SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for MIR domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a MIR domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   46 30
Pan_troglodytes_76_2.1.4   (Chimpanzee)   17 11
Gorilla_gorilla_76_3.1   (Western gorilla)   24 14
Pongo_abelii_76_2   (Sumatran orangutan)   15 10
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   11 8
Papio_anubis_76   (Olive baboon)   15 10
Macaca_mulatta_76_1   (Rhesus monkey)   30 20
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   22 15
Otolemur_garnettii_76_3   (Small-eared galago)   18 11
Microcebus_murinus_76_1   (Gray mouse lemur)   14 10
Rattus_norvegicus_76_5.0   (Norway rat)   21 14
Mus_musculus_76_38   (House mouse)   29 18
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   11 9
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   14 9
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   15 9
Cavia_porcellus_76_3   (Domestic guinea pig)   14 9
Oryctolagus_cuniculus_76_2   (Rabbit)   12 9
Ochotona_princeps_76   (American pika)   13 8
Tupaia_belangeri_76   (Northern tree shrew)   11 8
Sus_scrofa_76_10.2   (Pig)   10 9
Bos_taurus_76_3.1   (Cattle)   20 12
Ovis_aries_76_3.1   (Sheep)   16 10
Vicugna_pacos_76_1   (Alpaca)   8 5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   16 10
Mustela_putorius_furo_76_1.0   (Domestic ferret)   18 11
Ailuropoda_melanoleuca_76_1   (Giant panda)   18 11
Canis_familiaris_76_3.1   (Dog)   22 14
Felis_catus_76_6.2   (Domestic cat)   17 11
Equus_caballus_76_2   (Horse)   40 22
Myotis_lucifugus_76_2.0   (Little brown bat)   15 10
Pteropus_vampyrus_76_1   (Large flying fox)   15 10
Sorex_araneus_76_1   (European shrew)   7 6
Erinaceus_europaeus_76   (Western European hedgehog)   15 10
Procavia_capensis_76_1   (Cape rock hyrax)   13 10
Loxodonta_africana_76_3   (African savanna elephant)   14 10
Echinops_telfairi_76   (Small Madagascar hedgehog)   14 9
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   15 9
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   10 7
Macropus_eugenii_76_1.0   (Tammar wallaby)   14 9
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   17 10
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   16 10
Ornithorhynchus_anatinus_76_5   (Platypus)   17 14
Saccoglossus_kowalevskii_v3.0 21 18
Petromyzon_marinus_76_7.0   (Sea lamprey)   5 3
Meleagris_gallopavo_76_2   (Turkey)   15 10
Gallus_gallus_76_4   (Chicken)   11 8
Anas_platyrhynchos_76_1.0   (Mallard)   12 9
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   13 9
Ficedula_albicollis_76_1.0   (Collared flycatcher)   12 8
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   15 11
Anolis_carolinensis_76_2.0   (Green anole)   14 9
Xenopus_laevis_   (African clawed frog)   12 10
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   12 8
Latimeria_chalumnae_76_1   (Coelacanth)   16 11
Lepisosteus_oculatus_76   (Spotted gar)   22 13
Gadus_morhua_76_1   (Atlantic cod)   20 13
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   43 27
Takifugu_rubripes_76_4   (Torafugu)   113 68
