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Domain combinations for beta-sandwich domain of Sec23/24 superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a beta-sandwich domain of Sec23/24 domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   47 45
Pan_troglodytes_76_2.1.4   (Chimpanzee)   11 10
Gorilla_gorilla_76_3.1   (Western gorilla)   14 12
Pongo_abelii_76_2   (Sumatran orangutan)   17 15
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14 11
Papio_anubis_76   (Olive baboon)   11 10
Macaca_mulatta_76_1   (Rhesus monkey)   26 25
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   33 32
Otolemur_garnettii_76_3   (Small-eared galago)   10 8
Microcebus_murinus_76_1   (Gray mouse lemur)   9 9
Rattus_norvegicus_76_5.0   (Norway rat)   13 13
Mus_musculus_76_38   (House mouse)   35 34
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8 7
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   11 10
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   11 10
Cavia_porcellus_76_3   (Domestic guinea pig)   9 8
Oryctolagus_cuniculus_76_2   (Rabbit)   9 8
Ochotona_princeps_76   (American pika)   8 7
Tupaia_belangeri_76   (Northern tree shrew)   11 8
Sus_scrofa_76_10.2   (Pig)   14 12
Bos_taurus_76_3.1   (Cattle)   12 10
Ovis_aries_76_3.1   (Sheep)   13 12
Vicugna_pacos_76_1   (Alpaca)   9 8
Tursiops_truncatus_76_1   (Bottlenose dolphin)   12 10
Mustela_putorius_furo_76_1.0   (Domestic ferret)   9 8
Ailuropoda_melanoleuca_76_1   (Giant panda)   12 10
Canis_familiaris_76_3.1   (Dog)   16 15
Felis_catus_76_6.2   (Domestic cat)   10 8
Equus_caballus_76_2   (Horse)   12 9
Myotis_lucifugus_76_2.0   (Little brown bat)   10 9
Pteropus_vampyrus_76_1   (Large flying fox)   11 11
Sorex_araneus_76_1   (European shrew)   12 11
Erinaceus_europaeus_76   (Western European hedgehog)   10 9
Procavia_capensis_76_1   (Cape rock hyrax)   9 9
Loxodonta_africana_76_3   (African savanna elephant)   13 11
Echinops_telfairi_76   (Small Madagascar hedgehog)   13 11
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   15 14
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   7 6
Macropus_eugenii_76_1.0   (Tammar wallaby)   11 11
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   18 16
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   23 21
Ornithorhynchus_anatinus_76_5   (Platypus)   16 13
Saccoglossus_kowalevskii_v3.0 13 13
Petromyzon_marinus_76_7.0   (Sea lamprey)   6 6
Meleagris_gallopavo_76_2   (Turkey)   10 9
Gallus_gallus_76_4   (Chicken)   10 9
Anas_platyrhynchos_76_1.0   (Mallard)   10 8
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8 7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   28 27
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   11 10
Anolis_carolinensis_76_2.0   (Green anole)   13 11
Xenopus_laevis_   (African clawed frog)   9 7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   10 8
Latimeria_chalumnae_76_1   (Coelacanth)   17 15
Lepisosteus_oculatus_76   (Spotted gar)   16 14
Gadus_morhua_76_1   (Atlantic cod)   8 8
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   11 10
Takifugu_rubripes_76_4   (Torafugu)   21 18
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   9 8
Oryzias_latipes_76_1   (Japanese medaka)   8 7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   8 7
Poecilia_formosa_76   (Amazon molly)   10 9
Oreochromis_niloticus_76_1.0   (Nile tilapia)   12 11
Astyanax_mexicanus_76   (Mexican tetra)   14 12
Danio_rerio_76_9   (Zebrafish)   20 19
Oikopleura_dioica 4 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   13 13
