SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for SET domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SET domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   192 192
Pan_troglodytes_76_2.1.4   (Chimpanzee)   43 43
Gorilla_gorilla_76_3.1   (Western gorilla)   66 66
Pongo_abelii_76_2   (Sumatran orangutan)   46 46
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   44 44
Papio_anubis_76   (Olive baboon)   48 48
Macaca_mulatta_76_1   (Rhesus monkey)   83 82
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   110 110
Otolemur_garnettii_76_3   (Small-eared galago)   50 50
Microcebus_murinus_76_1   (Gray mouse lemur)   38 38
Rattus_norvegicus_76_5.0   (Norway rat)   53 53
Mus_musculus_76_38   (House mouse)   124 124
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   40 39
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   41 41
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   44 43
Cavia_porcellus_76_3   (Domestic guinea pig)   46 46
Oryctolagus_cuniculus_76_2   (Rabbit)   51 51
Ochotona_princeps_76   (American pika)   37 37
Tupaia_belangeri_76   (Northern tree shrew)   34 33
Sus_scrofa_76_10.2   (Pig)   56 56
Bos_taurus_76_3.1   (Cattle)   52 52
Ovis_aries_76_3.1   (Sheep)   51 51
Vicugna_pacos_76_1   (Alpaca)   23 23
Tursiops_truncatus_76_1   (Bottlenose dolphin)   45 44
Mustela_putorius_furo_76_1.0   (Domestic ferret)   49 49
Ailuropoda_melanoleuca_76_1   (Giant panda)   51 51
Canis_familiaris_76_3.1   (Dog)   72 72
Felis_catus_76_6.2   (Domestic cat)   50 50
Equus_caballus_76_2   (Horse)   48 48
Myotis_lucifugus_76_2.0   (Little brown bat)   47 46
Pteropus_vampyrus_76_1   (Large flying fox)   44 44
Sorex_araneus_76_1   (European shrew)   29 29
Erinaceus_europaeus_76   (Western European hedgehog)   29 28
Procavia_capensis_76_1   (Cape rock hyrax)   40 39
Loxodonta_africana_76_3   (African savanna elephant)   64 64
Echinops_telfairi_76   (Small Madagascar hedgehog)   38 34
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   56 56
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   26 25
Macropus_eugenii_76_1.0   (Tammar wallaby)   38 37
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   57 57
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   43 43
Ornithorhynchus_anatinus_76_5   (Platypus)   48 48
Saccoglossus_kowalevskii_v3.0 85 85
Petromyzon_marinus_76_7.0   (Sea lamprey)   28 28
Meleagris_gallopavo_76_2   (Turkey)   41 41
Gallus_gallus_76_4   (Chicken)   49 49
Anas_platyrhynchos_76_1.0   (Mallard)   37 37
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   50 50
Ficedula_albicollis_76_1.0   (Collared flycatcher)   40 40
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   44 44
Anolis_carolinensis_76_2.0   (Green anole)   46 46
Xenopus_laevis_   (African clawed frog)   66 66
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   48 48
Latimeria_chalumnae_76_1   (Coelacanth)   52 52
Lepisosteus_oculatus_76   (Spotted gar)   58 58
Gadus_morhua_76_1   (Atlantic cod)   44 44
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   57 57
Takifugu_rubripes_76_4   (Torafugu)   131 131
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   53 53
Oryzias_latipes_76_1   (Japanese medaka)   50 50
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   54 54
Poecilia_formosa_76   (Amazon molly)   57 57
Oreochromis_niloticus_76_1.0   (Nile tilapia)   78 78
Astyanax_mexicanus_76   (Mexican tetra)   57 57
Danio_rerio_76_9   (Zebrafish)   111 111
Oikopleura_dioica 43 43
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   31 31
Ciona_intestinalis_76   (Vase tunicate)   22 22
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   79 77
Adineta_vaga 77 77
Octopus_bimaculoides_280 41 41
Crassostrea_gigas_22   (Pacific oyster)   48 47
Lottia_gigantea_   (Owl limpet)   34 34
Helobdella_robusta_ 36 36
Capitella_sp._I_ 37 37
Danaus_plexippus_OGS1.0   (Monarch butterfly)   31 31
Heliconius_melpomene_   (Postman butterfly)   29 28
Bombyx_mori_   (Domestic silkworm)   30 28
Nasonia_vitripennis_   (Jewel wasp)   40 39
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   37 37
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   29 28
Linepithema_humile_v1.1   (Argentine ant)   31 31
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   30 30
Solenopsis_invicta_v.2.2.3   (Red fire ant)   27 26
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   30 30
Atta_cephalotes_v1.1 31 30
Camponotus_floridanus_v3.3   (Florida carpenter ant)   30 30
Lucilia_cuprina   (Australian sheep blowfly)   32 28
Drosophila_grimshawi_1.3 34 33
Drosophila_willistoni_1.3 35 34
Drosophila_pseudoobscura_2.13 33 32
Drosophila_persimilis_1.3 34 33
Drosophila_suzukii 38 33
Drosophila_yakuba_1.3 32 32
Drosophila_simulans_1.3 28 27
Drosophila_sechellia_1.3 31 31
Drosophila_melanogaster_76_5   (Fruit fly)   67 67