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   25 17
Oryzias_latipes_76_1   (Japanese medaka)   29 18
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   22 13
Poecilia_formosa_76   (Amazon molly)   21 13
Oreochromis_niloticus_76_1.0   (Nile tilapia)   24 15
Astyanax_mexicanus_76   (Mexican tetra)   22 16
Danio_rerio_76_9   (Zebrafish)   30 19
Oikopleura_dioica 5 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   36 19
Ciona_intestinalis_76   (Vase tunicate)   9 6
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   10 8
Adineta_vaga 21 16
Octopus_bimaculoides_280 10 7
Crassostrea_gigas_22   (Pacific oyster)   14 9
Lottia_gigantea_   (Owl limpet)   13 8
Helobdella_robusta_ 9 6
Capitella_sp._I_ 15 10
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9 6
Heliconius_melpomene_   (Postman butterfly)   5 4
Bombyx_mori_   (Domestic silkworm)   4 4
Nasonia_vitripennis_   (Jewel wasp)   5 4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   18 10
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   6 5
Linepithema_humile_v1.1   (Argentine ant)   7 5
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   6 5
Solenopsis_invicta_v.2.2.3   (Red fire ant)   5 4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   7 5
Atta_cephalotes_v1.1 6 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   6 5
Lucilia_cuprina   (Australian sheep blowfly)   7 5
Drosophila_grimshawi_1.3 7 5
Drosophila_willistoni_1.3 7 5
Drosophila_pseudoobscura_2.13 7 5
Drosophila_persimilis_1.3 7 5
Drosophila_suzukii 14 8
Drosophila_yakuba_1.3 7 5
Drosophila_simulans_1.3 7 5
Drosophila_sechellia_1.3 8 6
Drosophila_melanogaster_76_5   (Fruit fly)   27 15
Drosophila_erecta_1.3 7 5
Drosophila_ananassae_1.3 7 5
Drosophila_virilis_1.2 7 5
Drosophila_mojavensis_1.3 7 5
Megaselia_scalaris_22 4 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   8 6
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   6 5
Anopheles_darlingi_22   (American malaria mosquito)   4 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   7 5
Tribolium_castaneum_3.0   (Red flour beetle)   7 5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   7 5
Acyrthosiphon_pisum_   (Pea aphid)   5 4
Rhodnius_prolixus_22 6 5
Daphnia_pulex_   (Common water flea)   10 8
Strigamia_maritima_22 7 5
Sarcoptes_scabiei 6 5
Tetranychus_urticae_   (Two-spotted spider mite)   6 4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   5 4
Pristionchus_pacificus_ 5 3
Meloidogyne_incognita_   (Southern root-knot nematode)   2 1
Meloidogyne_hapla_ 3 2
Onchocerca_volvulus_22 4 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   9 5
Caenorhabditis_japonica_ 4 3
Caenorhabditis_brenneri_ 11 7
Caenorhabditis_remanei_ 5 3
Caenorhabditis_elegans_76_235   (Roundworm)   21 11
Caenorhabditis_briggsae_2 7 4
Trichinella_spiralis_22 8 5
Hymenolepis_microstoma_ 3 2
Echinococcus_multilocularis_ 3 2
Echinococcus_granulosus_ 3 2
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 5 3
Mnemiopsis_leidyi   (Sea walnut)   5 4
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 4 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   8 6
