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Domain combinations for GckA/TtuD-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a GckA/TtuD-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   7 7
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_76_3.1   (Western gorilla)   1 1
Pongo_abelii_76_2   (Sumatran orangutan)   2 2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1 1
Papio_anubis_76   (Olive baboon)   1 1
Macaca_mulatta_76_1   (Rhesus monkey)   5 5
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   7 7
Otolemur_garnettii_76_3   (Small-eared galago)   1 1
Microcebus_murinus_76_1   (Gray mouse lemur)   2 1
Rattus_norvegicus_76_5.0   (Norway rat)   1 1
Mus_musculus_76_38   (House mouse)   4 4
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1 1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1 1
Cavia_porcellus_76_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_76_2   (Rabbit)   2 2
Ochotona_princeps_76   (American pika)   1 1
Tupaia_belangeri_76   (Northern tree shrew)   2 1
Sus_scrofa_76_10.2   (Pig)   1 1
Bos_taurus_76_3.1   (Cattle)   1 1
Ovis_aries_76_3.1   (Sheep)   1 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1 1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1 1
Canis_familiaris_76_3.1   (Dog)   2 2
Felis_catus_76_6.2   (Domestic cat)   1 1
Equus_caballus_76_2   (Horse)   1 1
Myotis_lucifugus_76_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_76_1   (Large flying fox)   1 1
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   2 1
Procavia_capensis_76_1   (Cape rock hyrax)   2 1
Loxodonta_africana_76_3   (African savanna elephant)   1 1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1 1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1 1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1 1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1 1
Ornithorhynchus_anatinus_76_5   (Platypus)   1 1
Saccoglossus_kowalevskii_v3.0 1 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_76_2   (Turkey)   1 1
Gallus_gallus_76_4   (Chicken)   1 1
Anas_platyrhynchos_76_1.0   (Mallard)   1 1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1 1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1 1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1 1
Anolis_carolinensis_76_2.0   (Green anole)   1 1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1 1
Latimeria_chalumnae_76_1   (Coelacanth)   1 1
Gadus_morhua_76_1   (Atlantic cod)   1 1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_76_4   (Torafugu)   2 2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1 1
Oryzias_latipes_76_1   (Japanese medaka)   1 1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1 1
Poecilia_formosa_76   (Amazon molly)   1 1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1 1
Astyanax_mexicanus_76   (Mexican tetra)   1 1
Danio_rerio_76_9   (Zebrafish)   4 4
Oikopleura_dioica 2 2
Ciona_intestinalis_76   (Vase tunicate)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1 1
Adineta_vaga 2 2
Octopus_bimaculoides_280 2 2
Crassostrea_gigas_22   (Pacific oyster)   1 1
Lottia_gigantea_   (Owl limpet)   1 1
Helobdella_robusta_ 1 1
Capitella_sp._I_ 3 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Heliconius_melpomene_   (Postman butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   3 3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 2
Linepithema_humile_v1.1   (Argentine ant)   3 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 1
Atta_cephalotes_v1.1 3 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 2
Lucilia_cuprina   (Australian sheep blowfly)   1 1
Drosophila_grimshawi_1.3 1 1
Drosophila_willistoni_1.3 1 1
Drosophila_pseudoobscura_2.13 1 1
Drosophila_persimilis_1.3 1 1
Drosophila_suzukii 1 1
Drosophila_yakuba_1.3 1 1
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 1 1
Drosophila_melanogaster_76_5   (Fruit fly)   1 1
Drosophila_erecta_1.3 1 1
Drosophila_ananassae_1.3 1 1
Drosophila_virilis_1.2 1 1
Drosophila_mojavensis_1.3 1 1
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1 1
Anopheles_darlingi_22   (American malaria mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 1 1
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Pristionchus_pacificus_ 1 1
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Caenorhabditis_japonica_ 4 4
Caenorhabditis_brenneri_ 1 1
Caenorhabditis_remanei_ 4 4
Caenorhabditis_elegans_76_235   (Roundworm)   1 1
Caenorhabditis_briggsae_2 1 1
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 2 1
Echinococcus_multilocularis_ 2 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   2 1
Mnemiopsis_leidyi   (Sea walnut)   2 1
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 2