Drosophila_erecta_1.3 32 32
Drosophila_ananassae_1.3 35 34
Drosophila_virilis_1.2 34 33
Drosophila_mojavensis_1.3 32 32
Megaselia_scalaris_22 16 16
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   40 40
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   111 109
Anopheles_darlingi_22   (American malaria mosquito)   29 29
Anopheles_gambiae_49_3j   (African malaria mosquito)   47 47
Tribolium_castaneum_3.0   (Red flour beetle)   41 39
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   29 29
Acyrthosiphon_pisum_   (Pea aphid)   31 31
Rhodnius_prolixus_22 21 21
Daphnia_pulex_   (Common water flea)   37 37
Strigamia_maritima_22 34 33
Sarcoptes_scabiei 19 19
Tetranychus_urticae_   (Two-spotted spider mite)   24 24
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   19 19
Pristionchus_pacificus_ 62 60
Meloidogyne_incognita_   (Southern root-knot nematode)   23 23
Meloidogyne_hapla_ 12 12
Onchocerca_volvulus_22 19 19
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   28 28
Caenorhabditis_japonica_ 25 25
Caenorhabditis_brenneri_ 102 100
Caenorhabditis_remanei_ 94 86
Caenorhabditis_elegans_76_235   (Roundworm)   47 47
Caenorhabditis_briggsae_2 69 67
Trichinella_spiralis_22 14 14
Hymenolepis_microstoma_ 32 32
Echinococcus_multilocularis_ 21 21
Echinococcus_granulosus_ 21 21
Taenia_solium_   (Pork tapeworm)   20 20
Schistosoma_mansoni_ 25 25
Mnemiopsis_leidyi   (Sea walnut)   28 28
Thelohanellus_kitauei 7 7
Acropora_digitifera_v1.0 42 38
Nematostella_vectensis_1.0   (Starlet sea anemone)   40 40
Hydra_vulgaris 30 30
Amphimedon_queenslandica 27 26
Trichoplax_adhaerens_ 18 18
Proterospongia_sp._ATCC_50818_ 23 21
Monosiga_brevicollis_ 23 22
Sphaeroforma_arctica_JP610_ 42 41
Capsaspora_owczarzaki_ATCC_30864_ 35 31
Conidiobolus_coronatus_NRRL28638_v1.0 16 15
Mortierella_verticillata_NRRL_6337_ 35 32
Phycomyces_blakesleeanus_ 29 28
Rhizopus_oryzae_RA_99-880_ 32 31
Mucor_circinelloides_ 29 26
Rhizomucor_miehei_CAU432_ 27 26
Malassezia_globosa_CBS_7966_ 20 20
Sporisorium_reilianum_22 18 16
Ustilago_maydis_ 16 15
Mixia_osmundae_IAM_14324_v1.0 19 19
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 22 22
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 30 30
Melampsora_laricis-populina_ 27 27
Rhodotorula_graminis_WP1_v1.0 25 23
Sporobolomyces_roseus_IAM_13481_ 13 13
Microbotryum_violaceum_22 22 20
Wallemia_sebi_v1.0 13 13
Sphaerobolus_stellatus_v1.0 38 38
Piloderma_croceum_F_1598_v1.0 33 33
Serpula_lacrymans_var._lacrymans_S7.9_ 21 19
Coniophora_puteana 18 17
Hydnomerulius_pinastri_v2.0 23 23
Paxillus_rubicundulus_Ve08.2h10_v1.0 19 19
Pisolithus_microcarpus_441_v1.0 16 16
Pisolithus_tinctorius_Marx_270_v1.0 20 20
Scleroderma_citrinum_Foug_A_v1.0 18 18
Coprinopsis_cinerea_okayama7_130_v3 28 28
Pleurotus_ostreatus_   (Oyster mushroom)   28 28
Amanita_thiersii_Skay4041_v1.0 20 20
Amanita_muscaria_Koide_v1.0   (Fly agaric)   19 19
Galerina_marginata_v1.0 46 46
Hebeloma_cylindrosporum_h7_v2.0 32 32
Laccaria_bicolor_S238N-H82_ 39 39
Agaricus_bisporus_var._bisporus_ 23 23
Schizophyllum_commune_ 34 34
Stereum_hirsutum_FP-91666_SS1__v1.0 30 30
Heterobasidion_annosum_ 23 23
Gloeophyllum_trabeumv1.0 22 20
Punctularia_strigosozonata_v1.0 21 21
Sebacina_vermifera_MAFF_305830_v1.0 31 31
Fomitiporia_mediterranea_v1.0 23 23
Tulasnella_calospora_AL13/4D_v1.0 24 24
Postia_placenta_ 34 34
Wolfiporia_cocos_MD-104_SS10__v1.0 23 23
Fomitopsis_pinicolav1.0 24 23
Fomitopsis_pinicola_FP-58527_SS1_v3.0 24 23
Phanerochaete_chrysosporium_RP-78_2.1 17 17
Dichomitus_squalens 23 23
Trametes_versicolor_v1.0 24 24
Tremella_mesenterica_   (Witches' butter)   19 18
Daldinia_eschscholzii_EC12_v1.0 27 27
Apiospora_montagnei_NRRL_25634_v1.0 45 45
Magnaporthe_poae_ATCC_64411_22 32 32
Magnaporthe_grisea_70-15_ 33 33
Podospora_anserina_ 33 32
Sporotrichum_thermophile_ATCC_42464_ 26 26
Thielavia_terrestris_NRRL_8126_ 27 27
Chaetomium_globosum_CBS_148.51_ 33 33
Neurospora_tetrasperma_ 24 24
Neurospora_discreta_FGSC_8579_ 23 23
Neurospora_crassa_OR74A_ 25 25
Cryphonectria_parasitica_   (Chestnut blight fungus)   31 31
Verticillium_albo-atrum_VaMs.102_ 22 22
Verticillium_dahliae_VdLs.17_ 24 24
Acremonium_alcalophilumv_1.0 20 20
Glomerella_graminicola_22 26 26
Fusarium_graminearum_ 25 25
Nectria_haematococca_mpVI_ 26 26
Fusarium_oxysporum_f._sp._lycopersici_4286_ 23 23
Fusarium_verticillioides_7600_ 22 22
Trichoderma_asperellum_CBS_433.97_v1.0 24 24
Trichoderma_atroviride_ 24 24
Trichoderma_citrinoviride_v1.0 19 19
Trichoderma_reesei_1.2 20 20
Trichoderma_virens_Gv29-8_ 21 21
Trichoderma_longibrachiatum_ATCC_18648_v1.0 19 19
Trichoderma_harzianum_CBS_226.95_v1.0 22 22
Amorphotheca_resinae_v1.0   (Creosote fungus)   25 24
Botrytis_cinerea_B05.10_ 26 26
Sclerotinia_sclerotiorum_ 25 25
Blumeria_graminis_22 14 14
Didymella_exigua_CBS_183.55_v1.0 27 27
Leptosphaeria_maculans_22 26 26
