 3
Eucalyptus_grandis_v201   (Rose gum)   30 6
Theobroma_cacao_B97-61/B2_v1   (Cacao)   15 3
Gossypium_raimondii_v221 86 18
Citrus_clementina_v165 24 5
Citrus_sinensis_v154   (Sweet orange)   39 8
Thellungiella_halophila_v173 20 4
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   15 3
Capsella_rubella_v183 15 3
Arabidopsis_lyrata_   (Lyrate rockcress)   15 3
Arabidopsis_thaliana_10   (Thale cress)   20 4
Carica_papaya_   (Papaya)   8 2
Medicago_truncatula_   (Barrel medic)   17 4
Phaseolus_vulgaris_v186   (French bean)   23 5
Glycine_max_v109   (Soybean)   44 10
Cucumis_sativus_v122   (Cucumber)   40 8
Fragaria_vesca_   (Wild strawberry)   15 3
Malus_domestica_v196   (Apple)   36 11
Prunus_persica_v139   (Peach)   14 3
Linum_usitatissimum_v200   (Flax)   29 6
Manihot_esculenta_v147   (Cassava)   18 4
Populus_trichocarpa_v156   (Black cottonwood)   22 5
Vitis_vinifera_   (Wine grape)   10 2
Mimulus_guttatus_v140   (Spotted monkey flower)   14 3
Solanum_lycopersicum_v.2.3   (Tomato)   15 3
Actinidia_chinensis_Hongyang_ 15 3
Aquilegia_coerulea_v195 44 9
Triticum_urartu_22 10 2
Triticum_aestivum_22   (Bread wheat)   29 6
Aegilops_tauschii_22 10 2
Brachypodium_distachyon_   (Stiff brome)   30 6
Oryza_barthii_22   (African wild rice)   15 3
Oryza_meridionalis_22 24 5
Oryza_glumaepatula_22 20 4
Oryza_glaberrima   (African rice)   3 1
Oryza_punctata_22 15 3
Oryza_nivara_22 25 5
Oryza_brachyantha_22   (Malo sina)   10 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   11 3
Oryza_sativa_v193   (Rice)   11 3
Panicum_virgatum_v202   (Switchgrass)   36 9
Setaria_italica_v164   (Foxtail millet)   15 3
Zea_mays_subsp._mays_   (Maize)   17 6
Zea_mays_v181   (Maize)   3 1
Sorghum_bicolor_   (Sorghum)   15 2
Musa_balbisiana   (Balbis banana)   15 3
Musa_acuminata_22   (Wild Malaysian banana)   15 3
Amborella_trichopoda_22 9 3
Physcomitrella_patens 19 5
Coccomyxa_subellipsoidea_sp._C-169_v2 9 3
Asterochloris_sp._Cgr/DA1pho_v1.0 8 2
Chlorella_variabilis_sp._NC64A_ 7 2
Chlorella_vulgaris_ 9 3
Volvox_carteri_f._nagariensis_ 7 3
Volvox_carteri_v199 7 3
Chlamydomonas_reinhardtii_4.0 3 1
Ostreococcus_sp._RCC809_ 6 2
Ostreococcus_lucimarinus_CCE9901_ 6 2
Bathycoccus_prasinos_ 2 2
Micromonas_sp._RCC299_ 3 2
Micromonas_pusilla_CCMP1545_v3.0 5 2
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 5 2
Bigelowiella_natans_CCMP2755_22 4 1
Cyanophora_paradoxa_ 1 1
Ectocarpus_siliculosus 3 1
Albugo_laibachii_22 3 2
Pythium_iwayamai_DAOM_BR242034_22 2 2
Pythium_arrhenomanes_ATCC_12531_22 3 2
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 3 2
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 2 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3 2
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 3 2
Phytophthora_capsici_ 3 2
Hyaloperonospora_arabidopsidis_22 3 2
Phaeodactylum_tricornutumCCAP_1055/1 4 1
Fragilariopsis_cylindrus 4 1
Thalassiosira_pseudonana_CCMP1335 4 1
Perkinsus_marinus_ATCC_50983_ 5 3
Paramecium_tetraurelia_ 7 2
Tetrahymena_thermophila_SB210_1_ 4 1
Ichthyophthirius_multifiliis_strain_G5_ 4 1
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 4 2
Toxoplasma_gondii_VEG 4 2
Toxoplasma_gondii_ME49 4 2
Toxoplasma_gondii_GT1 4 2
Babesia_bovis_T2Bo_ 6 4
Theileria_parva__ 2 1
Theileria_annulata 3 2
Plasmodium_falciparum_3D7_ 3 2