Hydra_vulgaris 5 4
Amphimedon_queenslandica 20 15
Trichoplax_adhaerens_ 10 7
Proterospongia_sp._ATCC_50818_ 13 12
Monosiga_brevicollis_ 9 7
Sphaeroforma_arctica_JP610_ 9 9
Capsaspora_owczarzaki_ATCC_30864_ 8 7
Conidiobolus_coronatus_NRRL28638_v1.0 12 10
Mortierella_verticillata_NRRL_6337_ 11 11
Phycomyces_blakesleeanus_ 12 11
Rhizopus_oryzae_RA_99-880_ 11 11
Mucor_circinelloides_ 13 12
Rhizomucor_miehei_CAU432_ 10 9
Malassezia_globosa_CBS_7966_ 6 6
Sporisorium_reilianum_22 3 3
Ustilago_maydis_ 3 3
Mixia_osmundae_IAM_14324_v1.0 3 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3 3
Melampsora_laricis-populina_ 3 3
Rhodotorula_graminis_WP1_v1.0 3 3
Sporobolomyces_roseus_IAM_13481_ 3 3
Microbotryum_violaceum_22 3 3
Wallemia_sebi_v1.0 3 3
Sphaerobolus_stellatus_v1.0 3 3
Piloderma_croceum_F_1598_v1.0 4 3
Serpula_lacrymans_var._lacrymans_S7.9_ 3 3
Coniophora_puteana 3 3
Hydnomerulius_pinastri_v2.0 3 3
Paxillus_rubicundulus_Ve08.2h10_v1.0 3 3
Pisolithus_microcarpus_441_v1.0 3 3
Pisolithus_tinctorius_Marx_270_v1.0 4 4
Scleroderma_citrinum_Foug_A_v1.0 5 5
Coprinopsis_cinerea_okayama7_130_v3 3 3
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 3 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3 3
Galerina_marginata_v1.0 3 3
Hebeloma_cylindrosporum_h7_v2.0 3 3
Laccaria_bicolor_S238N-H82_ 4 4
Agaricus_bisporus_var._bisporus_ 3 3
Schizophyllum_commune_ 3 3
Stereum_hirsutum_FP-91666_SS1__v1.0 3 3
Heterobasidion_annosum_ 3 3
Gloeophyllum_trabeumv1.0 3 3
Punctularia_strigosozonata_v1.0 3 3
Sebacina_vermifera_MAFF_305830_v1.0 4 4
Fomitiporia_mediterranea_v1.0 3 3
Tulasnella_calospora_AL13/4D_v1.0 3 3
Postia_placenta_ 5 5
Wolfiporia_cocos_MD-104_SS10__v1.0 3 3
Fomitopsis_pinicolav1.0 3 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3 3
Phanerochaete_chrysosporium_RP-78_2.1 3 3
Dichomitus_squalens 3 3
Trametes_versicolor_v1.0 3 3
Tremella_mesenterica_   (Witches' butter)   3 3
Daldinia_eschscholzii_EC12_v1.0 3 3
Apiospora_montagnei_NRRL_25634_v1.0 3 3
Magnaporthe_poae_ATCC_64411_22 3 3
Magnaporthe_grisea_70-15_ 3 3
Podospora_anserina_ 3 3
Sporotrichum_thermophile_ATCC_42464_ 3 3
Thielavia_terrestris_NRRL_8126_ 3 3
Chaetomium_globosum_CBS_148.51_ 3 3
Neurospora_tetrasperma_ 3 3
Neurospora_discreta_FGSC_8579_ 3 3
Neurospora_crassa_OR74A_ 3 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   3 3
Verticillium_albo-atrum_VaMs.102_ 3 3
Verticillium_dahliae_VdLs.17_ 3 3
Acremonium_alcalophilumv_1.0 3 3
Glomerella_graminicola_22 3 3
Fusarium_graminearum_ 3 3
Nectria_haematococca_mpVI_ 3 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 3 3
Trichoderma_asperellum_CBS_433.97_v1.0 3 3
Trichoderma_atroviride_ 3 3
Trichoderma_citrinoviride_v1.0 3 3
Trichoderma_reesei_1.2 3 3
Trichoderma_virens_Gv29-8_ 3 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3 3
Trichoderma_harzianum_CBS_226.95_v1.0 3 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   3 3
Botrytis_cinerea_B05.10_ 3 3
Sclerotinia_sclerotiorum_ 3 3
Blumeria_graminis_22 3 3
Didymella_exigua_CBS_183.55_v1.0 3 3
Leptosphaeria_maculans_22 3 3
Setosphaeria_turcica_v1.0 4 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3 3