Setosphaeria_turcica_v1.0 26 26
Cochliobolus_miyabeanus_ATCC_44560_v1.0 28 27
Cochliobolus_victoriae_FI3_v1.0 28 28
Cochliobolus_carbonum_26-R-13_v1.0 29 29
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   26 26
Alternaria_brassicicola_ 32 32
Cochliobolus_lunatus_m118_v2.0 26 26
Pyrenophora_teres_f._teres_22 30 30
Pyrenophora_tritici-repentis_ 30 30
Stagonospora_nodorum_ 32 32
Mycosphaerella_graminicola_IPO323_ 27 27
Zasmidium_cellare_ATCC_36951_v1.0 35 35
Dothistroma_septosporum 29 29
Septoria_musiva_v1.0 27 27
Mycosphaerella_fijiensis_CIRAD86_ 27 27
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 28 26
Paracoccidioides_brasiliensis_Pb18_ 14 14
Coccidioides_posadasii_RMSCC_3488_ 18 18
Coccidioides_immitis_RS_ 19 19
Ajellomyces_dermatitidis_SLH14081_ 17 17
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 15 14
Microsporum_canis_CBS_113480_ 17 17
Trichophyton_equinum_CBS_127.97_ 14 14
Trichophyton_verrucosum_HKI_0517_ 16 16
Arthroderma_benhamiae_CBS_112371_ 16 16
Trichophyton_tonsurans_CBS_112818_ 16 16
Trichophyton_rubrum_CBS_118892_ 16 16
Uncinocarpus_reesii_1704_ 20 20
Aspergillus_zonatus_v1.0 18 18
Penicillium_chrysogenum_Wisconsin_54-1255_ 20 20
Penicillium_chrysogenum_v1.0 20 20
Aspergillus_acidus_v1.0 20 20
Aspergillus_fumigatus_Af293 18 18
Aspergillus_brasiliensis_v1.0 19 19
Aspergillus_nidulans_FGSC_A4_ 21 20
Aspergillus_sydowii_v1.0 20 20
Aspergillus_versicolor_v1.0 24 24
Aspergillus_glaucus 24 24
Aspergillus_carbonarius_ITEM_5010_ 18 18
Neosartorya_fischeri_NRRL_181_ 19 19
Aspergillus_terreus_NIH2624_ 20 20
Aspergillus_tubingensis_v1.0 20 20
Aspergillus_wentii_v1.0 20 20
Aspergillus_oryzae_RIB40_ 14 14
Aspergillus_niger_22 20 20
Aspergillus_niger_ATCC_1015_ 18 18
Aspergillus_flavus_NRRL3357_ 17 17
Aspergillus_clavatus_NRRL_1_ 18 18
Penicillium_marneffei_ATCC_18224_ 14 14
Tuber_melanosporum_Mel28_22 13 13
Tuber_melanosporum_Vittad_   (Perigord truffle)   18 18
Hansenula_polymorpha_v2.0 9 9
Dekkera_bruxellensis_CBS_2499_v2.0 11 10
Pichia_membranifaciensv1.0 10 9
Candida_tanzawaensis_NRRL_Y-17324__v1.0 11 10
Candida_dubliniensis_CD36_ 12 11
Candida_tropicalis_MYA-3404_ 12 11
Candida_parapsilosis_ 12 10
Candida_albicans_SC5314 12 11
Lodderomyces_elongisporus_NRRL_YB-4239_ 10 9
Babjeviella_inositovora_NRRL_Y-12698_v1.0 12 11
Pichia_stipitis_CBS_6054_ 12 11
Candida_guilliermondii_ATCC_6260_ 13 11
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 13 12
Debaromyces_hansenii 14 13
Wickerhamomyces_anomalus 14 13
Pichia_pastoris_GS115_ 12 11
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 7 6
Yarrowia_lipolytica_CLIB122 15 14
Candida_lusitaniae_ATCC_42720_ 11 10
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 11 10
Vanderwaltozyma_polyspora_DSM_70294_ 12 11
Candida_glabrata_CBS138 13 12
Kluyveromyces_thermotolerans_CBS_6340 12 11
Lachancea_kluyveri_ 11 10
Kluyveromyces_waltii 11 10
Ashbya_gossypii_ATCC_10895_ 12 11
Zygosaccharomyces_rouxii_ 12 11
Saccharomyces_mikatae_MIT 12 11
Saccharomyces_paradoxus_MIT 13 12
Saccharomyces_cerevisiae_76   (Baker's yeast)   14 12
Saccharomyces_bayanus_MIT 15 13
Kluyveromyces_lactis 12 11
Schizosaccharomyces_cryophilus_OY26_22 13 13
Schizosaccharomyces_octosporus_yFS286_ 13 13
Schizosaccharomyces_japonicus_yFS275_ 13 13
Schizosaccharomyces_pombe   (Fission yeast)   13 13
Catenaria_anguillulae_PL171_v1.0 28 28
Allomyces_macrogynus_ATCC_38327_ 42 42
Spizellomyces_punctatus_DAOM_BR117_ 30 29
Dictyostelium_discoideum 33 32
Dictyostelium_purpureum_ 27 26
Entamoeba_dispar_1.2 7 7
Entamoeba_invadens_1.2 5 5
Entamoeba_histolytica_1 5 5
Selaginella_moellendorffii_ 118 118
Pinus_taeda   (Loblolly pine)   44 41
Picea_abies   (Norway spruce)   29 29
Eucalyptus_grandis_v201   (Rose gum)   84 84
Theobroma_cacao_B97-61/B2_v1   (Cacao)   50 50
Gossypium_raimondii_v221 175 170
Citrus_clementina_v165 87 86
Citrus_sinensis_v154   (Sweet orange)   114 113
Thellungiella_halophila_v173 66 65
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   67 66
Capsella_rubella_v183 60 58
Arabidopsis_lyrata_   (Lyrate rockcress)   52 51
Arabidopsis_thaliana_10   (Thale cress)   71 70
Carica_papaya_   (Papaya)   40 40
Medicago_truncatula_   (Barrel medic)   128 128
Phaseolus_vulgaris_v186   (French bean)   70 69
Glycine_max_v109   (Soybean)   107 105
Cucumis_sativus_v122   (Cucumber)   66 65
Fragaria_vesca_   (Wild strawberry)   53 53
Malus_domestica_v196   (Apple)   91 88
Prunus_persica_v139   (Peach)   48 46
Linum_usitatissimum_v200   (Flax)   79 79
Manihot_esculenta_v147   (Cassava)   51 51
Populus_trichocarpa_v156   (Black cottonwood)   76 76
Vitis_vinifera_   (Wine grape)   48 47
Mimulus_guttatus_v140   (Spotted monkey flower)   69 68
Solanum_lycopersicum_v.2.3   (Tomato)   63 63
Solanum_tuberosum_   (Potato)   89 89
Actinidia_chinensis_Hongyang_ 63 62
Aquilegia_coerulea_v195 101 100