Plasmodium_vivax_SaI-1_7.0 3 2
Plasmodium_knowlesi_strain_H_ 3 2
Plasmodium_yoelii_ssp._yoelii_1_ 3 2
Plasmodium_chabaudi_ 3 2
Plasmodium_berghei_ANKA_ 3 2
Symbiodinium_minutum_clade_B1_v1.2 9 5
Naegleria_gruberi_ 5 1
Trichomonas_vaginalis_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 7 3
Emiliania_huxleyi_CCMP1516_ 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   27 8
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   28 10
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   14 4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   29 6
Cryptococcus_neoformans_var._grubii_H99_ 8 2
Cryptococcus_neoformans_B-3501A_ 12 4
Cryptococcus_neoformans_JEC21_ 12 4
Paracoccidioides_brasiliensis_Pb01_ 6 2
Paracoccidioides_brasiliensis_Pb03_ 6 2
Coccidioides_posadasii_str._Silveira_ 6 2
Coccidioides_immitis_RMSCC_3703_ 5 2
Coccidioides_immitis_RMSCC_2394_ 6 2
Coccidioides_immitis_H538.4_ 2 2
Ajellomyces_dermatitidis_ER-3_ 5 2
Histoplasma_capsulatum_H143 6 2
Histoplasma_capsulatum_H88 6 2
Histoplasma_capsulatum_G186AR 6 2
Aspergillus_fumigatus_A1163_ 6 2
Candida_albicans_WO-1_ 3 2
Saccharomyces_cerevisiae_UC5 4 2
Saccharomyces_cerevisiae_PW5 2 2
Saccharomyces_cerevisiae_FL100 3 1
Saccharomyces_cerevisiae_CBS7960 4 2
Saccharomyces_cerevisiae_YJM269 4 2
Saccharomyces_cerevisiae_T7 4 2
Saccharomyces_cerevisiae_FostersB 3 2
Saccharomyces_cerevisiae_FostersO 3 2
Saccharomyces_cerevisiae_VL3 4 2
Saccharomyces_cerevisiae_Vin13 3 2
Saccharomyces_cerevisiae_LalvinQA23 3 1
Saccharomyces_cerevisiae_AWRI796 3 2
Saccharomyces_cerevisiae_Sigma1278b 4 2
Saccharomyces_cerevisiae_W303 4 2
Saccharomyces_cerevisiae_JAY291 4 2
Saccharomyces_cerevisiae_AWRI1631 1 1
Saccharomyces_cerevisiae_YPS163 1 1
Saccharomyces_cerevisiae_T73 3 1
Saccharomyces_cerevisiae_CLIB215 3 2
Saccharomyces_cerevisiae_Y10 4 2
Saccharomyces_cerevisiae_YJM789_ 4 2
Saccharomyces_cerevisiae_YJM789 4 2
Saccharomyces_cerevisiae_RM11-1a 4 2
Saccharomyces_cerevisiae_RM11-1a_ 4 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4 2
Schizosaccharomyces_pombe_972h-_ 6 2
Batrachochytrium_dendrobatidis_JEL423_ 8 2
Batrachochytrium_dendrobatidis_JAM81_ 8 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   15 3
Hordeum_vulgare_22   (Domesticated barley)   16 6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8 2
Neospora_caninum_Nc-Liverpool_6.2 4 2
Plasmodium_falciparum_HB3_ 3 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   19 6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   19 6
Gorilla_gorilla_69_3.1   (Western gorilla)   19 6
Pongo_abelii_69_2   (Sumatran orangutan)   19 6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   14 5
Macaca_mulatta_69_1   (Rhesus monkey)   19 6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   18 5
Otolemur_garnettii_69_3   (Small-eared galago)   17 5
Microcebus_murinus_69_1   (Gray mouse lemur)   12 6
Rattus_norvegicus_69_3.4   (Norway rat)   14 5
Mus_musculus_69_38   (House mouse)   19 6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   17 6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   18 6
Cavia_porcellus_69_3   (Domestic guinea pig)   18 6
Oryctolagus_cuniculus_69_2   (Rabbit)   17 5
Ochotona_princeps_69   (American pika)   16 6
Tupaia_belangeri_69   (Northern tree shrew)   16 6
