SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Helical domain of Sec23/24 superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Helical domain of Sec23/24 domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   18 18
Pan_troglodytes_76_2.1.4   (Chimpanzee)   5 5
Gorilla_gorilla_76_3.1   (Western gorilla)   8 8
Pongo_abelii_76_2   (Sumatran orangutan)   6 6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   6 6
Papio_anubis_76   (Olive baboon)   6 6
Macaca_mulatta_76_1   (Rhesus monkey)   10 10
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   19 18
Otolemur_garnettii_76_3   (Small-eared galago)   6 6
Microcebus_murinus_76_1   (Gray mouse lemur)   5 5
Rattus_norvegicus_76_5.0   (Norway rat)   6 6
Mus_musculus_76_38   (House mouse)   8 8
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6 6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   5 5
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   7 7
Cavia_porcellus_76_3   (Domestic guinea pig)   6 6
Oryctolagus_cuniculus_76_2   (Rabbit)   5 5
Ochotona_princeps_76   (American pika)   5 5
Tupaia_belangeri_76   (Northern tree shrew)   5 5
Sus_scrofa_76_10.2   (Pig)   7 7
Bos_taurus_76_3.1   (Cattle)   6 6
Ovis_aries_76_3.1   (Sheep)   8 8
Vicugna_pacos_76_1   (Alpaca)   6 6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   6 6
Mustela_putorius_furo_76_1.0   (Domestic ferret)   6 6
Ailuropoda_melanoleuca_76_1   (Giant panda)   7 7
Canis_familiaris_76_3.1   (Dog)   10 10
Felis_catus_76_6.2   (Domestic cat)   6 6
Equus_caballus_76_2   (Horse)   7 7
Myotis_lucifugus_76_2.0   (Little brown bat)   5 5
Pteropus_vampyrus_76_1   (Large flying fox)   6 6
Sorex_araneus_76_1   (European shrew)   5 5
Erinaceus_europaeus_76   (Western European hedgehog)   4 4
Procavia_capensis_76_1   (Cape rock hyrax)   4 4
Loxodonta_africana_76_3   (African savanna elephant)   8 8
Echinops_telfairi_76   (Small Madagascar hedgehog)   5 5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   9 9
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   4 4
Macropus_eugenii_76_1.0   (Tammar wallaby)   7 7
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   9 9
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   6 6
Ornithorhynchus_anatinus_76_5   (Platypus)   6 6
Saccoglossus_kowalevskii_v3.0 8 8
Petromyzon_marinus_76_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_76_2   (Turkey)   7 7
Gallus_gallus_76_4   (Chicken)   7 7
Anas_platyrhynchos_76_1.0   (Mallard)   7 7
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7 7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7 7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   8 8
Anolis_carolinensis_76_2.0   (Green anole)   6 6
Xenopus_laevis_   (African clawed frog)   5 5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   6 6
Latimeria_chalumnae_76_1   (Coelacanth)   10 10
Lepisosteus_oculatus_76   (Spotted gar)   11 11
Gadus_morhua_76_1   (Atlantic cod)   7 7
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   10 10
Takifugu_rubripes_76_4   (Torafugu)   13 13
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   7 7
Oryzias_latipes_76_1   (Japanese medaka)   7 7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   7 7
Poecilia_formosa_76   (Amazon molly)   8 8
Oreochromis_niloticus_76_1.0   (Nile tilapia)   8 8