Ciona_intestinalis_76   (Vase tunicate)   4 4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   13 13
Adineta_vaga 17 16
Octopus_bimaculoides_280 28 28
Crassostrea_gigas_22   (Pacific oyster)   3 3
Lottia_gigantea_   (Owl limpet)   8 8
Helobdella_robusta_ 42 42
Capitella_sp._I_ 4 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4 4
Heliconius_melpomene_   (Postman butterfly)   3 3
Bombyx_mori_   (Domestic silkworm)   6 6
Nasonia_vitripennis_   (Jewel wasp)   8 8
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   8 8
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   17 17
Linepithema_humile_v1.1   (Argentine ant)   8 7
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   11 11
Solenopsis_invicta_v.2.2.3   (Red fire ant)   9 9
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   11 11
Atta_cephalotes_v1.1 11 11
Camponotus_floridanus_v3.3   (Florida carpenter ant)   7 7
Lucilia_cuprina   (Australian sheep blowfly)   17 17
Drosophila_grimshawi_1.3 56 56
Drosophila_willistoni_1.3 43 43
Drosophila_pseudoobscura_2.13 36 35
Drosophila_persimilis_1.3 29 29
Drosophila_suzukii 27 25
Drosophila_yakuba_1.3 26 25
Drosophila_simulans_1.3 21 21
Drosophila_sechellia_1.3 26 26
Drosophila_melanogaster_76_5   (Fruit fly)   100 98
Drosophila_erecta_1.3 27 27
Drosophila_ananassae_1.3 22 22
Drosophila_virilis_1.2 50 49
Drosophila_mojavensis_1.3 70 70
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   8 8
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   19 19
Anopheles_darlingi_22   (American malaria mosquito)   29 29
Anopheles_gambiae_49_3j   (African malaria mosquito)   5 5
Tribolium_castaneum_3.0   (Red flour beetle)   4 4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5 5
Acyrthosiphon_pisum_   (Pea aphid)   6 6
Rhodnius_prolixus_22 6 6
Daphnia_pulex_   (Common water flea)   18 18
Strigamia_maritima_22 6 6
Sarcoptes_scabiei 3 3
Tetranychus_urticae_   (Two-spotted spider mite)   11 11
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4 4
Pristionchus_pacificus_ 10 10
Meloidogyne_incognita_   (Southern root-knot nematode)   10 10
Meloidogyne_hapla_ 5 5
Onchocerca_volvulus_22 6 6
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   24 24
Caenorhabditis_japonica_ 7 7
Caenorhabditis_brenneri_ 14 14
Caenorhabditis_remanei_ 7 7
Caenorhabditis_elegans_76_235   (Roundworm)   4 4
Caenorhabditis_briggsae_2 6 6
Trichinella_spiralis_22 16 16
Hymenolepis_microstoma_ 4 4
Echinococcus_multilocularis_ 3 3
Echinococcus_granulosus_ 4 4
Taenia_solium_   (Pork tapeworm)   4 4
Schistosoma_mansoni_ 4 4
Mnemiopsis_leidyi   (Sea walnut)   4 4
Thelohanellus_kitauei 3 3
Acropora_digitifera_v1.0 5 4
Nematostella_vectensis_1.0   (Starlet sea anemone)   4 4
Hydra_vulgaris 4 4
Amphimedon_queenslandica 6 6
Trichoplax_adhaerens_ 4 4
Proterospongia_sp._ATCC_50818_ 126 125
Monosiga_brevicollis_ 12 12
Sphaeroforma_arctica_JP610_ 10 10
Capsaspora_owczarzaki_ATCC_30864_ 39 39
Conidiobolus_coronatus_NRRL28638_v1.0 4 4
Mortierella_verticillata_NRRL_6337_ 20 20
Phycomyces_blakesleeanus_ 22 22
Rhizopus_oryzae_RA_99-880_ 11 11
Mucor_circinelloides_ 15 15
Rhizomucor_miehei_CAU432_ 9 9
Malassezia_globosa_CBS_7966_ 12 12
Sporisorium_reilianum_22 5 5
Ustilago_maydis_ 4 4
Mixia_osmundae_IAM_14324_v1.0 4 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 5 5
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 5 5
Melampsora_laricis-populina_ 4 4
Rhodotorula_graminis_WP1_v1.0 3 3
Sporobolomyces_roseus_IAM_13481_ 3 3
Microbotryum_violaceum_22 5 5
Wallemia_sebi_v1.0 4 4
Sphaerobolus_stellatus_v1.0 4 4
Piloderma_croceum_F_1598_v1.0 6 6