Cochliobolus_victoriae_FI3_v1.0 3 3
Cochliobolus_carbonum_26-R-13_v1.0 3 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3 3
Alternaria_brassicicola_ 3 3
Cochliobolus_lunatus_m118_v2.0 3 3
Pyrenophora_teres_f._teres_22 3 3
Pyrenophora_tritici-repentis_ 3 3
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 3 3
Zasmidium_cellare_ATCC_36951_v1.0 3 3
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 3 3
Mycosphaerella_fijiensis_CIRAD86_ 3 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3 3
Paracoccidioides_brasiliensis_Pb18_ 3 3
Coccidioides_posadasii_RMSCC_3488_ 3 3
Coccidioides_immitis_RS_ 3 3
Ajellomyces_dermatitidis_SLH14081_ 3 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3 3
Microsporum_canis_CBS_113480_ 3 3
Trichophyton_equinum_CBS_127.97_ 2 2
Trichophyton_verrucosum_HKI_0517_ 3 3
Arthroderma_benhamiae_CBS_112371_ 3 3
Trichophyton_tonsurans_CBS_112818_ 3 3
Trichophyton_rubrum_CBS_118892_ 3 3
Uncinocarpus_reesii_1704_ 3 3
Aspergillus_zonatus_v1.0 3 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 3 3
Penicillium_chrysogenum_v1.0 3 3
Aspergillus_acidus_v1.0 3 3
Aspergillus_fumigatus_Af293 3 3
Aspergillus_brasiliensis_v1.0 3 3
Aspergillus_nidulans_FGSC_A4_ 3 3
Aspergillus_sydowii_v1.0 3 3
Aspergillus_versicolor_v1.0 3 3
Aspergillus_glaucus 3 3
Aspergillus_carbonarius_ITEM_5010_ 3 3
Neosartorya_fischeri_NRRL_181_ 3 3
Aspergillus_terreus_NIH2624_ 3 3
Aspergillus_tubingensis_v1.0 3 3
Aspergillus_wentii_v1.0 3 3
Aspergillus_oryzae_RIB40_ 3 3
Aspergillus_niger_22 3 3
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 3 3
Aspergillus_clavatus_NRRL_1_ 3 3
Penicillium_marneffei_ATCC_18224_ 3 3
Tuber_melanosporum_Mel28_22 3 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3 3
Hansenula_polymorpha_v2.0 5 5
Dekkera_bruxellensis_CBS_2499_v2.0 5 5
Pichia_membranifaciensv1.0 5 5
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5 5
Candida_dubliniensis_CD36_ 5 5
Candida_tropicalis_MYA-3404_ 5 5
Candida_parapsilosis_ 5 5
Candida_albicans_SC5314 5 5
Lodderomyces_elongisporus_NRRL_YB-4239_ 5 5
Babjeviella_inositovora_NRRL_Y-12698_v1.0 5 5
Pichia_stipitis_CBS_6054_ 5 5
Candida_guilliermondii_ATCC_6260_ 5 5
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5 5
Debaromyces_hansenii 5 5
Wickerhamomyces_anomalus 5 5
Pichia_pastoris_GS115_ 4 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 6 6
Yarrowia_lipolytica_CLIB122 4 4
Candida_lusitaniae_ATCC_42720_ 5 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5 5
Vanderwaltozyma_polyspora_DSM_70294_ 7 7
Candida_glabrata_CBS138 7 7
Kluyveromyces_thermotolerans_CBS_6340 5 5
Lachancea_kluyveri_ 5 5
Kluyveromyces_waltii 5 5
Ashbya_gossypii_ATCC_10895_ 4 4
Zygosaccharomyces_rouxii_ 5 5
Saccharomyces_mikatae_MIT 7 7
Saccharomyces_paradoxus_MIT 7 7
Saccharomyces_cerevisiae_76   (Baker's yeast)   7 7
Saccharomyces_bayanus_MIT 7 7
Kluyveromyces_lactis 5 5
Schizosaccharomyces_cryophilus_OY26_22 3 3
Schizosaccharomyces_octosporus_yFS286_ 3 3
Schizosaccharomyces_japonicus_yFS275_ 3 3
Schizosaccharomyces_pombe   (Fission yeast)   3 3
Catenaria_anguillulae_PL171_v1.0 3 3