Astyanax_mexicanus_76   (Mexican tetra)   7 7
Danio_rerio_76_9   (Zebrafish)   13 13
Oikopleura_dioica 2 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   14 14
Ciona_intestinalis_76   (Vase tunicate)   4 4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   6 6
Adineta_vaga 11 11
Octopus_bimaculoides_280 5 5
Crassostrea_gigas_22   (Pacific oyster)   3 3
Lottia_gigantea_   (Owl limpet)   3 3
Helobdella_robusta_ 4 4
Capitella_sp._I_ 3 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4 4
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   4 4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   8 8
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 3
Linepithema_humile_v1.1   (Argentine ant)   3 3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 3 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 3
Lucilia_cuprina   (Australian sheep blowfly)   2 2
Drosophila_grimshawi_1.3 3 3
Drosophila_willistoni_1.3 3 3
Drosophila_pseudoobscura_2.13 4 4
Drosophila_persimilis_1.3 3 3
Drosophila_suzukii 3 3
Drosophila_yakuba_1.3 3 3
Drosophila_simulans_1.3 3 3
Drosophila_sechellia_1.3 3 3
Drosophila_melanogaster_76_5   (Fruit fly)   10 10
Drosophila_erecta_1.3 3 3
Drosophila_ananassae_1.3 3 3
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 3 3
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4 4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5 5
Anopheles_darlingi_22   (American malaria mosquito)   3 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   2 2
Tribolium_castaneum_3.0   (Red flour beetle)   3 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   4 4
Rhodnius_prolixus_22 3 3
Daphnia_pulex_   (Common water flea)   3 3
Strigamia_maritima_22 2 2
Sarcoptes_scabiei 2 2
Tetranychus_urticae_   (Two-spotted spider mite)   3 3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3 3
Pristionchus_pacificus_ 3 3
Meloidogyne_incognita_   (Southern root-knot nematode)   3 3
Meloidogyne_hapla_ 3 3
Onchocerca_volvulus_22 3 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   12 12
Caenorhabditis_japonica_ 3 3
Caenorhabditis_brenneri_ 10 10
Caenorhabditis_remanei_ 4 4
Caenorhabditis_elegans_76_235   (Roundworm)   3 3
Caenorhabditis_briggsae_2 3 3
Trichinella_spiralis_22 4 4
Hymenolepis_microstoma_ 3 3
Echinococcus_multilocularis_ 3 3
Echinococcus_granulosus_ 3 3
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 2 2
Mnemiopsis_leidyi   (Sea walnut)   2 2
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 3 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   3 3
Hydra_vulgaris 3 3
Amphimedon_queenslandica 4 4
Trichoplax_adhaerens_ 3 3
Proterospongia_sp._ATCC_50818_ 3 3
Monosiga_brevicollis_ 3 3
Sphaeroforma_arctica_JP610_ 4 4
Capsaspora_owczarzaki_ATCC_30864_ 4 4
Conidiobolus_coronatus_NRRL28638_v1.0 4 4
Mortierella_verticillata_NRRL_6337_ 5 5
Phycomyces_blakesleeanus_ 7 7
Rhizopus_oryzae_RA_99-880_ 7 7
Mucor_circinelloides_ 6 6
Rhizomucor_miehei_CAU432_ 5 5
Malassezia_globosa_CBS_7966_ 6 6
Sporisorium_reilianum_22 3 3
Ustilago_maydis_ 3 3
Mixia_osmundae_IAM_14324_v1.0 3 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3 3
Melampsora_laricis-populina_ 3 3
Rhodotorula_graminis_WP1_v1.0 3 3
Sporobolomyces_roseus_IAM_13481_ 3 3
Microbotryum_violaceum_22 3 3
Wallemia_sebi_v1.0 3 3