Serpula_lacrymans_var._lacrymans_S7.9_ 4 4
Coniophora_puteana 7 7
Hydnomerulius_pinastri_v2.0 3 3
Paxillus_rubicundulus_Ve08.2h10_v1.0 3 3
Pisolithus_microcarpus_441_v1.0 17 17
Pisolithus_tinctorius_Marx_270_v1.0 5 5
Scleroderma_citrinum_Foug_A_v1.0 5 5
Coprinopsis_cinerea_okayama7_130_v3 5 5
Pleurotus_ostreatus_   (Oyster mushroom)   4 4
Amanita_thiersii_Skay4041_v1.0 4 4
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3 3
Galerina_marginata_v1.0 5 5
Hebeloma_cylindrosporum_h7_v2.0 5 5
Laccaria_bicolor_S238N-H82_ 5 5
Agaricus_bisporus_var._bisporus_ 7 7
Schizophyllum_commune_ 4 4
Stereum_hirsutum_FP-91666_SS1__v1.0 4 4
Heterobasidion_annosum_ 3 3
Gloeophyllum_trabeumv1.0 4 4
Punctularia_strigosozonata_v1.0 6 5
Sebacina_vermifera_MAFF_305830_v1.0 5 4
Fomitiporia_mediterranea_v1.0 4 4
Tulasnella_calospora_AL13/4D_v1.0 4 4
Postia_placenta_ 5 5
Wolfiporia_cocos_MD-104_SS10__v1.0 4 4
Fomitopsis_pinicolav1.0 7 7
Fomitopsis_pinicola_FP-58527_SS1_v3.0 5 5
Phanerochaete_chrysosporium_RP-78_2.1 4 4
Dichomitus_squalens 3 3
Trametes_versicolor_v1.0 3 3
Tremella_mesenterica_   (Witches' butter)   3 3
Daldinia_eschscholzii_EC12_v1.0 9 9
Apiospora_montagnei_NRRL_25634_v1.0 9 9
Magnaporthe_poae_ATCC_64411_22 6 6
Magnaporthe_grisea_70-15_ 5 5
Podospora_anserina_ 9 9
Sporotrichum_thermophile_ATCC_42464_ 8 8
Thielavia_terrestris_NRRL_8126_ 8 8
Chaetomium_globosum_CBS_148.51_ 8 8
Neurospora_tetrasperma_ 9 9
Neurospora_discreta_FGSC_8579_ 5 5
Neurospora_crassa_OR74A_ 8 8
Cryphonectria_parasitica_   (Chestnut blight fungus)   9 9
Verticillium_albo-atrum_VaMs.102_ 8 8
Verticillium_dahliae_VdLs.17_ 7 7
Acremonium_alcalophilumv_1.0 4 4
Glomerella_graminicola_22 6 6
Fusarium_graminearum_ 8 8
Nectria_haematococca_mpVI_ 5 5
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4 4
Fusarium_verticillioides_7600_ 6 6
Trichoderma_asperellum_CBS_433.97_v1.0 8 8
Trichoderma_atroviride_ 4 4
Trichoderma_citrinoviride_v1.0 6 6
Trichoderma_reesei_1.2 8 8
Trichoderma_virens_Gv29-8_ 6 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4 4
Trichoderma_harzianum_CBS_226.95_v1.0 5 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   3 3
Botrytis_cinerea_B05.10_ 7 7
Sclerotinia_sclerotiorum_ 5 5
Blumeria_graminis_22 3 3
Didymella_exigua_CBS_183.55_v1.0 5 5
Leptosphaeria_maculans_22 8 8
Setosphaeria_turcica_v1.0 5 5
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6 6
Cochliobolus_victoriae_FI3_v1.0 4 4
Cochliobolus_carbonum_26-R-13_v1.0 4 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5 5
Alternaria_brassicicola_ 4 4
Cochliobolus_lunatus_m118_v2.0 5 5
Pyrenophora_teres_f._teres_22 5 5
Pyrenophora_tritici-repentis_ 5 5
Stagonospora_nodorum_ 6 6
Mycosphaerella_graminicola_IPO323_ 4 4
Zasmidium_cellare_ATCC_36951_v1.0 5 5
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 5 5
Mycosphaerella_fijiensis_CIRAD86_ 4 4
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 5 5
Paracoccidioides_brasiliensis_Pb18_ 4 4
Coccidioides_posadasii_RMSCC_3488_ 3 3
Coccidioides_immitis_RS_ 3 3
Ajellomyces_dermatitidis_SLH14081_ 6 6
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 8 8
Microsporum_canis_CBS_113480_ 4 4
Trichophyton_equinum_CBS_127.97_ 7 7
Trichophyton_verrucosum_HKI_0517_ 7 7
Arthroderma_benhamiae_CBS_112371_ 13 13
Trichophyton_tonsurans_CBS_112818_ 8 8
Trichophyton_rubrum_CBS_118892_ 6 6
Uncinocarpus_reesii_1704_ 5 5
Aspergillus_zonatus_v1.0 9 9
Penicillium_chrysogenum_Wisconsin_54-1255_ 5 5
Penicillium_chrysogenum_v1.0 4 4
Aspergillus_acidus_v1.0 4 4
Aspergillus_fumigatus_Af293 5 5
Aspergillus_brasiliensis_v1.0 4 4
