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Domain combinations for Family 10 polysaccharide lyase superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Family 10 polysaccharide lyase domain in that genome.

Complete genomes
Genome     Number   Proteins
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1 1
Ochotona_princeps_76   (American pika)   1 1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1 1
Equus_caballus_76_2   (Horse)   1 1
Myotis_lucifugus_76_2.0   (Little brown bat)   1 1
Sorex_araneus_76_1   (European shrew)   1 1
Procavia_capensis_76_1   (Cape rock hyrax)   1 1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1 1
Ornithorhynchus_anatinus_76_5   (Platypus)   1 1
Saccoglossus_kowalevskii_v3.0 4 4
Petromyzon_marinus_76_7.0   (Sea lamprey)   1 1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1 1
Latimeria_chalumnae_76_1   (Coelacanth)   1 1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_76_4   (Torafugu)   1 1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1 1
Crassostrea_gigas_22   (Pacific oyster)   1 1
Lottia_gigantea_   (Owl limpet)   1 1
Capitella_sp._I_ 3 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Daphnia_pulex_   (Common water flea)   1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Pristionchus_pacificus_ 1 1
Meloidogyne_incognita_   (Southern root-knot nematode)   2 2
Caenorhabditis_elegans_76_235   (Roundworm)   1 1
Caenorhabditis_briggsae_2 1 1
Hydra_vulgaris 1 1
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Aspergillus_fumigatus_Af293 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Pinus_taeda   (Loblolly pine)   1 1
Gossypium_raimondii_v221 5 5
Citrus_clementina_v165 3 3
Citrus_sinensis_v154   (Sweet orange)   2 2
Phaseolus_vulgaris_v186   (French bean)   1 1
Malus_domestica_v196   (Apple)   1 1
Prunus_persica_v139   (Peach)   1 1
Vitis_vinifera_   (Wine grape)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Triticum_aestivum_22   (Bread wheat)   3 3
Panicum_virgatum_v202   (Switchgrass)   1 1
Phytophthora_sojae_1.1 1 1
Guillardia_theta_CCMP2712_v1.0_ 1 1
Halothece_sp._PCC_7418 1 1
Rubrobacter_xylanophilus_DSM_9941 1 1
Thermomonospora_curvata_DSM_43183 1 1
Kribbella_flavida_DSM_17836 1 1
Salinispora_tropica_CNB-440 1 1
Clostridium_cellulolyticum_H10 1 1
Ruminococcus_albus_7 1 1
Clostridium_lentocellum_DSM_5427 1 1
Clostridium_sp._BNL1100 1 1
Clostridium_cellulovorans_743B 2 2
Paenibacillus_mucilaginosus_3016 1 1
Paenibacillus_polymyxa_M1 1 1
Bacillus_thuringiensis_str._Al_Hakam 1 1
Bacillus_cereus_03BB102 1 1
Bacillus_anthracis_str._A0248 1 1
Bacillus_clausii_KSM-K16 1 1
Gemmatimonas_aurantiaca_T-27 1 1
Melioribacter_roseus_P3M 2 2
Haliscomenobacter_hydrossis_DSM_1100 1 1
Niastella_koreensis_GR20-10 2 2
Chitinophaga_pinensis_DSM_2588 1 1
Cyclobacterium_marinum_DSM_745 2 2
Leadbetterella_byssophila_DSM_17132 1 1
Prevotella_ruminicola_23 1 1
Bacteroides_salanitronis_DSM_18170 3 3
Bacteroides_vulgatus_ATCC_8482 2 2
Bacteroides_thetaiotaomicron_VPI-5482 1 1
Pedobacter_heparinus_DSM_2366 1 1
Sphingobacterium_sp._21 1 1
Flavobacteriaceae_bacterium_3519-10 1 1
Flavobacterium_branchiophilum_FL-15 1 1
Flavobacterium_johnsoniae_UW101 2 2
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Planctomyces_brasiliensis_DSM_5305 2 2
Planctomyces_limnophilus_DSM_3776 1 1
Rhodopirellula_baltica_SH_1 4 4
Pirellula_staleyi_DSM_6068 2 2
Opitutus_terrae_PB90-1 1 1
Dictyoglomus_turgidum_DSM_6724 1 1
Candidatus_Solibacter_usitatus_Ellin6076 4 4
Granulicella_tundricola_MP5ACTX9 1 1
Granulicella_mallensis_MP5ACTX8 2 2
Geobacter_sp._M21 1 1
Geobacter_bemidjiensis_Bem 1 1
Pelobacter_carbinolicus_DSM_2380 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 1 1
Variovorax_paradoxus_S110 1 1
Asticcacaulis_excentricus_CB_48 4 4
Brevundimonas_subvibrioides_ATCC_15264 3 3
Caulobacter_sp._K31 1 1
Caulobacter_crescentus_NA1000 1 1
Phenylobacterium_zucineum_HLK1 1 1
Hirschia_baltica_ATCC_49814 1 1
Magnetospirillum_magneticum_AMB-1 1 1
Mesorhizobium_opportunistum_WSM2075 1 1
Saccharophagus_degradans_2-40 2 2
Teredinibacter_turnerae_T7901 1 1
Cellvibrio_japonicus_Ueda107 3 3
Marinomonas_mediterranea_MMB-1 1 1
Pseudoxanthomonas_suwonensis_11-1 1 1
Xanthomonas_campestris_pv._campestris_str._B100 2 2
Dickeya_zeae_Ech1591 1 1
Methanocella_paludicola_SANAE 1 1
Methanosarcina_mazei_Go1 2 2
Methanopyrus_kandleri_AV19 2 2
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_barophilus_MP 1 1