Sphaerobolus_stellatus_v1.0 3 3
Piloderma_croceum_F_1598_v1.0 4 4
Serpula_lacrymans_var._lacrymans_S7.9_ 3 3
Coniophora_puteana 3 3
Hydnomerulius_pinastri_v2.0 3 3
Paxillus_rubicundulus_Ve08.2h10_v1.0 3 3
Pisolithus_microcarpus_441_v1.0 17 17
Pisolithus_tinctorius_Marx_270_v1.0 3 3
Scleroderma_citrinum_Foug_A_v1.0 3 3
Coprinopsis_cinerea_okayama7_130_v3 3 3
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 3 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3 3
Galerina_marginata_v1.0 3 3
Hebeloma_cylindrosporum_h7_v2.0 3 3
Laccaria_bicolor_S238N-H82_ 3 3
Agaricus_bisporus_var._bisporus_ 3 3
Schizophyllum_commune_ 2 2
Stereum_hirsutum_FP-91666_SS1__v1.0 4 4
Heterobasidion_annosum_ 3 3
Gloeophyllum_trabeumv1.0 3 3
Punctularia_strigosozonata_v1.0 3 3
Sebacina_vermifera_MAFF_305830_v1.0 3 3
Fomitiporia_mediterranea_v1.0 3 3
Tulasnella_calospora_AL13/4D_v1.0 3 3
Postia_placenta_ 5 5
Wolfiporia_cocos_MD-104_SS10__v1.0 3 3
Fomitopsis_pinicolav1.0 5 5
Fomitopsis_pinicola_FP-58527_SS1_v3.0 4 4
Phanerochaete_chrysosporium_RP-78_2.1 3 3
Dichomitus_squalens 3 3
Trametes_versicolor_v1.0 3 3
Tremella_mesenterica_   (Witches' butter)   3 3
Daldinia_eschscholzii_EC12_v1.0 3 3
Apiospora_montagnei_NRRL_25634_v1.0 3 3
Magnaporthe_poae_ATCC_64411_22 3 3
Magnaporthe_grisea_70-15_ 3 3
Podospora_anserina_ 3 3
Sporotrichum_thermophile_ATCC_42464_ 3 3
Thielavia_terrestris_NRRL_8126_ 3 3
Chaetomium_globosum_CBS_148.51_ 3 3
Neurospora_tetrasperma_ 3 3
Neurospora_discreta_FGSC_8579_ 3 3
Neurospora_crassa_OR74A_ 3 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   3 3
Verticillium_albo-atrum_VaMs.102_ 3 3
Verticillium_dahliae_VdLs.17_ 3 3
Acremonium_alcalophilumv_1.0 3 3
Glomerella_graminicola_22 3 3
Fusarium_graminearum_ 3 3
Nectria_haematococca_mpVI_ 3 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 3 3
Trichoderma_asperellum_CBS_433.97_v1.0 3 3
Trichoderma_atroviride_ 3 3
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 3 3
Trichoderma_virens_Gv29-8_ 3 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3 3
Trichoderma_harzianum_CBS_226.95_v1.0 3 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   3 3
Botrytis_cinerea_B05.10_ 3 3
Sclerotinia_sclerotiorum_ 3 3
Blumeria_graminis_22 3 3
Didymella_exigua_CBS_183.55_v1.0 3 3
Leptosphaeria_maculans_22 3 3
Setosphaeria_turcica_v1.0 3 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3 3
Cochliobolus_victoriae_FI3_v1.0 3 3
Cochliobolus_carbonum_26-R-13_v1.0 3 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3 3
Alternaria_brassicicola_ 3 3
Cochliobolus_lunatus_m118_v2.0 3 3
Pyrenophora_teres_f._teres_22 3 3
Pyrenophora_tritici-repentis_ 3 3
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 3 3
Zasmidium_cellare_ATCC_36951_v1.0 3 3
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 3 3
Mycosphaerella_fijiensis_CIRAD86_ 3 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3 3
Paracoccidioides_brasiliensis_Pb18_ 2 2
Coccidioides_posadasii_RMSCC_3488_ 3 3
Coccidioides_immitis_RS_ 3 3
Ajellomyces_dermatitidis_SLH14081_ 3 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3 3
Microsporum_canis_CBS_113480_ 3 3
Trichophyton_equinum_CBS_127.97_ 3 3
Trichophyton_verrucosum_HKI_0517_ 3 3
Arthroderma_benhamiae_CBS_112371_ 3 3
Trichophyton_tonsurans_CBS_112818_ 3 3