Aspergillus_nidulans_FGSC_A4_ 4 4
Aspergillus_sydowii_v1.0 4 4
Aspergillus_versicolor_v1.0 5 5
Aspergillus_glaucus 5 5
Aspergillus_carbonarius_ITEM_5010_ 4 4
Neosartorya_fischeri_NRRL_181_ 6 6
Aspergillus_terreus_NIH2624_ 4 4
Aspergillus_tubingensis_v1.0 5 5
Aspergillus_wentii_v1.0 3 3
Aspergillus_oryzae_RIB40_ 5 5
Aspergillus_niger_22 6 6
Aspergillus_niger_ATCC_1015_ 4 4
Aspergillus_flavus_NRRL3357_ 5 5
Aspergillus_clavatus_NRRL_1_ 7 7
Penicillium_marneffei_ATCC_18224_ 4 4
Tuber_melanosporum_Mel28_22 4 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4 4
Hansenula_polymorpha_v2.0 4 4
Dekkera_bruxellensis_CBS_2499_v2.0 8 8
Pichia_membranifaciensv1.0 7 7
Candida_tanzawaensis_NRRL_Y-17324__v1.0 6 6
Candida_dubliniensis_CD36_ 14 14
Candida_tropicalis_MYA-3404_ 12 12
Candida_parapsilosis_ 20 20
Candida_albicans_SC5314 11 11
Lodderomyces_elongisporus_NRRL_YB-4239_ 29 29
Babjeviella_inositovora_NRRL_Y-12698_v1.0 6 6
Pichia_stipitis_CBS_6054_ 10 10
Candida_guilliermondii_ATCC_6260_ 7 7
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 7 7
Debaromyces_hansenii 5 5
Wickerhamomyces_anomalus 6 6
Pichia_pastoris_GS115_ 9 9
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 4 4
Yarrowia_lipolytica_CLIB122 11 11
Candida_lusitaniae_ATCC_42720_ 7 7
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 7 7
Vanderwaltozyma_polyspora_DSM_70294_ 12 12
Candida_glabrata_CBS138 6 6
Kluyveromyces_thermotolerans_CBS_6340 4 4
Lachancea_kluyveri_ 12 12
Kluyveromyces_waltii 8 8
Ashbya_gossypii_ATCC_10895_ 5 5
Zygosaccharomyces_rouxii_ 11 11
Saccharomyces_mikatae_MIT 5 5
Saccharomyces_paradoxus_MIT 7 7
Saccharomyces_cerevisiae_76   (Baker's yeast)   6 6
Saccharomyces_bayanus_MIT 10 10
Kluyveromyces_lactis 7 7
Schizosaccharomyces_cryophilus_OY26_22 5 5
Schizosaccharomyces_octosporus_yFS286_ 5 5
Schizosaccharomyces_japonicus_yFS275_ 6 6
Schizosaccharomyces_pombe   (Fission yeast)   4 4
Catenaria_anguillulae_PL171_v1.0 6 6
Allomyces_macrogynus_ATCC_38327_ 11 11
Spizellomyces_punctatus_DAOM_BR117_ 7 7
Dictyostelium_discoideum 147 145
Dictyostelium_purpureum_ 38 38
Entamoeba_dispar_1.2 7 7
Entamoeba_invadens_1.2 7 7
Entamoeba_histolytica_1 8 8
Selaginella_moellendorffii_ 15 15
Pinus_taeda   (Loblolly pine)   7 6
Picea_abies   (Norway spruce)   6 6
Eucalyptus_grandis_v201   (Rose gum)   14 14
Theobroma_cacao_B97-61/B2_v1   (Cacao)   12 12
Gossypium_raimondii_v221 70 70
Citrus_clementina_v165 19 19
Citrus_sinensis_v154   (Sweet orange)   33 33
Thellungiella_halophila_v173 11 11
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   16 16
Capsella_rubella_v183 17 17
Arabidopsis_lyrata_   (Lyrate rockcress)   15 15
Arabidopsis_thaliana_10   (Thale cress)   25 25
Carica_papaya_   (Papaya)   12 12
Medicago_truncatula_   (Barrel medic)   15 15
Phaseolus_vulgaris_v186   (French bean)   15 15
Glycine_max_v109   (Soybean)   25 25
Cucumis_sativus_v122   (Cucumber)   15 15
Fragaria_vesca_   (Wild strawberry)   11 11
Malus_domestica_v196   (Apple)   32 32
Prunus_persica_v139   (Peach)   12 12
Linum_usitatissimum_v200   (Flax)   21 21
Manihot_esculenta_v147   (Cassava)   14 14
Populus_trichocarpa_v156   (Black cottonwood)   21 21
Vitis_vinifera_   (Wine grape)   8 8
Mimulus_guttatus_v140   (Spotted monkey flower)   9 9
Solanum_lycopersicum_v.2.3   (Tomato)   12 12
Solanum_tuberosum_   (Potato)   11 11
Actinidia_chinensis_Hongyang_ 13 13
Aquilegia_coerulea_v195 18 18
Triticum_urartu_22 12 12
Triticum_aestivum_22   (Bread wheat)   39 39
Aegilops_tauschii_22 13 12
Brachypodium_distachyon_   (Stiff brome)   17 17
Oryza_barthii_22   (African wild rice)   19 19