Triticum_urartu_22 48 46
Triticum_aestivum_22   (Bread wheat)   171 170
Aegilops_tauschii_22 59 58
Brachypodium_distachyon_   (Stiff brome)   65 65
Oryza_barthii_22   (African wild rice)   76 76
Oryza_meridionalis_22 72 70
Oryza_glumaepatula_22 87 87
Oryza_glaberrima   (African rice)   42 42
Oryza_punctata_22 91 91
Oryza_nivara_22 72 72
Oryza_brachyantha_22   (Malo sina)   48 48
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   56 56
Oryza_sativa_v193   (Rice)   54 54
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   71 71
Panicum_virgatum_v202   (Switchgrass)   107 107
Setaria_italica_v164   (Foxtail millet)   64 64
Zea_mays_subsp._mays_   (Maize)   104 103
Zea_mays_v181   (Maize)   123 122
Sorghum_bicolor_   (Sorghum)   53 53
Musa_balbisiana   (Balbis banana)   50 48
Musa_acuminata_22   (Wild Malaysian banana)   44 44
Amborella_trichopoda_22 42 41
Physcomitrella_patens 56 54
Coccomyxa_subellipsoidea_sp._C-169_v2 47 46
Asterochloris_sp._Cgr/DA1pho_v1.0 28 27
Chlorella_variabilis_sp._NC64A_ 37 33
Chlorella_vulgaris_ 45 44
Volvox_carteri_f._nagariensis_ 56 53
Volvox_carteri_v199 54 51
Chlamydomonas_reinhardtii_4.0 71 68
Ostreococcus_sp._RCC809_ 44 43
Ostreococcus_lucimarinus_CCE9901_ 44 43
Ostreococcus_tauri_ 41 41
Bathycoccus_prasinos_ 38 37
Micromonas_sp._RCC299_ 60 57
Micromonas_pusilla_CCMP1545_v3.0 71 69
Cyanidioschyzon_merolae_strain_10D_22 10 10
Cyanidioschyzon_merolae 9 9
Porphyridium_purpureum_02_2012 19 19
Thecamonas_trahens_ATCC_50062_ 15 14
Bigelowiella_natans_CCMP2755_22 77 75
Giardia_lamblia_2.3 7 7
Cyanophora_paradoxa_ 63 63
Leishmania_mexicana_2.4 47 39
Leishmania_major_strain_Friedlin_ 47 39
Leishmania_infantum_JPCM5_2.4 46 38
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 46 39
Trypanosoma_vivax_ 41 35
Trypanosoma_cruzi_strain_CL_Brener 41 35
Trypanosoma_congolense_2.4 45 43
Trypanosoma_brucei_gambiense_v4.1 43 38
Trypanosoma_brucei_TREU927_v4.1 43 38
Ectocarpus_siliculosus 60 58
Aureococcus_anophagefferens_ 44 43
Albugo_laibachii_22 19 19
Pythium_iwayamai_DAOM_BR242034_22 28 27
Pythium_arrhenomanes_ATCC_12531_22 60 58
Pythium_ultimum_v1.7-2 32 31
Pythium_aphanidermatum_DAOM_BR444_22 29 29
Pythium_irregulare_DAOM_BR486_22 36 35
Pythium_vexans_DAOM_BR484_22 29 28
Phytophthora_ramorum_1.1   (Sudden oak death agent)   50 48
Phytophthora_sojae_1.1 67 65
Phytophthora_infestans_T30-4_ 129 128
Phytophthora_capsici_ 77 75
Hyaloperonospora_arabidopsidis_22 26 26
Phaeodactylum_tricornutumCCAP_1055/1 61 52
Fragilariopsis_cylindrus 157 151
Thalassiosira_pseudonana_CCMP1335 75 70
Perkinsus_marinus_ATCC_50983_ 42 42
Paramecium_tetraurelia_ 55 47
Tetrahymena_thermophila_SB210_1_ 27 23
Ichthyophthirius_multifiliis_strain_G5_ 17 16
Cryptosporidium_hominis 9 9
Cryptosporidium_muris 11 11
Cryptosporidium_parvum_Iowa_II 13 13
Neospora_caninum 22 21
Toxoplasma_gondii_VEG 21 20
Toxoplasma_gondii_ME49 21 20
Toxoplasma_gondii_GT1 20 19
Babesia_bovis_T2Bo_ 14 14
Theileria_parva__ 6 6
Theileria_annulata 7 7
Plasmodium_falciparum_3D7_ 11 11
Plasmodium_vivax_SaI-1_7.0 12 11
Plasmodium_knowlesi_strain_H_ 12 11
Plasmodium_yoelii_ssp._yoelii_1_ 10 10
Plasmodium_chabaudi_ 10 10
Plasmodium_berghei_ANKA_ 10 10
Symbiodinium_minutum_clade_B1_v1.2 185 181
Naegleria_gruberi_ 16 14
Trichomonas_vaginalis_ 14 14
Guillardia_theta_CCMP2712_v1.0_ 89 89
Emiliania_huxleyi_CCMP1516_ 132 128
Leptolyngbya_sp._PCC_7376 2 2
Gloeocapsa_sp._PCC_7428 1 1
Rivularia_sp._PCC_7116 1 1
'Nostoc_azollae'_0708 4 4
Nostoc_punctiforme_PCC_73102 1 1
Anabaena_sp._90 1 1
Ilumatobacter_coccineus 3 3
Streptomyces_bingchenggensis_BCW-1 1 1
Amycolatopsis_mediterranei_U32 1 1
Kribbella_flavida_DSM_17836 1 1
Mycobacterium_sp._JLS 1 1
Anaerolinea_thermophila_UNI-1 1 1
Herpetosiphon_aurantiacus_DSM_785 1 1
Desulfotomaculum_acetoxidans_DSM_771 1 1
Brevibacillus_brevis_NBRC_100599 2 2
Paenibacillus_mucilaginosus_3016 1 1
Solibacillus_silvestris_StLB046 2 2
Halobacillus_halophilus_DSM_2266 1 1
Bacillus_sp._1NLA3E 1 1
Bacillus_weihenstephanensis_KBAB4 1 1
Bacillus_thuringiensis_str._Al_Hakam 1 1
Bacillus_cereus_03BB102 1 1
Bacillus_anthracis_str._A0248 1 1
Bacillus_pseudofirmus_OF4 1 1
Bacillus_cellulosilyticus_DSM_2522 1 1
Bacillus_megaterium_DSM_319 1 1
Gemmatimonas_aurantiaca_T-27 2 2
Ignavibacterium_album_JCM_16511 1 1
Pelodictyon_phaeoclathratiforme_BU-1 1 1
Chlorobium_luteolum_DSM_273 1 1
Chlorobium_chlorochromatii_CaD3 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Chlorobium_phaeovibrioides_DSM_265 1 1
Chlorobium_limicola_DSM_245 1 1
Chlorobaculum_parvum_NCIB_8327 1 1
Chlorobium_tepidum_TLS 1 1
Prosthecochloris_aestuarii_DSM_271 1 1
Haliscomenobacter_hydrossis_DSM_1100 1 1
Saprospira_grandis_str._Lewin 1 1
Niastella_koreensis_GR20-10 2 2
Chitinophaga_pinensis_DSM_2588 1 1
Cytophaga_hutchinsonii_ATCC_33406 2 2
Fluviicola_taffensis_DSM_16823 1 1
Owenweeksia_hongkongensis_DSM_17368 1 1