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Strains
Genome     Number   Proteins
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1 1
Aspergillus_fumigatus_A1163_ 1 1
Cyanothece_sp._ATCC_51142 1 1
Amycolatopsis_orientalis_HCCB10007 1 1
Thermacetogenium_phaeum_DSM_12270 1 1
Paenibacillus_mucilaginosus_KNP414 1 1
Paenibacillus_mucilaginosus_K02 1 1
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_SC2 1 1
Paenibacillus_polymyxa_E681 1 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1 1
Bacillus_cereus_biovar_anthracis_str._CI 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_Q1 1 1
Bacillus_cereus_F837/76 1 1
Bacillus_cereus_E33L 1 1
Bacillus_anthracis_str._H9401 1 1
Bacillus_anthracis_str._CDC_684 1 1
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._Sterne 1 1
Bacillus_anthracis_str._Ames 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Bacteroides_xylanisolvens_XB1A 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Singulisphaera_acidiphila_DSM_18658 1 1
Sorangium_cellulosum_So0157-2 2 2
Myxococcus_stipitatus_DSM_14675 1 1
Variovorax_paradoxus_EPS 1 1
Caulobacter_crescentus_CB15 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Methanolobus_psychrophilus_R15 1 1
Methanosarcina_mazei_Tuc01 1 1
Methanobacterium_sp._SWAN-1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Ochotona_princeps_69   (American pika)   1 1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1 1
Equus_caballus_69_2   (Horse)   1 1
Myotis_lucifugus_69_2.0   (Little brown bat)   1 1
Sorex_araneus_69_1   (European shrew)   1 1
Procavia_capensis_69_1   (Cape rock hyrax)   1 1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1 1
Ornithorhynchus_anatinus_69_5   (Platypus)   1 1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1 1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1 1
Latimeria_chalumnae_69_1   (Coelacanth)   1 1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_69_4   (Torafugu)   1 1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1 1
Caenorhabditis_elegans_69_215   (Roundworm)   1 1

Others
Genome     Number   Proteins
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   1 1
Ricinus_communis__(Early_assembly)   (Castor bean)   2 2
Nicotiana_benthamiana_0.4.4_(Early_draft) 2 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
NCBI_plasmid_sequences_(Plasmids) 1 1
PDB_chains_(SCOP_1.75)_(PDB) 3 3
STRING_v9.0.5_(STRING) 75 75
Uniprot_2018_03_genome 1932 1929
NCBI_2017_08_genome 2045 2042
TargetDB__(Targets) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 5 5
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 15 15

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