Oryza_meridionalis_22 18 18
Oryza_glumaepatula_22 23 23
Oryza_glaberrima   (African rice)   8 8
Oryza_punctata_22 19 19
Oryza_nivara_22 22 22
Oryza_brachyantha_22   (Malo sina)   11 11
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   22 22
Oryza_sativa_v193   (Rice)   21 21
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   19 19
Panicum_virgatum_v202   (Switchgrass)   26 26
Setaria_italica_v164   (Foxtail millet)   21 21
Zea_mays_subsp._mays_   (Maize)   25 25
Zea_mays_v181   (Maize)   24 24
Sorghum_bicolor_   (Sorghum)   13 13
Musa_balbisiana   (Balbis banana)   20 19
Musa_acuminata_22   (Wild Malaysian banana)   19 19
Amborella_trichopoda_22 7 7
Physcomitrella_patens 15 15
Coccomyxa_subellipsoidea_sp._C-169_v2 9 9
Asterochloris_sp._Cgr/DA1pho_v1.0 4 4
Chlorella_variabilis_sp._NC64A_ 8 8
Chlorella_vulgaris_ 8 8
Volvox_carteri_f._nagariensis_ 15 15
Volvox_carteri_v199 16 16
Chlamydomonas_reinhardtii_4.0 21 21
Ostreococcus_sp._RCC809_ 6 6
Ostreococcus_lucimarinus_CCE9901_ 5 5
Ostreococcus_tauri_ 7 7
Bathycoccus_prasinos_ 11 11
Micromonas_sp._RCC299_ 8 8
Micromonas_pusilla_CCMP1545_v3.0 6 6
Cyanidioschyzon_merolae_strain_10D_22 4 3
Cyanidioschyzon_merolae 4 3
Porphyridium_purpureum_02_2012 8 7
Thecamonas_trahens_ATCC_50062_ 4 4
Bigelowiella_natans_CCMP2755_22 7 7
Giardia_lamblia_2.3 5 5
Cyanophora_paradoxa_ 6 6
Leishmania_mexicana_2.4 4 4
Leishmania_major_strain_Friedlin_ 4 4
Leishmania_infantum_JPCM5_2.4 5 5
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 4 4
Trypanosoma_vivax_ 7 6
Trypanosoma_cruzi_strain_CL_Brener 6 6
Trypanosoma_congolense_2.4 7 7
Trypanosoma_brucei_gambiense_v4.1 8 8
Trypanosoma_brucei_TREU927_v4.1 6 6
Ectocarpus_siliculosus 5 5
Aureococcus_anophagefferens_ 2 2
Albugo_laibachii_22 3 3
Pythium_iwayamai_DAOM_BR242034_22 3 3
Pythium_arrhenomanes_ATCC_12531_22 4 4
Pythium_ultimum_v1.7-2 3 3
Pythium_aphanidermatum_DAOM_BR444_22 3 3
Pythium_irregulare_DAOM_BR486_22 4 4
Pythium_vexans_DAOM_BR484_22 4 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3 3
Phytophthora_sojae_1.1 7 7
Phytophthora_infestans_T30-4_ 4 4
Phytophthora_capsici_ 3 3
Hyaloperonospora_arabidopsidis_22 4 4
Phaeodactylum_tricornutumCCAP_1055/1 4 4
Fragilariopsis_cylindrus 18 18
Thalassiosira_pseudonana_CCMP1335 4 4
Perkinsus_marinus_ATCC_50983_ 11 11
Paramecium_tetraurelia_ 25 25
Tetrahymena_thermophila_SB210_1_ 10 10
Ichthyophthirius_multifiliis_strain_G5_ 13 13
Cryptosporidium_hominis 3 3
Cryptosporidium_muris 4 4
Cryptosporidium_parvum_Iowa_II 3 3
Neospora_caninum 4 4
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 3 3
Toxoplasma_gondii_GT1 3 3
Babesia_bovis_T2Bo_ 6 6
Theileria_parva__ 3 3
Theileria_annulata 3 3
Plasmodium_falciparum_3D7_ 4 4
Plasmodium_vivax_SaI-1_7.0 7 7
Plasmodium_knowlesi_strain_H_ 4 4
Plasmodium_yoelii_ssp._yoelii_1_ 4 4
Plasmodium_chabaudi_ 3 3
Plasmodium_berghei_ANKA_ 3 3
Symbiodinium_minutum_clade_B1_v1.2 9 9
Naegleria_gruberi_ 6 6
Trichomonas_vaginalis_ 46 46
Guillardia_theta_CCMP2712_v1.0_ 14 14
Emiliania_huxleyi_CCMP1516_ 20 19
Thermosynechococcus_elongatus_BP-1 1 1
Mycoplasma_hyorhinis_GDL-1 1 1
Eggerthella_sp._YY7918 1 1
Eggerthella_lenta_DSM_2243 1 1
Thermobispora_bispora_DSM_43833 1 1
Nakamurella_multipartita_DSM_44233 1 1
Modestobacter_marinus 1 1
Geodermatophilus_obscurus_DSM_43160 1 1
Stackebrandtia_nassauensis_DSM_44728 1 1
Frankia_symbiont_of_Datisca_glomerata 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1 1
Kitasatospora_setae_KM-6054 2 2
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 2 2
Streptomyces_violaceusniger_Tu_4113 2 2