Gramella_forsetii_KT0803 1 1
Flavobacterium_johnsoniae_UW101 1 1
Waddlia_chondrophila_WSU_86-1044 1 1
Parachlamydia_acanthamoebae_UV-7 1 1
Simkania_negevensis_Z 2 2
Chlamydophila_pecorum_E58 1 1
Chlamydia_muridarum_Nigg 1 1
Chlamydophila_pneumoniae_TW-183 1 1
Chlamydophila_caviae_GPIC 1 1
Chlamydophila_felis_Fe/C-56 1 1
Chlamydophila_abortus_S26/3 1 1
Chlamydia_psittaci_01DC11 1 1
Chlamydia_trachomatis_B/Jali20/OT 1 1
Planctomyces_limnophilus_DSM_3776 1 1
Rhodopirellula_baltica_SH_1 1 1
Coraliomargarita_akajimensis_DSM_45221 2 2
Opitutus_terrae_PB90-1 1 1
Turneriella_parva_DSM_21527 4 4
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 3 3
Leptospira_interrogans_serovar_Lai_str._IPAV 4 4
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Spirochaeta_smaragdinae_DSM_11293 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Granulicella_tundricola_MP5ACTX9 1 1
Granulicella_mallensis_MP5ACTX8 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Terriglobus_saanensis_SP1PR4 1 1
Terriglobus_roseus_DSM_18391 2 2
Acidobacterium_capsulatum_ATCC_51196 1 1
Acidithiobacillus_caldus_SM-1 1 1
Bacteriovorax_marinus_SJ 2 2
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfococcus_oleovorans_Hxd3 1 1
Desulfovibrio_piezophilus 2 2
Desulfovibrio_aespoeensis_Aspo-2 1 1
Geobacter_uraniireducens_Rf4 1 1
Haliangium_ochraceum_DSM_14365 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 3 3
Myxococcus_xanthus_DK_1622 2 2
Myxococcus_fulvus_HW-1 2 2
beta_proteobacterium_CB 1 1
Methylibium_petroleiphilum_PM1 2 2
Thiomonas_arsenitoxydans 1 1
Thiomonas_intermedia_K12 1 1
Rubrivivax_gelatinosus_IL144 3 3
Leptothrix_cholodnii_SP-6 2 2
Burkholderia_rhizoxinica_HKI_454 1 1
Burkholderia_phytofirmans_PsJN 2 2
Burkholderia_phymatum_STM815 3 3
Burkholderia_xenovorans_LB400 3 3
Ralstonia_eutropha_JMP134 1 1
Cupriavidus_taiwanensis_LMG_19424 1 1
Cupriavidus_metallidurans_CH34 1 1
Cupriavidus_necator_N-1 1 1
Ralstonia_eutropha_H16 1 1
Ralstonia_pickettii_12D 1 1
Ralstonia_solanacearum_CFBP2957 2 2
Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1 1 1
Burkholderia_sp._RPE64 2 2
Burkholderia_sp._CCGE1002 3 3
Burkholderia_thailandensis_E264 2 2
Burkholderia_pseudomallei_1106a 2 2
Burkholderia_mallei_SAVP1 1 1
Burkholderia_ambifaria_AMMD 1 1
Burkholderia_cenocepacia_HI2424 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 2 2
Burkholderia_gladioli_BSR3 1 1
Burkholderia_glumae_BGR1 1 1
Verminephrobacter_eiseniae_EF01-2 1 1
Alicycliphilus_denitrificans_K601 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 1 1
Polaromonas_sp._JS666 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 2 2
Rhodoferax_ferrireducens_T118 1 1
Acidovorax_ebreus_TPSY 1 1
Acidovorax_sp._KKS102 1 1
Acidovorax_sp._JS42 1 1
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Comamonas_testosteroni_CNB-2 1 1
Herminiimonas_arsenicoxydans 2 2
Collimonas_fungivorans_Ter331 1 1
Janthinobacterium_sp._Marseille 1 1
Pusillimonas_sp._T7-7 1 1
Advenella_kashmirensis_WT001 1 1
Bordetella_petrii_DSM_12804 1 1
Bordetella_avium_197N 1 1
Bordetella_pertussis_Tohama_I 1 1
Bordetella_parapertussis_12822 1 1
Bordetella_bronchiseptica_RB50 1 1
Achromobacter_xylosoxidans_A8 1 1
Achromobacter_xylosoxidans 1 1
Sphingomonas_wittichii_RW1 1 1
Maricaulis_maris_MCS10 2 2
Hirschia_baltica_ATCC_49814 1 1
Hyphomonas_neptunium_ATCC_15444 1 1
Ruegeria_pomeroyi_DSS-3 1 1
Rhodobacter_capsulatus_SB_1003 1 1
Rhodospirillum_centenum_SW 1 1
Azospirillum_brasilense_Sp245 1 1
Candidatus_Puniceispirillum_marinum_IMCC1322 1 1
alpha_proteobacterium_HIMB5 1 1
alpha_proteobacterium_HIMB59 1 1
Mesorhizobium_opportunistum_WSM2075 2 2
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 2 2
Mesorhizobium_loti_MAFF303099 2 2
Rhodomicrobium_vannielii_ATCC_17100 1 1
Hyphomicrobium_sp._MC1 3 3
Hyphomicrobium_denitrificans_ATCC_51888 3 3
Oligotropha_carboxidovorans_OM4 1 1
Rhodopseudomonas_palustris_BisA53 1 1
Nitrobacter_winogradskyi_Nb-255 1 1
Nitrobacter_hamburgensis_X14 1 1
Bradyrhizobium_japonicum_USDA_110 2 2
Bradyrhizobium_sp._ORS_278 1 1
Ferrimonas_balearica_DSM_9799 1 1
Alcanivorax_borkumensis_SK2 1 1
Rhodanobacter_denitrificans 2 2
Frateuria_aurantia_DSM_6220 2 2
Pseudoxanthomonas_spadix_BD-a59 1 1
Pseudoxanthomonas_suwonensis_11-1 1 1
Stenotrophomonas_maltophilia_K279a 1 1
Xylella_fastidiosa_M23 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_albilineans_GPE_PC73 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1 1
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Allochromatium_vinosum_DSM_180 1 1
Thiocystis_violascens_DSM_198 1 1
Legionella_pneumophila_str._Corby 1 1
gamma_proteobacterium_HdN1 1 1
Pantoea_sp._At-9b 1 1
Salmonella_bongori_NCTC_12419 2 2
Pseudomonas_sp._TKP 1 1
Pseudomonas_sp._UW4 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_fluorescens_SBW25 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanoregula_boonei_6A8 1 1