Allomyces_macrogynus_ATCC_38327_ 8 6
Spizellomyces_punctatus_DAOM_BR117_ 5 5
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 2 2
Entamoeba_dispar_1.2 1 1
Entamoeba_invadens_1.2 1 1
Entamoeba_histolytica_1 1 1
Selaginella_moellendorffii_ 4 4
Pinus_taeda   (Loblolly pine)   1 1
Eucalyptus_grandis_v201   (Rose gum)   1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Gossypium_raimondii_v221 5 5
Citrus_clementina_v165 1 1
Citrus_sinensis_v154   (Sweet orange)   2 2
Thellungiella_halophila_v173 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1
Carica_papaya_   (Papaya)   1 1
Medicago_truncatula_   (Barrel medic)   3 3
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   4 4
Cucumis_sativus_v122   (Cucumber)   1 1
Fragaria_vesca_   (Wild strawberry)   2 2
Malus_domestica_v196   (Apple)   2 2
Linum_usitatissimum_v200   (Flax)   2 2
Manihot_esculenta_v147   (Cassava)   2 2
Populus_trichocarpa_v156   (Black cottonwood)   2 2
Vitis_vinifera_   (Wine grape)   2 2
Mimulus_guttatus_v140   (Spotted monkey flower)   2 2
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Solanum_tuberosum_   (Potato)   2 2
Actinidia_chinensis_Hongyang_ 1 1
Aquilegia_coerulea_v195 1 1
Triticum_aestivum_22   (Bread wheat)   8 8
Aegilops_tauschii_22 1 1
Brachypodium_distachyon_   (Stiff brome)   3 3
Oryza_barthii_22   (African wild rice)   2 2
Oryza_meridionalis_22 1 1
Oryza_glumaepatula_22 2 2
Oryza_glaberrima   (African rice)   2 2
Oryza_punctata_22 2 2
Oryza_nivara_22 2 2
Oryza_brachyantha_22   (Malo sina)   2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2 2
Oryza_sativa_v193   (Rice)   2 2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2 2
Panicum_virgatum_v202   (Switchgrass)   4 4
Setaria_italica_v164   (Foxtail millet)   2 2
Zea_mays_subsp._mays_   (Maize)   4 4
Zea_mays_v181   (Maize)   4 4
Sorghum_bicolor_   (Sorghum)   2 2
Musa_balbisiana   (Balbis banana)   4 3
Musa_acuminata_22   (Wild Malaysian banana)   4 4
Amborella_trichopoda_22 1 1
Physcomitrella_patens 3 3
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 2 2
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 3 2
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 3 3
Bigelowiella_natans_CCMP2755_22 1 1
Cyanophora_paradoxa_ 1 1
Leishmania_mexicana_2.4 2 2
Leishmania_major_strain_Friedlin_ 2 1
Leishmania_infantum_JPCM5_2.4 2 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 1 1
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 3 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 1 1
Phytophthora_capsici_ 5 5
Hyaloperonospora_arabidopsidis_22 1 1
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 2 2
Paramecium_tetraurelia_ 67 47
Tetrahymena_thermophila_SB210_1_ 32 26
Ichthyophthirius_multifiliis_strain_G5_ 32 22
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 2 2
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 3 3
Naegleria_gruberi_ 12 7
Trichomonas_vaginalis_ 8 8
Guillardia_theta_CCMP2712_v1.0_ 13 10
Emiliania_huxleyi_CCMP1516_ 6 4
Cellulomonas_fimi_ATCC_484 1 1
Chlamydophila_pecorum_E58 1 1
Chlamydophila_pneumoniae_TW-183 1 1