Sus_scrofa_69_10.2   (Pig)   18 5
Bos_taurus_69_3.1   (Cattle)   17 5
Vicugna_pacos_69_1   (Alpaca)   12 4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   17 6
Mustela_putorius_furo_69_1.0   (Domestic ferret)   19 6
Ailuropoda_melanoleuca_69_1   (Giant panda)   19 6
Canis_familiaris_69_3.1   (Dog)   18 6
Felis_catus_69   (Domestic cat)   11 6
Equus_caballus_69_2   (Horse)   19 6
Myotis_lucifugus_69_2.0   (Little brown bat)   19 6
Pteropus_vampyrus_69_1   (Large flying fox)   17 5
Sorex_araneus_69_1   (European shrew)   15 5
Erinaceus_europaeus_69   (Western European hedgehog)   8 3
Procavia_capensis_69_1   (Cape rock hyrax)   17 6
Loxodonta_africana_69_3   (African savanna elephant)   19 6
Echinops_telfairi_69   (Small Madagascar hedgehog)   15 6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   13 6
Macropus_eugenii_69_1.0   (Tammar wallaby)   13 5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   12 4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   14 5
Ornithorhynchus_anatinus_69_5   (Platypus)   17 7
Petromyzon_marinus_69_7.0   (Sea lamprey)   11 3
Meleagris_gallopavo_69_2   (Turkey)   12 4
Gallus_gallus_69_2   (Chicken)   13 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   14 5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   17 6
Anolis_carolinensis_69_2.0   (Green anole)   14 5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   18 5
Latimeria_chalumnae_69_1   (Coelacanth)   18 5
Gadus_morhua_69_1   (Atlantic cod)   12 4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   11 3
Takifugu_rubripes_69_4   (Torafugu)   12 4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   12 4
Oryzias_latipes_69_1   (Japanese medaka)   12 4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   12 4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   14 5
Danio_rerio_69_9   (Zebrafish)   20 6
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7 2
Ciona_intestinalis_69   (Vase tunicate)   8 3
Drosophila_melanogaster_69_5   (Fruit fly)   10 3
Caenorhabditis_elegans_69_215   (Roundworm)   14 3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4 2
Arabidopsis_thaliana_10   (Thale cress)   15 3

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   44 15
Homo_sapiens__(NCBI_version)   (Human)   30 9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   21 7
Heliconius_numata__(Incomplete) 3 3
Loa_loa_v3.3_(Request)   (Eye worm)   11 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   11 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   11 3
Moniliophthora_perniciosa_FA553__(Genome_survey) 7 2
Lotus_japonicus__(Early_assembly) 7 5
Malus_x_domestica_(Duplicate)   (Apple)   36 11
Ricinus_communis__(Early_assembly)   (Castor bean)   15 3
Nicotiana_benthamiana_0.4.4_(Early_draft) 26 9
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   15 3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   15 3
Phoenix_dactylifera__(Early_draft)   (Date palm)   14 5
PDB_chains_(SCOP_1.75)_(PDB) 6 6
Protein_Data_Bank_(all_PDB_sequenc) 26 18
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 53 53
Protozoadb_2010_08_(Protozoadb) 62 40
TargetDB__(Targets) 65 22
STRING_v9.0.5_(STRING) 1047 342
Uniprot_2018_03_genome 15229 4618
NCBI_2017_08_genome 18760 5108

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