Trichophyton_rubrum_CBS_118892_ 3 3
Uncinocarpus_reesii_1704_ 3 3
Aspergillus_zonatus_v1.0 3 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 3 3
Penicillium_chrysogenum_v1.0 3 3
Aspergillus_acidus_v1.0 3 3
Aspergillus_fumigatus_Af293 3 3
Aspergillus_brasiliensis_v1.0 3 3
Aspergillus_nidulans_FGSC_A4_ 3 3
Aspergillus_sydowii_v1.0 3 3
Aspergillus_versicolor_v1.0 3 3
Aspergillus_glaucus 3 3
Aspergillus_carbonarius_ITEM_5010_ 3 3
Neosartorya_fischeri_NRRL_181_ 3 3
Aspergillus_terreus_NIH2624_ 3 3
Aspergillus_tubingensis_v1.0 3 3
Aspergillus_wentii_v1.0 3 3
Aspergillus_oryzae_RIB40_ 3 3
Aspergillus_niger_22 3 3
Aspergillus_niger_ATCC_1015_ 2 2
Aspergillus_flavus_NRRL3357_ 3 3
Aspergillus_clavatus_NRRL_1_ 3 3
Penicillium_marneffei_ATCC_18224_ 3 3
Tuber_melanosporum_Mel28_22 3 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3 3
Hansenula_polymorpha_v2.0 4 4
Dekkera_bruxellensis_CBS_2499_v2.0 4 4
Pichia_membranifaciensv1.0 4 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5 5
Candida_dubliniensis_CD36_ 5 5
Candida_tropicalis_MYA-3404_ 5 5
Candida_parapsilosis_ 4 4
Candida_albicans_SC5314 5 5
Lodderomyces_elongisporus_NRRL_YB-4239_ 4 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 5 5
Pichia_stipitis_CBS_6054_ 5 5
Candida_guilliermondii_ATCC_6260_ 5 5
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5 5
Debaromyces_hansenii 4 4
Wickerhamomyces_anomalus 5 5
Pichia_pastoris_GS115_ 4 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3 3
Yarrowia_lipolytica_CLIB122 4 4
Candida_lusitaniae_ATCC_42720_ 5 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5 5
Vanderwaltozyma_polyspora_DSM_70294_ 6 6
Candida_glabrata_CBS138 5 5
Kluyveromyces_thermotolerans_CBS_6340 3 3
Lachancea_kluyveri_ 4 4
Kluyveromyces_waltii 3 3
Ashbya_gossypii_ATCC_10895_ 3 3
Zygosaccharomyces_rouxii_ 3 3
Saccharomyces_mikatae_MIT 4 4
Saccharomyces_paradoxus_MIT 4 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4 4
Saccharomyces_bayanus_MIT 4 4
Kluyveromyces_lactis 3 3
Schizosaccharomyces_cryophilus_OY26_22 5 5
Schizosaccharomyces_octosporus_yFS286_ 5 5
Schizosaccharomyces_japonicus_yFS275_ 6 6
Schizosaccharomyces_pombe   (Fission yeast)   4 4
Catenaria_anguillulae_PL171_v1.0 4 4
Allomyces_macrogynus_ATCC_38327_ 6 6
Spizellomyces_punctatus_DAOM_BR117_ 3 3
Dictyostelium_discoideum 4 4
Dictyostelium_purpureum_ 3 3
Entamoeba_dispar_1.2 4 4
Entamoeba_invadens_1.2 3 3
Entamoeba_histolytica_1 4 4
Selaginella_moellendorffii_ 14 14
Pinus_taeda   (Loblolly pine)   7 6
Picea_abies   (Norway spruce)   3 3
Eucalyptus_grandis_v201   (Rose gum)   8 8
Theobroma_cacao_B97-61/B2_v1   (Cacao)   8 8
Gossypium_raimondii_v221 50 50
Citrus_clementina_v165 14 14
Citrus_sinensis_v154   (Sweet orange)   20 20
Thellungiella_halophila_v173 10 10
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   15 15
Capsella_rubella_v183 13 13
Arabidopsis_lyrata_   (Lyrate rockcress)   11 11
Arabidopsis_thaliana_10   (Thale cress)   15 15
Carica_papaya_   (Papaya)   8 8
Medicago_truncatula_   (Barrel medic)   13 13
Phaseolus_vulgaris_v186   (French bean)   11 11
Glycine_max_v109   (Soybean)   17 17
Cucumis_sativus_v122   (Cucumber)   13 13
Fragaria_vesca_   (Wild strawberry)   8 8
Malus_domestica_v196   (Apple)   22 22
Prunus_persica_v139   (Peach)   9 9
Linum_usitatissimum_v200   (Flax)   13 13