Streptomyces_avermitilis_MA-4680 3 3
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2 2
Pseudonocardia_dioxanivorans_CB1190 1 1
Amycolatopsis_mediterranei_U32 1 1
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1 1
Verrucosispora_maris_AB-18-032 1 1
Micromonospora_sp._L5 2 2
Micromonospora_aurantiaca_ATCC_27029 2 2
Actinoplanes_sp._SE50/110 1 1
Actinoplanes_missouriensis_431 1 1
Gordonia_sp._KTR9 1 1
Gordonia_polyisoprenivorans_VH2 1 1
Gordonia_bronchialis_DSM_43247 3 3
Rhodococcus_jostii_RHA1 1 1
Rhodococcus_opacus_B4 1 1
Nocardia_cyriacigeorgica_GUH-2 4 4
Nocardia_farcinica_IFM_10152 1 1
Mycobacterium_abscessus_ATCC_19977 1 1
Mycobacterium_sp._JLS 2 2
Mycobacterium_gilvum_PYR-GCK 1 1
Corynebacterium_jeikeium_K411 1 1
Corynebacterium_variabile_DSM_44702 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Jonesia_denitrificans_DSM_20603 1 1
Cellulomonas_fimi_ATCC_484 2 2
[Cellvibrio]_gilvus_ATCC_13127 1 1
Rothia_mucilaginosa_DY-18 1 1
Bifidobacterium_dentium_Bd1 3 3
Bifidobacterium_bifidum_S17 1 1
Herpetosiphon_aurantiacus_DSM_785 1 1
Roseburia_hominis_A2-183 1 1
Prevotella_ruminicola_23 1 1
Parachlamydia_acanthamoebae_UV-7 1 1
Pirellula_staleyi_DSM_6068 1 1
Spirochaeta_africana_DSM_8902 1 1
Candidatus_Solibacter_usitatus_Ellin6076 2 2
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 1 1
Cupriavidus_metallidurans_CH34 1 1
Acidovorax_citrulli_AAC00-1 1 1
Herbaspirillum_seropedicae_SmR1 1 1
Azospirillum_lipoferum_4B 1 1
Methylobacterium_nodulans_ORS_2060 1 1
Ochrobactrum_anthropi_ATCC_49188 1 1
Sinorhizobium_medicae_WSM419 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Klebsiella_oxytoca_E718 1 1
Francisella_sp._TX077308 1 1
Hyperthermus_butylicus_DSM_5456 1 1
Ignisphaera_aggregans_DSM_17230 1 1
Staphylothermus_hellenicus_DSM_12710 1 1
Natrialba_magadii_ATCC_43099 1 1
Halorubrum_lacusprofundi_ATCC_49239 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   17 16
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   64 62
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   20 20
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3 3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4 4
Cryptococcus_neoformans_var._grubii_H99_ 3 3
Cryptococcus_neoformans_B-3501A_ 3 3
Cryptococcus_neoformans_JEC21_ 4 4
Paracoccidioides_brasiliensis_Pb01_ 8 8
Paracoccidioides_brasiliensis_Pb03_ 7 7
Coccidioides_posadasii_str._Silveira_ 3 3
Coccidioides_immitis_RMSCC_3703_ 6 6
Coccidioides_immitis_RMSCC_2394_ 3 3
Coccidioides_immitis_H538.4_ 3 3
Ajellomyces_dermatitidis_ER-3_ 7 7
Histoplasma_capsulatum_H143 7 7
Histoplasma_capsulatum_H88 7 7
Histoplasma_capsulatum_G186AR 8 8
Aspergillus_fumigatus_A1163_ 6 6
Candida_albicans_WO-1_ 10 10
Saccharomyces_cerevisiae_UC5 4 4
Saccharomyces_cerevisiae_PW5 3 3
Saccharomyces_cerevisiae_FL100 2 2
Saccharomyces_cerevisiae_CLIB324 4 4
Saccharomyces_cerevisiae_CBS7960 5 5
Saccharomyces_cerevisiae_YJM269 6 6
Saccharomyces_cerevisiae_T7 5 5
Saccharomyces_cerevisiae_FostersB 4 4
Saccharomyces_cerevisiae_FostersO 4 4
Saccharomyces_cerevisiae_VL3 6 6
Saccharomyces_cerevisiae_Vin13 5 5
Saccharomyces_cerevisiae_LalvinQA23 7 7
Saccharomyces_cerevisiae_AWRI796 4 4
Saccharomyces_cerevisiae_Sigma1278b 6 6
Saccharomyces_cerevisiae_W303 6 6
Saccharomyces_cerevisiae_JAY291 5 5
Saccharomyces_cerevisiae_AWRI1631 4 4
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_T73 3 3
Saccharomyces_cerevisiae_CLIB215 3 3
Saccharomyces_cerevisiae_Y10 2 2
Saccharomyces_cerevisiae_YJM789_ 5 5
Saccharomyces_cerevisiae_YJM789 5 5
Saccharomyces_cerevisiae_RM11-1a 8 8