Chlamydophila_felis_Fe/C-56 1 1
Chlamydia_psittaci_01DC11 1 1
Chlamydia_trachomatis_B/Jali20/OT 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   24 17
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   15 9
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   7 5
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5 3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   17 9
Cryptococcus_neoformans_var._grubii_H99_ 3 3
Cryptococcus_neoformans_B-3501A_ 3 3
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 3 3
Paracoccidioides_brasiliensis_Pb03_ 3 3
Coccidioides_posadasii_str._Silveira_ 3 3
Coccidioides_immitis_RMSCC_3703_ 3 3
Coccidioides_immitis_RMSCC_2394_ 3 3
Coccidioides_immitis_H538.4_ 3 3
Ajellomyces_dermatitidis_ER-3_ 3 3
Histoplasma_capsulatum_H143 3 3
Histoplasma_capsulatum_H88 3 3
Histoplasma_capsulatum_G186AR 3 3
Aspergillus_fumigatus_A1163_ 3 3
Candida_albicans_WO-1_ 5 5
Saccharomyces_cerevisiae_UC5 6 6
Saccharomyces_cerevisiae_PW5 7 7
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CLIB324 2 2
Saccharomyces_cerevisiae_CBS7960 2 2
Saccharomyces_cerevisiae_YJM269 4 4
Saccharomyces_cerevisiae_T7 7 7
Saccharomyces_cerevisiae_FostersB 6 6
Saccharomyces_cerevisiae_FostersO 7 7
Saccharomyces_cerevisiae_VL3 7 7
Saccharomyces_cerevisiae_Vin13 7 7
Saccharomyces_cerevisiae_LalvinQA23 7 7
Saccharomyces_cerevisiae_AWRI796 7 7
Saccharomyces_cerevisiae_Sigma1278b 7 7
Saccharomyces_cerevisiae_W303 7 7
Saccharomyces_cerevisiae_JAY291 7 7
Saccharomyces_cerevisiae_AWRI1631 3 3
Saccharomyces_cerevisiae_YPS163 1 1
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_CLIB215 3 3
Saccharomyces_cerevisiae_Y10 1 1
Saccharomyces_cerevisiae_YJM789_ 7 7
Saccharomyces_cerevisiae_YJM789 7 7
Saccharomyces_cerevisiae_RM11-1a 7 7
Saccharomyces_cerevisiae_RM11-1a_ 6 6
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   7 7
Schizosaccharomyces_pombe_972h-_ 3 3
Batrachochytrium_dendrobatidis_JEL423_ 4 4
Batrachochytrium_dendrobatidis_JAM81_ 4 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1
Hordeum_vulgare_22   (Domesticated barley)   4 4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2 2
Neospora_caninum_Nc-Liverpool_6.2 1 1
Plasmodium_falciparum_HB3_ 1 1
Chlamydia_pecorum_P787 1 1
Chlamydia_pecorum_W73 1 1
Chlamydia_pecorum_PV3056/3 1 1
Chlamydophila_pneumoniae_LPCoLN 1 1
Chlamydophila_pneumoniae_J138 1 1
Chlamydophila_pneumoniae_CWL029 1 1
Chlamydophila_pneumoniae_AR39 1 1
Chlamydia_psittaci_WC 1 1
Chlamydia_psittaci_VS225 1 1
Chlamydia_psittaci_MN 1 1
Chlamydia_psittaci_84/55 1 1
Chlamydia_psittaci_08DC60 1 1
Chlamydia_psittaci_02DC15 1 1
Chlamydia_psittaci_C19/98 1 1
Chlamydia_psittaci_NJ1 1 1
Chlamydia_psittaci_CP3 1 1
Chlamydophila_psittaci_RD1 1 1
Chlamydia_psittaci_Mat116 1 1
Chlamydophila_psittaci_6BC 1 1
Chlamydophila_psittaci_6BC 1 1
Chlamydia_trachomatis_C/TW-3 1 1
Chlamydia_trachomatis_L2/434/Bu(f) 1 1
Chlamydia_trachomatis_L2/434/Bu(i) 1 1
Chlamydia_trachomatis_IU888 1 1
Chlamydia_trachomatis_IU824 1 1
Chlamydia_trachomatis_L2b/Canada2 1 1
Chlamydia_trachomatis_L2b/Canada1 1 1
Chlamydia_trachomatis_L3/404/LN 1 1
Chlamydia_trachomatis_L2b/Ams5 1 1