Manihot_esculenta_v147   (Cassava)   12 12
Populus_trichocarpa_v156   (Black cottonwood)   15 15
Vitis_vinifera_   (Wine grape)   7 7
Mimulus_guttatus_v140   (Spotted monkey flower)   9 9
Solanum_lycopersicum_v.2.3   (Tomato)   9 9
Solanum_tuberosum_   (Potato)   9 9
Actinidia_chinensis_Hongyang_ 11 11
Aquilegia_coerulea_v195 12 12
Triticum_urartu_22 8 8
Triticum_aestivum_22   (Bread wheat)   29 29
Aegilops_tauschii_22 10 9
Brachypodium_distachyon_   (Stiff brome)   10 10
Oryza_barthii_22   (African wild rice)   12 12
Oryza_meridionalis_22 10 10
Oryza_glumaepatula_22 17 17
Oryza_glaberrima   (African rice)   8 8
Oryza_punctata_22 14 14
Oryza_nivara_22 18 18
Oryza_brachyantha_22   (Malo sina)   8 8
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   13 13
Oryza_sativa_v193   (Rice)   13 13
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   12 12
Panicum_virgatum_v202   (Switchgrass)   20 20
Setaria_italica_v164   (Foxtail millet)   14 14
Zea_mays_subsp._mays_   (Maize)   20 20
Zea_mays_v181   (Maize)   19 19
Sorghum_bicolor_   (Sorghum)   9 9
Musa_balbisiana   (Balbis banana)   12 12
Musa_acuminata_22   (Wild Malaysian banana)   14 14
Amborella_trichopoda_22 7 7
Physcomitrella_patens 14 14
Coccomyxa_subellipsoidea_sp._C-169_v2 5 5
Asterochloris_sp._Cgr/DA1pho_v1.0 5 5
Chlorella_variabilis_sp._NC64A_ 2 2
Chlorella_vulgaris_ 5 5
Volvox_carteri_f._nagariensis_ 4 4
Volvox_carteri_v199 4 4
Chlamydomonas_reinhardtii_4.0 4 4
Ostreococcus_sp._RCC809_ 5 5
Ostreococcus_lucimarinus_CCE9901_ 5 5
Ostreococcus_tauri_ 5 5
Bathycoccus_prasinos_ 4 4
Micromonas_sp._RCC299_ 7 7
Micromonas_pusilla_CCMP1545_v3.0 5 5
Cyanidioschyzon_merolae_strain_10D_22 3 3
Cyanidioschyzon_merolae 3 3
Porphyridium_purpureum_02_2012 4 4
Thecamonas_trahens_ATCC_50062_ 2 2
Bigelowiella_natans_CCMP2755_22 4 4
Giardia_lamblia_2.3 3 3
Cyanophora_paradoxa_ 3 3
Leishmania_mexicana_2.4 4 4
Leishmania_major_strain_Friedlin_ 4 4
Leishmania_infantum_JPCM5_2.4 4 4
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 4 4
Trypanosoma_vivax_ 4 4
Trypanosoma_cruzi_strain_CL_Brener 3 3
Trypanosoma_congolense_2.4 5 5
Trypanosoma_brucei_gambiense_v4.1 4 4
Trypanosoma_brucei_TREU927_v4.1 4 4
Ectocarpus_siliculosus 3 3
Aureococcus_anophagefferens_ 2 2
Albugo_laibachii_22 3 3
Pythium_iwayamai_DAOM_BR242034_22 3 3
Pythium_arrhenomanes_ATCC_12531_22 3 3
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 3 3
Pythium_irregulare_DAOM_BR486_22 3 3
Pythium_vexans_DAOM_BR484_22 3 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3 3
Phytophthora_sojae_1.1 3 3
Phytophthora_infestans_T30-4_ 3 3
Phytophthora_capsici_ 3 3
Hyaloperonospora_arabidopsidis_22 2 2
Phaeodactylum_tricornutumCCAP_1055/1 3 3
Fragilariopsis_cylindrus 5 5
Thalassiosira_pseudonana_CCMP1335 3 3
Perkinsus_marinus_ATCC_50983_ 7 7
Paramecium_tetraurelia_ 4 4
Tetrahymena_thermophila_SB210_1_ 3 3
Ichthyophthirius_multifiliis_strain_G5_ 2 2
Cryptosporidium_hominis 3 3
Cryptosporidium_muris 3 3
Cryptosporidium_parvum_Iowa_II 3 3
Neospora_caninum 3 3
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 2 2
Babesia_bovis_T2Bo_ 6 6
Theileria_parva__ 2 2
Theileria_annulata 3 3
Plasmodium_falciparum_3D7_ 3 3
Plasmodium_vivax_SaI-1_7.0 3 3
Plasmodium_knowlesi_strain_H_ 3 3
Plasmodium_yoelii_ssp._yoelii_1_ 3 3