Methanoculleus_marisnigri_JR1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   84 84
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   53 53
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   47 47
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   19 19
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   44 44
Cryptococcus_neoformans_var._grubii_H99_ 22 22
Cryptococcus_neoformans_B-3501A_ 19 19
Cryptococcus_neoformans_JEC21_ 14 14
Paracoccidioides_brasiliensis_Pb01_ 15 15
Paracoccidioides_brasiliensis_Pb03_ 13 13
Coccidioides_posadasii_str._Silveira_ 18 18
Coccidioides_immitis_RMSCC_3703_ 18 18
Coccidioides_immitis_RMSCC_2394_ 18 18
Coccidioides_immitis_H538.4_ 17 17
Ajellomyces_dermatitidis_ER-3_ 17 17
Histoplasma_capsulatum_H143 17 16
Histoplasma_capsulatum_H88 19 18
Histoplasma_capsulatum_G186AR 19 18
Aspergillus_fumigatus_A1163_ 19 19
Candida_albicans_WO-1_ 12 11
Saccharomyces_cerevisiae_UC5 12 11
Saccharomyces_cerevisiae_PW5 11 10
Saccharomyces_cerevisiae_FL100 7 7
Saccharomyces_cerevisiae_CLIB324 9 7
Saccharomyces_cerevisiae_CBS7960 13 11
Saccharomyces_cerevisiae_YJM269 9 8
Saccharomyces_cerevisiae_T7 13 12
Saccharomyces_cerevisiae_FostersB 10 9
Saccharomyces_cerevisiae_FostersO 11 10
Saccharomyces_cerevisiae_VL3 12 11
Saccharomyces_cerevisiae_Vin13 10 10
Saccharomyces_cerevisiae_LalvinQA23 13 12
Saccharomyces_cerevisiae_AWRI796 13 12
Saccharomyces_cerevisiae_Sigma1278b 14 12
Saccharomyces_cerevisiae_W303 14 12
Saccharomyces_cerevisiae_JAY291 13 12
Saccharomyces_cerevisiae_AWRI1631 8 8
Saccharomyces_cerevisiae_YPS163 2 2
Saccharomyces_cerevisiae_M22 3 3
Saccharomyces_cerevisiae_T73 8 7
Saccharomyces_cerevisiae_CLIB215 9 8
Saccharomyces_cerevisiae_Y10 2 2
Saccharomyces_cerevisiae_YJM789_ 13 12
Saccharomyces_cerevisiae_YJM789 13 12
Saccharomyces_cerevisiae_RM11-1a 13 12
Saccharomyces_cerevisiae_RM11-1a_ 12 11
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   14 12
Schizosaccharomyces_pombe_972h-_ 13 13
Batrachochytrium_dendrobatidis_JEL423_ 17 16
Batrachochytrium_dendrobatidis_JAM81_ 19 18
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   47 46
Hordeum_vulgare_22   (Domesticated barley)   156 153
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   50 49
Trypanosoma_brucei_Lister_427_v4.1 43 38
Neospora_caninum_Nc-Liverpool_6.2 22 21
Plasmodium_falciparum_HB3_ 10 10
Plasmodium_falciparum_Dd2_ 10 10
Chroococcidiopsis_thermalis_PCC_7203 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 4 4
Cylindrospermum_stagnale_PCC_7417 2 2
Anabaena_cylindrica_PCC_7122 2 2
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Actinoplanes_friuliensis_DSM_7358 1 1
Nocardia_brasiliensis_ATCC_700358 1 1
Paenibacillus_mucilaginosus_KNP414 1 1
Paenibacillus_mucilaginosus_K02 1 1
Bacillus_infantis_NRRL_B-14911 1 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1 1
Bacillus_toyonensis_BCT-7112 1 1
Bacillus_thuringiensis_HD-771 1 1
Bacillus_thuringiensis_HD-789 1 1
Bacillus_thuringiensis_MC28 1 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1 1
Bacillus_thuringiensis_YBT-1518 1 1
Bacillus_thuringiensis_Bt407 1 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1 1
Bacillus_thuringiensis_BMB171 1 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1 1
Bacillus_cereus_FRI-35 1 1
Bacillus_cereus_biovar_anthracis_str._CI 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_AH187 1 1
Bacillus_cereus_B4264 1 1
Bacillus_cereus_G9842 1 1
Bacillus_cereus_Q1 1 1
Bacillus_cereus_F837/76 1 1
Bacillus_cereus_NC7401 1 1
Bacillus_cereus_E33L 1 1
Bacillus_cereus_ATCC_14579 1 1
Bacillus_cereus_ATCC_10987 1 1
Bacillus_anthracis_str._H9401 1 1
Bacillus_anthracis_str._CDC_684 1 1
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._Sterne 1 1
Bacillus_anthracis_str._Ames 1 1
Bacillus_megaterium_WSH-002 3 3
Bacillus_megaterium_QM_B1551 1 1
Chlorobium_phaeobacteroides_BS1 1 1
Chlamydia_pecorum_P787 1 1
Chlamydia_pecorum_W73 1 1
Chlamydia_pecorum_PV3056/3 1 1
Chlamydophila_pneumoniae_LPCoLN 1 1
Chlamydophila_pneumoniae_J138 1 1
Chlamydophila_pneumoniae_CWL029 1 1
Chlamydophila_pneumoniae_AR39 1 1
Chlamydia_psittaci_01DC12 1 1
Chlamydia_psittaci_WC 1 1
Chlamydia_psittaci_M56 1 1
Chlamydia_psittaci_WS/RT/E30 1 1
Chlamydia_psittaci_VS225 1 1
Chlamydia_psittaci_MN 1 1
Chlamydia_psittaci_GR9 1 1
Chlamydia_psittaci_84/55 1 1
Chlamydia_psittaci_08DC60 1 1
Chlamydia_psittaci_02DC15 1 1
Chlamydia_psittaci_C19/98 1 1
Chlamydia_psittaci_NJ1 1 1
Chlamydia_psittaci_CP3 1 1
Chlamydophila_psittaci_RD1 1 1
Chlamydia_psittaci_Mat116 1 1
Chlamydophila_psittaci_6BC 1 1
Chlamydophila_psittaci_6BC 1 1
Chlamydia_trachomatis_C/TW-3 1 1
Chlamydia_trachomatis_L2/434/Bu(f) 1 1
Chlamydia_trachomatis_L2/434/Bu(i) 1 1
Chlamydia_trachomatis_IU888 1 1
Chlamydia_trachomatis_IU824 1 1
Chlamydia_trachomatis_L2b/Canada2 1 1