Saccharomyces_cerevisiae_RM11-1a_ 7 7
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   6 6
Schizosaccharomyces_pombe_972h-_ 4 4
Batrachochytrium_dendrobatidis_JEL423_ 4 4
Batrachochytrium_dendrobatidis_JAM81_ 4 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   15 15
Hordeum_vulgare_22   (Domesticated barley)   24 24
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   14 14
Trypanosoma_brucei_Lister_427_v4.1 7 7
Neospora_caninum_Nc-Liverpool_6.2 4 4
Plasmodium_falciparum_HB3_ 5 5
Plasmodium_falciparum_Dd2_ 4 4
Oscillatoria_nigro-viridis_PCC_7112 1 1
Oscillatoria_acuminata_PCC_6304 1 1
Cyanothece_sp._PCC_7822 1 1
Spiroplasma_syrphidicola_EA-1 1 1
Spiroplasma_chrysopicola_DF-1 1 1
Mycoplasma_hyorhinis_SK76 1 1
Mycoplasma_hyorhinis_HUB-1 1 1
Mycoplasma_hyorhinis_DBS_1050 1 1
Mycoplasma_hyopneumoniae_168-L 1 1
Mycoplasma_hyopneumoniae_7422 1 1
Mycoplasma_hyopneumoniae_232 1 1
Mycoplasma_hyopneumoniae_J 1 1
Frankia_sp._EuI1c 1 1
Streptomyces_albus_J1074 4 4
Streptomyces_rapamycinicus_NRRL_5491 2 2
Streptomyces_davawensis_JCM_4913 2 2
Streptomyces_fulvissimus_DSM_40593 2 2
Streptomyces_collinus_Tu_365 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2 2
Saccharothrix_espanaensis_DSM_44229 1 1
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Propionibacterium_acidipropionici_ATCC_4875 1 1
Actinoplanes_friuliensis_DSM_7358 1 1
Nocardia_brasiliensis_ATCC_700358 1 1
Mycobacterium_abscessus_subsp._bolletii_50594 2 2
Mycobacterium_sp._KMS 2 2
Mycobacterium_sp._MCS 2 2
Mycobacterium_intracellulare_MOTT-64 1 1
Mycobacterium_indicus_pranii_MTCC_9506 1 1
Mycobacterium_intracellulare_MOTT-02 1 1
Corynebacterium_terpenotabidum_Y-11 1 1
Corynebacterium_callunae_DSM_20147 1 1
Corynebacterium_glutamicum_MB001 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Bifidobacterium_thermophilum_RBL67 1 1
Bifidobacterium_bifidum_PRL2010 1 1
Bifidobacterium_bifidum_BGN4 1 1
Actinomyces_odontolyticus_ATCC_17982 1 1
Eubacterium_siraeum_V10Sc8a 1 1
Amphibacillus_xylanus_NBRC_15112 1 1
Bacillus_megaterium_WSH-002 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Sorangium_cellulosum_So0157-2 1 1
Anaeromyxobacter_sp._K 1 1
Anaeromyxobacter_dehalogenans_2CP-C 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_1026b 1 1
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_mallei_NCTC_10247 1 1
Methylobacterium_extorquens_DM4 1 1
Yersinia_pestis_A1122 1 1
Yersinia_pestis_Z176003 1 1
Yersinia_pestis_D182038 1 1
Yersinia_pestis_D106004 1 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1 1
Yersinia_pestis_Nepal516 1 1
Yersinia_pestis_Antiqua 1 1
Yersinia_pestis_CO92 1 1
Yersinia_pestis_KIM10+ 1 1
Escherichia_coli_UMN026 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   13 11
Pan_troglodytes_69_2.1.4   (Chimpanzee)   11 10
Gorilla_gorilla_69_3.1   (Western gorilla)   9 7
Pongo_abelii_69_2   (Sumatran orangutan)   15 13
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   14 11
Macaca_mulatta_69_1   (Rhesus monkey)   14 13
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   12 11
Otolemur_garnettii_69_3   (Small-eared galago)   10 8
Microcebus_murinus_69_1   (Gray mouse lemur)   9 9
Rattus_norvegicus_69_3.4   (Norway rat)   14 13
Mus_musculus_69_38   (House mouse)   15 14
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8 7
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   11 10
Cavia_porcellus_69_3   (Domestic guinea pig)   9 8
Oryctolagus_cuniculus_69_2   (Rabbit)   9 8
Ochotona_princeps_69   (American pika)   8 7
Tupaia_belangeri_69   (Northern tree shrew)   11 8
Sus_scrofa_69_10.2   (Pig)   14 12