Plasmodium_chabaudi_ 3 3
Plasmodium_berghei_ANKA_ 3 3
Symbiodinium_minutum_clade_B1_v1.2 6 6
Naegleria_gruberi_ 3 3
Trichomonas_vaginalis_ 4 4
Guillardia_theta_CCMP2712_v1.0_ 3 3
Emiliania_huxleyi_CCMP1516_ 6 6

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   9 9
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4 4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2 2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3 3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3 3
Cryptococcus_neoformans_var._grubii_H99_ 3 3
Cryptococcus_neoformans_B-3501A_ 3 3
Cryptococcus_neoformans_JEC21_ 4 4
Paracoccidioides_brasiliensis_Pb01_ 3 3
Paracoccidioides_brasiliensis_Pb03_ 3 3
Coccidioides_posadasii_str._Silveira_ 3 3
Coccidioides_immitis_RMSCC_3703_ 5 5
Coccidioides_immitis_RMSCC_2394_ 3 3
Coccidioides_immitis_H538.4_ 3 3
Ajellomyces_dermatitidis_ER-3_ 3 3
Histoplasma_capsulatum_H143 3 3
Histoplasma_capsulatum_H88 3 3
Histoplasma_capsulatum_G186AR 3 3
Aspergillus_fumigatus_A1163_ 3 3
Candida_albicans_WO-1_ 5 5
Saccharomyces_cerevisiae_UC5 3 3
Saccharomyces_cerevisiae_PW5 2 2
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CLIB324 2 2
Saccharomyces_cerevisiae_CBS7960 3 3
Saccharomyces_cerevisiae_YJM269 3 3
Saccharomyces_cerevisiae_T7 4 4
Saccharomyces_cerevisiae_FostersB 3 3
Saccharomyces_cerevisiae_FostersO 3 3
Saccharomyces_cerevisiae_VL3 2 2
Saccharomyces_cerevisiae_Vin13 4 4
Saccharomyces_cerevisiae_LalvinQA23 3 3
Saccharomyces_cerevisiae_AWRI796 3 3
Saccharomyces_cerevisiae_Sigma1278b 4 4
Saccharomyces_cerevisiae_W303 4 4
Saccharomyces_cerevisiae_JAY291 4 4
Saccharomyces_cerevisiae_AWRI1631 2 2
Saccharomyces_cerevisiae_CLIB215 2 2
Saccharomyces_cerevisiae_Y10 2 2
Saccharomyces_cerevisiae_YJM789_ 4 4
Saccharomyces_cerevisiae_YJM789 4 4
Saccharomyces_cerevisiae_RM11-1a 4 4
Saccharomyces_cerevisiae_RM11-1a_ 4 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4 4
Schizosaccharomyces_pombe_972h-_ 4 4
Batrachochytrium_dendrobatidis_JEL423_ 3 3
Batrachochytrium_dendrobatidis_JAM81_ 3 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8 8
Hordeum_vulgare_22   (Domesticated barley)   18 18
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   9 9
Trypanosoma_brucei_Lister_427_v4.1 4 4
Neospora_caninum_Nc-Liverpool_6.2 3 3
Plasmodium_falciparum_HB3_ 3 3
Plasmodium_falciparum_Dd2_ 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   6 6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   5 5
Gorilla_gorilla_69_3.1   (Western gorilla)   6 6
Pongo_abelii_69_2   (Sumatran orangutan)   6 6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   6 6
Macaca_mulatta_69_1   (Rhesus monkey)   6 6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   6 6
Otolemur_garnettii_69_3   (Small-eared galago)   6 6
Microcebus_murinus_69_1   (Gray mouse lemur)   5 5
Rattus_norvegicus_69_3.4   (Norway rat)   7 7
Mus_musculus_69_38   (House mouse)   6 6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6 6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   5 5
Cavia_porcellus_69_3   (Domestic guinea pig)   6 6
Oryctolagus_cuniculus_69_2   (Rabbit)   5 5
Ochotona_princeps_69   (American pika)   5 5
Tupaia_belangeri_69   (Northern tree shrew)   5 5
Sus_scrofa_69_10.2   (Pig)   7 7
Bos_taurus_69_3.1   (Cattle)   6 6