Chlamydia_trachomatis_L2b/Canada1 1 1
Chlamydia_trachomatis_L3/404/LN 1 1
Chlamydia_trachomatis_L2b/Ams5 1 1
Chlamydia_trachomatis_L2b/Ams4 1 1
Chlamydia_trachomatis_L2b/Ams3 1 1
Chlamydia_trachomatis_L2b/Ams2 1 1
Chlamydia_trachomatis_L2b/Ams1 1 1
Chlamydia_trachomatis_L2b/795 1 1
Chlamydia_trachomatis_L2b/CV204 1 1
Chlamydia_trachomatis_L2b/LST 1 1
Chlamydia_trachomatis_L2b/UCH-2 1 1
Chlamydia_trachomatis_L2b/8200/07 1 1
Chlamydia_trachomatis_L2/25667R 1 1
Chlamydia_trachomatis_L1/224 1 1
Chlamydia_trachomatis_L1/115 1 1
Chlamydia_trachomatis_L1/440/LN 1 1
Chlamydia_trachomatis_K/SotonK1 1 1
Chlamydia_trachomatis_Ia/SotonIa3 1 1
Chlamydia_trachomatis_Ia/SotonIa1 1 1
Chlamydia_trachomatis_G/SotonG1 1 1
Chlamydia_trachomatis_F/SotonF3 1 1
Chlamydia_trachomatis_F/SW5 1 1
Chlamydia_trachomatis_F/SW4 1 1
Chlamydia_trachomatis_E/SotonE8 1 1
Chlamydia_trachomatis_E/SotonE4 1 1
Chlamydia_trachomatis_E/SW3 1 1
Chlamydia_trachomatis_D/SotonD6 1 1
Chlamydia_trachomatis_D/SotonD5 1 1
Chlamydia_trachomatis_D/SotonD1 1 1
Chlamydia_trachomatis_A/5291 1 1
Chlamydia_trachomatis_A/363 1 1
Chlamydia_trachomatis_RC-J/971 1 1
Chlamydia_trachomatis_RC-L2/55 1 1
Chlamydia_trachomatis_J/6276tet1 1 1
Chlamydia_trachomatis_RC-J/966 1 1
Chlamydia_trachomatis_RC-J(s)/122 1 1
Chlamydia_trachomatis_RC-F(s)/342 1 1
Chlamydia_trachomatis_RC-L2(s)/3 1 1
Chlamydia_trachomatis_RC-J/953 1 1
Chlamydia_trachomatis_RC-J943 1 1
Chlamydia_trachomatis_RC-Fs852 1 1
Chlamydia_trachomatis_RC-L2s46 1 1
Chlamydia_trachomatis_RC-F69 1 1
Chlamydia_trachomatis_L2c 1 1
Chlamydia_trachomatis_D-LC 1 1
Chlamydia_trachomatis_D-EC 1 1
Chlamydia_trachomatis_G/9301 1 1
Chlamydia_trachomatis_G/11074 1 1
Chlamydia_trachomatis_G/11222 1 1
Chlamydia_trachomatis_G/9768 1 1
Chlamydia_trachomatis_E/150 1 1
Chlamydia_trachomatis_E/11023 1 1
Chlamydia_trachomatis_B/TZ1A828/OT 1 1
Chlamydia_trachomatis_Sweden2 1 1
Chlamydia_trachomatis_E/Bour 1 1
Chlamydia_trachomatis_A2497 1 1
Chlamydia_trachomatis_A2497 1 1
Chlamydia_trachomatis_L2b/UCH-1/proctitis 1 1
Chlamydia_trachomatis_434/Bu 1 1
Chlamydia_trachomatis_A/HAR-13 1 1
Chlamydia_trachomatis_D/UW-3/CX 1 1
Singulisphaera_acidiphila_DSM_18658 1 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 3 3
Leptospira_interrogans_serovar_Lai_str._56601 4 4
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 4 4
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Desulfocapsa_sulfexigens_DSM_10523 1 1
Desulfovibrio_desulfuricans_ND132 2 2
Sorangium_cellulosum_So0157-2 1 1
Myxococcus_stipitatus_DSM_14675 2 2
Burkholderia_phenoliruptrix_BR3459a 3 3
Pandoraea_pnomenusa_3kgm 2 2
Ralstonia_pickettii_12J 1 1
Ralstonia_solanacearum_FQY_4 2 2
Ralstonia_solanacearum_Po82 2 2
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 2 2
Polynucleobacter_necessarius_subsp._necessarius_STIR1 1 1
Burkholderia_sp._YI23 4 4
Burkholderia_sp._CCGE1003 1 1
Burkholderia_sp._CCGE1001 1 1
Burkholderia_sp._KJ006 1 1
Burkholderia_thailandensis_MSMB121 2 2
Burkholderia_pseudomallei_MSHR305 2 2
Burkholderia_pseudomallei_NCTC_13179 2 2
Burkholderia_pseudomallei_BPC006 2 2
Burkholderia_pseudomallei_1026b 2 2
Burkholderia_pseudomallei_MSHR346 1 1
Burkholderia_pseudomallei_668 2 2
Burkholderia_pseudomallei_1710b 2 2
Burkholderia_pseudomallei_K96243 2 2
Burkholderia_mallei_NCTC_10229 2 2
Burkholderia_mallei_NCTC_10247 2 2
Burkholderia_mallei_ATCC_23344 2 2
Burkholderia_lata 1 1
Burkholderia_ambifaria_MC40-6 1 1
Burkholderia_cenocepacia_MC0-3 1 1
Burkholderia_cenocepacia_AU_1054 1 1
Burkholderia_cenocepacia_J2315 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_cepacia_GG4 1 1
Alicycliphilus_denitrificans_BC 1 1
Variovorax_paradoxus_B4 2 2
Variovorax_paradoxus_EPS 2 2
Bordetella_pertussis_CS 1 1
Bordetella_parapertussis_18323 1 1
Bordetella_parapertussis_Bpp5 1 1
Bordetella_bronchiseptica_MO149 1 1
Bordetella_bronchiseptica_253 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 2 2
Candidatus_Pelagibacter_ubique_HTCC1062 1 1
Mesorhizobium_australicum_WSM2073 2 2
Hyphomicrobium_denitrificans_1NES1 2 2
Oligotropha_carboxidovorans_OM5 1 1
Oligotropha_carboxidovorans_OM5 1 1
Rhodopseudomonas_palustris_DX-1 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_HaA2 1 1
Rhodopseudomonas_palustris_BisB5 1 1
Rhodopseudomonas_palustris_BisB18 1 1
Rhodopseudomonas_palustris_CGA009 1 1
Bradyrhizobium_sp._S23321 1 1
Bradyrhizobium_sp._BTAi1 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Bradyrhizobium_japonicum_USDA_6 2 2
Alcanivorax_dieselolei_B5 1 1
Stenotrophomonas_maltophilia_D457 1 1
Stenotrophomonas_maltophilia_JV3 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1 1
Xylella_fastidiosa_M12 1 1
Xylella_fastidiosa_Temecula1 1 1
Xylella_fastidiosa_9a5c 1 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Legionella_pneumophila_str._Paris 1 1
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1