Chlamydia_trachomatis_L2b/Ams4 1 1
Chlamydia_trachomatis_L2b/Ams3 1 1
Chlamydia_trachomatis_L2b/Ams2 1 1
Chlamydia_trachomatis_L2b/Ams1 1 1
Chlamydia_trachomatis_L2b/795 1 1
Chlamydia_trachomatis_L2b/CV204 1 1
Chlamydia_trachomatis_L2b/LST 1 1
Chlamydia_trachomatis_L2b/UCH-2 1 1
Chlamydia_trachomatis_L2b/8200/07 1 1
Chlamydia_trachomatis_L2/25667R 1 1
Chlamydia_trachomatis_L1/224 1 1
Chlamydia_trachomatis_L1/115 1 1
Chlamydia_trachomatis_L1/440/LN 1 1
Chlamydia_trachomatis_K/SotonK1 1 1
Chlamydia_trachomatis_Ia/SotonIa3 1 1
Chlamydia_trachomatis_Ia/SotonIa1 1 1
Chlamydia_trachomatis_G/SotonG1 1 1
Chlamydia_trachomatis_F/SotonF3 1 1
Chlamydia_trachomatis_F/SW5 1 1
Chlamydia_trachomatis_F/SW4 1 1
Chlamydia_trachomatis_E/SotonE8 1 1
Chlamydia_trachomatis_E/SotonE4 1 1
Chlamydia_trachomatis_E/SW3 1 1
Chlamydia_trachomatis_D/SotonD6 1 1
Chlamydia_trachomatis_D/SotonD5 1 1
Chlamydia_trachomatis_D/SotonD1 1 1
Chlamydia_trachomatis_A/5291 1 1
Chlamydia_trachomatis_A/363 1 1
Chlamydia_trachomatis_RC-J/971 1 1
Chlamydia_trachomatis_RC-L2/55 1 1
Chlamydia_trachomatis_J/6276tet1 1 1
Chlamydia_trachomatis_RC-J/966 1 1
Chlamydia_trachomatis_RC-J(s)/122 1 1
Chlamydia_trachomatis_RC-F(s)/342 1 1
Chlamydia_trachomatis_RC-L2(s)/3 1 1
Chlamydia_trachomatis_RC-J/953 1 1
Chlamydia_trachomatis_RC-J943 1 1
Chlamydia_trachomatis_RC-Fs852 1 1
Chlamydia_trachomatis_RC-L2s46 1 1
Chlamydia_trachomatis_RC-F69 1 1
Chlamydia_trachomatis_L2c 1 1
Chlamydia_trachomatis_D-LC 1 1
Chlamydia_trachomatis_D-EC 1 1
Chlamydia_trachomatis_G/9301 1 1
Chlamydia_trachomatis_G/11074 1 1
Chlamydia_trachomatis_G/11222 1 1
Chlamydia_trachomatis_G/9768 1 1
Chlamydia_trachomatis_E/150 1 1
Chlamydia_trachomatis_E/11023 1 1
Chlamydia_trachomatis_B/TZ1A828/OT 1 1
Chlamydia_trachomatis_Sweden2 1 1
Chlamydia_trachomatis_E/Bour 1 1
Chlamydia_trachomatis_A2497 1 1
Chlamydia_trachomatis_A2497 1 1
Chlamydia_trachomatis_L2b/UCH-1/proctitis 1 1
Chlamydia_trachomatis_434/Bu 1 1
Chlamydia_trachomatis_A/HAR-13 1 1
Chlamydia_trachomatis_D/UW-3/CX 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   18 11
Pan_troglodytes_69_2.1.4   (Chimpanzee)   16 10
Gorilla_gorilla_69_3.1   (Western gorilla)   18 11
Pongo_abelii_69_2   (Sumatran orangutan)   15 10
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   9 7
Macaca_mulatta_69_1   (Rhesus monkey)   12 8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   9 7
Otolemur_garnettii_69_3   (Small-eared galago)   16 10
Microcebus_murinus_69_1   (Gray mouse lemur)   14 10
Rattus_norvegicus_69_3.4   (Norway rat)   18 12
Mus_musculus_69_38   (House mouse)   19 12
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   11 9
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   14 9
Cavia_porcellus_69_3   (Domestic guinea pig)   14 9
Oryctolagus_cuniculus_69_2   (Rabbit)   12 8
Ochotona_princeps_69   (American pika)   13 8
Tupaia_belangeri_69   (Northern tree shrew)   11 8
Sus_scrofa_69_10.2   (Pig)   10 9
Bos_taurus_69_3.1   (Cattle)   16 10
Vicugna_pacos_69_1   (Alpaca)   8 5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   16 10