Vicugna_pacos_69_1   (Alpaca)   6 6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   6 6
Mustela_putorius_furo_69_1.0   (Domestic ferret)   6 6
Ailuropoda_melanoleuca_69_1   (Giant panda)   6 6
Canis_familiaris_69_3.1   (Dog)   7 7
Felis_catus_69   (Domestic cat)   6 6
Equus_caballus_69_2   (Horse)   6 6
Myotis_lucifugus_69_2.0   (Little brown bat)   5 5
Pteropus_vampyrus_69_1   (Large flying fox)   6 6
Sorex_araneus_69_1   (European shrew)   5 5
Erinaceus_europaeus_69   (Western European hedgehog)   4 4
Procavia_capensis_69_1   (Cape rock hyrax)   4 4
Loxodonta_africana_69_3   (African savanna elephant)   6 6
Echinops_telfairi_69   (Small Madagascar hedgehog)   5 5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5 5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   4 4
Macropus_eugenii_69_1.0   (Tammar wallaby)   7 7
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   6 6
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   6 6
Ornithorhynchus_anatinus_69_5   (Platypus)   6 6
Petromyzon_marinus_69_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_69_2   (Turkey)   6 6
Gallus_gallus_69_2   (Chicken)   6 6
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7 7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6 6
Anolis_carolinensis_69_2.0   (Green anole)   6 6
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6 6
Latimeria_chalumnae_69_1   (Coelacanth)   8 8
Gadus_morhua_69_1   (Atlantic cod)   7 7
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   7 7
Takifugu_rubripes_69_4   (Torafugu)   7 7
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7 7
Oryzias_latipes_69_1   (Japanese medaka)   7 7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   7 7
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7 7
Danio_rerio_69_9   (Zebrafish)   7 7
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4 4
Ciona_intestinalis_69   (Vase tunicate)   3 3
Drosophila_melanogaster_69_5   (Fruit fly)   3 3
Caenorhabditis_elegans_69_215   (Roundworm)   3 3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4 4
Arabidopsis_thaliana_10   (Thale cress)   10 10

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   25 24
Homo_sapiens__(NCBI_version)   (Human)   12 12
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   6 6
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   4 4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3 3
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Encephalitozoon_intestinalis__(endoparasite) 3 3
Encephalitozoon_cuniculi_(endoparasite) 3 3
Lotus_japonicus__(Early_assembly) 6 6
Malus_x_domestica_(Duplicate)   (Apple)   22 22
Ricinus_communis__(Early_assembly)   (Castor bean)   8 8
Nicotiana_benthamiana_0.4.4_(Early_draft) 13 12
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   9 9
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   9 9
Phoenix_dactylifera__(Early_draft)   (Date palm)   8 8
PDB_chains_(SCOP_1.75)_(PDB) 4 4
NCBI_2017_08_genome 6096 6084
Uniprot_2018_03_genome 7303 7259
Core_Eukaryotic_Genes_458_(CEGMA) 6 6
TargetDB__(Targets) 10 10
Protein_Data_Bank_(all_PDB_sequenc) 67 67
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 70 70
Protozoadb_2010_08_(Protozoadb) 116 116
STRING_v9.0.5_(STRING) 535 535

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]