Salmonella_bongori_N268-08 2 2
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1 1
Pseudomonas_poae_RE*1-1-14 2 2
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_A506 2 2
Pseudomonas_fluorescens_R124 1 1
Pseudomonas_fluorescens_Pf0-1 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   54 54
Pan_troglodytes_69_2.1.4   (Chimpanzee)   43 43
Gorilla_gorilla_69_3.1   (Western gorilla)   50 50
Pongo_abelii_69_2   (Sumatran orangutan)   45 45
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   41 41
Macaca_mulatta_69_1   (Rhesus monkey)   41 41
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   46 46
Otolemur_garnettii_69_3   (Small-eared galago)   48 48
Microcebus_murinus_69_1   (Gray mouse lemur)   38 38
Rattus_norvegicus_69_3.4   (Norway rat)   46 46
Mus_musculus_69_38   (House mouse)   45 45
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   39 38
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   37 37
Cavia_porcellus_69_3   (Domestic guinea pig)   45 45
Oryctolagus_cuniculus_69_2   (Rabbit)   45 45
Ochotona_princeps_69   (American pika)   37 37
Tupaia_belangeri_69   (Northern tree shrew)   34 33
Sus_scrofa_69_10.2   (Pig)   49 49
Bos_taurus_69_3.1   (Cattle)   48 48
Vicugna_pacos_69_1   (Alpaca)   23 23
Tursiops_truncatus_69_1   (Bottlenose dolphin)   44 43
Mustela_putorius_furo_69_1.0   (Domestic ferret)   49 49
Ailuropoda_melanoleuca_69_1   (Giant panda)   48 48
Canis_familiaris_69_3.1   (Dog)   47 47
Felis_catus_69   (Domestic cat)   40 37
Equus_caballus_69_2   (Horse)   46 46
Myotis_lucifugus_69_2.0   (Little brown bat)   43 42
Pteropus_vampyrus_69_1   (Large flying fox)   43 43
Sorex_araneus_69_1   (European shrew)   29 29
Erinaceus_europaeus_69   (Western European hedgehog)   29 28
Procavia_capensis_69_1   (Cape rock hyrax)   40 39
Loxodonta_africana_69_3   (African savanna elephant)   46 46
Echinops_telfairi_69   (Small Madagascar hedgehog)   38 34
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   34 33
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   26 25
Macropus_eugenii_69_1.0   (Tammar wallaby)   38 37
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   43 43
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   42 42
Ornithorhynchus_anatinus_69_5   (Platypus)   44 44
Petromyzon_marinus_69_7.0   (Sea lamprey)   28 28
Meleagris_gallopavo_69_2   (Turkey)   38 38
Gallus_gallus_69_2   (Chicken)   37 37
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   48 48
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   40 40
Anolis_carolinensis_69_2.0   (Green anole)   44 44
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   35 35
Latimeria_chalumnae_69_1   (Coelacanth)   41 41
Gadus_morhua_69_1   (Atlantic cod)   42 42
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   51 51
Takifugu_rubripes_69_4   (Torafugu)   51 51
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   48 48
Oryzias_latipes_69_1   (Japanese medaka)   44 44
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   54 54
Oreochromis_niloticus_69_1.0   (Nile tilapia)   52 52
Danio_rerio_69_9   (Zebrafish)   71 71
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   20 20
Ciona_intestinalis_69   (Vase tunicate)   21 21
Drosophila_melanogaster_69_5   (Fruit fly)   32 32
Caenorhabditis_elegans_69_215   (Roundworm)   36 36
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   14 12
Arabidopsis_thaliana_10   (Thale cress)   50 49

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   210 210
Homo_sapiens__(NCBI_version)   (Human)   76 76
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   44 44
Heliconius_numata__(Incomplete) 10 10
Loa_loa_v3.3_(Request)   (Eye worm)   21 21
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   22 21
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   18 18
Moniliophthora_perniciosa_FA553__(Genome_survey) 16 16
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   3 3
Lotus_japonicus__(Early_assembly) 59 59
Malus_x_domestica_(Duplicate)   (Apple)   91 88
Ricinus_communis__(Early_assembly)   (Castor bean)   44 44
Nicotiana_benthamiana_0.4.4_(Early_draft) 89 86
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   59 59
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   63 63
Phoenix_dactylifera__(Early_draft)   (Date palm)   46 45
Guillardia_theta_(nucleomorph) 2 2
NCBI_plasmid_sequences_(Plasmids) 20 20
NCBI_viral_sequences_(Viral) 28 28
TargetDB__(Targets) 202 196
Protein_Data_Bank_(all_PDB_sequenc) 369 369
Protozoadb_2010_08_(Protozoadb) 586 539
PDB_chains_(SCOP_1.75)_(PDB) 13 13
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 723 723
UniProt__viral_sequences_(Viral) 15 15
STRING_v9.0.5_(STRING) 4262 4162
Uniprot_2018_03_genome 56585 55527
NCBI_2017_08_genome 61771 61273

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