Bos_taurus_69_3.1   (Cattle)   12 10
Vicugna_pacos_69_1   (Alpaca)   9 8
Tursiops_truncatus_69_1   (Bottlenose dolphin)   12 10
Mustela_putorius_furo_69_1.0   (Domestic ferret)   9 8
Ailuropoda_melanoleuca_69_1   (Giant panda)   11 9
Canis_familiaris_69_3.1   (Dog)   12 11
Felis_catus_69   (Domestic cat)   7 5
Equus_caballus_69_2   (Horse)   8 6
Myotis_lucifugus_69_2.0   (Little brown bat)   10 9
Pteropus_vampyrus_69_1   (Large flying fox)   11 11
Sorex_araneus_69_1   (European shrew)   12 11
Erinaceus_europaeus_69   (Western European hedgehog)   10 9
Procavia_capensis_69_1   (Cape rock hyrax)   9 9
Loxodonta_africana_69_3   (African savanna elephant)   9 8
Echinops_telfairi_69   (Small Madagascar hedgehog)   13 11
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10 9
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   7 6
Macropus_eugenii_69_1.0   (Tammar wallaby)   11 11
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   13 12
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   23 21
Ornithorhynchus_anatinus_69_5   (Platypus)   15 12
Petromyzon_marinus_69_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_69_2   (Turkey)   8 7
Gallus_gallus_69_2   (Chicken)   9 8
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8 7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9 8
Anolis_carolinensis_69_2.0   (Green anole)   11 9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   10 8
Latimeria_chalumnae_69_1   (Coelacanth)   14 12
Gadus_morhua_69_1   (Atlantic cod)   8 8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   8 7
Takifugu_rubripes_69_4   (Torafugu)   11 10
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   8 7
Oryzias_latipes_69_1   (Japanese medaka)   8 7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   8 7
Oreochromis_niloticus_69_1.0   (Nile tilapia)   11 10
Danio_rerio_69_9   (Zebrafish)   11 10
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4 4
Ciona_intestinalis_69   (Vase tunicate)   3 3
Drosophila_melanogaster_69_5   (Fruit fly)   31 30
Caenorhabditis_elegans_69_215   (Roundworm)   4 4
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   6 6
Arabidopsis_thaliana_10   (Thale cress)   16 16

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   51 48
Homo_sapiens__(NCBI_version)   (Human)   22 20
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   13 12
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   14 14
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   12 12
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   9 9
Moniliophthora_perniciosa_FA553__(Genome_survey) 4 4
Encephalitozoon_intestinalis__(endoparasite) 3 3
Encephalitozoon_cuniculi_(endoparasite) 3 3
Lotus_japonicus__(Early_assembly) 12 12
Malus_x_domestica_(Duplicate)   (Apple)   32 32
Ricinus_communis__(Early_assembly)   (Castor bean)   9 9
Nicotiana_benthamiana_0.4.4_(Early_draft) 22 21
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   12 12
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   12 12
Phoenix_dactylifera__(Early_draft)   (Date palm)   10 10
NCBI_plasmid_sequences_(Plasmids) 5 5
Core_Eukaryotic_Genes_458_(CEGMA) 6 6
TargetDB__(Targets) 22 21
Protozoadb_2010_08_(Protozoadb) 204 204
NCBI_viral_sequences_(Viral) 11 11
STRING_v9.0.5_(STRING) 1405 1365
UniProt__viral_sequences_(Viral) 6 6
Uniprot_2018_03_genome 17855 17524
NCBI_2017_08_genome 21170 20533
Protein_Data_Bank_(all_PDB_sequenc) 74 68
PDB_chains_(SCOP_1.75)_(PDB) 4 4
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 99 99

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