Mustela_putorius_furo_69_1.0   (Domestic ferret)   16 10
Ailuropoda_melanoleuca_69_1   (Giant panda)   16 10
Canis_familiaris_69_3.1   (Dog)   16 10
Felis_catus_69   (Domestic cat)   15 10
Equus_caballus_69_2   (Horse)   18 11
Myotis_lucifugus_69_2.0   (Little brown bat)   15 10
Pteropus_vampyrus_69_1   (Large flying fox)   15 10
Sorex_araneus_69_1   (European shrew)   7 6
Erinaceus_europaeus_69   (Western European hedgehog)   15 10
Procavia_capensis_69_1   (Cape rock hyrax)   13 10
Loxodonta_africana_69_3   (African savanna elephant)   10 7
Echinops_telfairi_69   (Small Madagascar hedgehog)   14 9
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7 5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   10 7
Macropus_eugenii_69_1.0   (Tammar wallaby)   14 9
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   15 9
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   16 10
Ornithorhynchus_anatinus_69_5   (Platypus)   12 10
Petromyzon_marinus_69_7.0   (Sea lamprey)   5 3
Meleagris_gallopavo_69_2   (Turkey)   12 8
Gallus_gallus_69_2   (Chicken)   13 9
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   13 9
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   12 9
Anolis_carolinensis_69_2.0   (Green anole)   14 10
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   12 8
Latimeria_chalumnae_69_1   (Coelacanth)   14 10
Gadus_morhua_69_1   (Atlantic cod)   20 13
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   23 14
Takifugu_rubripes_69_4   (Torafugu)   21 13
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   23 15
Oryzias_latipes_69_1   (Japanese medaka)   21 12
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   22 13
Oreochromis_niloticus_69_1.0   (Nile tilapia)   23 14
Danio_rerio_69_9   (Zebrafish)   18 11
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   6 4
Ciona_intestinalis_69   (Vase tunicate)   7 5
Drosophila_melanogaster_69_5   (Fruit fly)   7 5
Caenorhabditis_elegans_69_215   (Roundworm)   5 3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   7 7
Arabidopsis_thaliana_10   (Thale cress)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   51 34
Homo_sapiens__(NCBI_version)   (Human)   26 17
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   17 11
Heliconius_numata__(Incomplete) 3 3
Loa_loa_v3.3_(Request)   (Eye worm)   6 4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   4 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5 3
Moniliophthora_perniciosa_FA553__(Genome_survey) 4 4
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 2 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   2 2
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 2 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Phoenix_dactylifera__(Early_draft)   (Date palm)   3 3
Protein_Data_Bank_(all_PDB_sequenc) 495 249
STRING_v9.0.5_(STRING) 793 605
Uniprot_2018_03_genome 10747 8374
PDB_chains_(SCOP_1.75)_(PDB) 2 2
NCBI_2017_08_genome 13588 8798
TargetDB__(Targets) 12 12
Protozoadb_2010_08_(Protozoadb) 44 41
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 404 404

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