Hydra_vulgaris 1 1
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 1 1
Proterospongia_sp._ATCC_50818_ 1 1
Monosiga_brevicollis_ 1 1
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 1 1
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 1 1
Guillardia_theta_CCMP2712_v1.0_ 1 1
Thermobaculum_terrenum_ATCC_BAA-798 1 1
Rubrobacter_xylanophilus_DSM_9941 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 1 1
Anaerolinea_thermophila_UNI-1 1 1
Thermomicrobium_roseum_DSM_5159 1 1
Sphaerobacter_thermophilus_DSM_20745 1 1
Herpetosiphon_aurantiacus_DSM_785 1 1
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Chloroflexus_sp._MS-G 1 1
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aggregans_DSM_9485 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Truepera_radiovictrix_DSM_17093 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_deserti_VCD115 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Deinococcus_radiodurans_R1 1 1
Oceanithermus_profundus_DSM_14977 1 1
Marinithermus_hydrothermalis_DSM_14884 1 1
Meiothermus_silvanus_DSM_9946 1 1
Meiothermus_ruber_DSM_1279 2 2
Thermus_sp._CCB_US3_UF1 1 1
Thermus_scotoductus_SA-01 1 1
Thermus_thermophilus_HB27 1 1
Acidaminococcus_intestini_RyC-MR95 1 1
Acidaminococcus_fermentans_DSM_20731 1 1
Faecalibacterium_prausnitzii 1 1
Eubacterium_eligens_ATCC_27750 1 1
Eubacterium_limosum_KIST612 1 1
Clostridium_phytofermentans_ISDg 1 1
Clostridium_lentocellum_DSM_5427 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Butyrivibrio_fibrisolvens 1 1
Alkaliphilus_metalliredigens_QYMF 1 1
Candidatus_Cloacamonas_acidaminovorans 1 1
Gemmatimonas_aurantiaca_T-27 2 1
Niastella_koreensis_GR20-10 1 1
Chitinophaga_pinensis_DSM_2588 1 1
Salinibacter_ruber_M8 1 1
Rhodothermus_marinus_DSM_4252 1 1
Pedobacter_saltans_DSM_12145 1 1
Planctomyces_brasiliensis_DSM_5305 1 1
Planctomyces_limnophilus_DSM_3776 1 1
Rhodopirellula_baltica_SH_1 1 1
Pirellula_staleyi_DSM_6068 1 1
Fretibacterium_fastidiosum 1 1
Aminobacterium_colombiense_DSM_12261 1 1
Anaerobaculum_mobile_DSM_13181 1 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Treponema_primitia_ZAS-2 1 1
Spirochaeta_thermophila_DSM_6192 1 1
Denitrovibrio_acetiphilus_DSM_12809 1 1
Deferribacter_desulfuricans_SSM1 1 1
Flexistipes_sinusarabici_DSM_4947 1 1
Marinitoga_piezophila_KA3 1 1
Petrotoga_mobilis_SJ95 1 1
Mesotoga_prima_MesG1.Ag.4.2 1 1
Kosmotoga_olearia_TBF_19.5.1 1 1
Fervidobacterium_pennivorans_DSM_9078 1 1
Fervidobacterium_nodosum_Rt17-B1 1 1
Thermosipho_melanesiensis_BI429 1 1
Thermosipho_africanus_TCF52B 1 1
Thermotoga_lettingae_TMO 1 1
Thermotoga_thermarum_DSM_5069 1 1
Thermotoga_sp._RQ2 1 1
Thermotoga_naphthophila_RKU-10 1 1
Thermotoga_petrophila_RKU-1 1 1
Thermotoga_neapolitana_DSM_4359 1 1
Thermotoga_maritima_MSB8 1 1
Persephonella_marina_EX-H1 1 1
Dictyoglomus_thermophilum_H-6-12 1 1
Caldisericum_exile_AZM16c01 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Granulicella_tundricola_MP5ACTX9 1 1
Granulicella_mallensis_MP5ACTX8 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Terriglobus_saanensis_SP1PR4 1 1
Terriglobus_roseus_DSM_18391 1 1
Acidobacterium_capsulatum_ATCC_51196 1 1
Candidatus_Nitrospira_defluvii 1 1
Leptospirillum_ferrooxidans_C2-3 1 1
Candidatus_Methylomirabilis_oxyfera 1 1
Arcobacter_nitrofigilis_DSM_7299 1 1
Desulfarculus_baarsii_DSM_2075 1 1
Syntrophus_aciditrophicus_SB 1 1
Desulfomonile_tiedjei_DSM_6799 1 1
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfobacterium_autotrophicum_HRM2 1 1
Desulfococcus_oleovorans_Hxd3 1 1
Desulfovibrio_piezophilus 1 1
Desulfovibrio_aespoeensis_Aspo-2 1 1
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_alaskensis_G20 1 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1 1
Desulfovibrio_salexigens_DSM_2638 1 1
Geobacter_sp._M21 1 1
Geobacter_bemidjiensis_Bem 1 1
Haliangium_ochraceum_DSM_14365 2 2
Sorangium_cellulosum_'So_ce_56' 1 1
Anaeromyxobacter_sp._Fw109-5 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Dechloromonas_aromatica_RCB 1 1
Azoarcus_sp._KH32C 2 2
Azoarcus_sp._BH72 1 1
Aromatoleum_aromaticum_EbN1 1 1
Dechlorosoma_suillum_PS 1 1
Pseudogulbenkiania_sp._NH8B 1 1
Chromobacterium_violaceum_ATCC_12472 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1
beta_proteobacterium_CB 1 1
Methylibium_petroleiphilum_PM1 2 2
Thiomonas_arsenitoxydans 1 1
Thiomonas_intermedia_K12 1 1
Rubrivivax_gelatinosus_IL144 1 1
Leptothrix_cholodnii_SP-6 2 2
Ralstonia_eutropha_JMP134 2 2
Cupriavidus_taiwanensis_LMG_19424 3 3
Cupriavidus_metallidurans_CH34 2 2
Cupriavidus_necator_N-1 3 3
Ralstonia_eutropha_H16 3 3
Ralstonia_pickettii_12D 2 2
Ralstonia_solanacearum_CFBP2957 3 3
Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1 1 1
Verminephrobacter_eiseniae_EF01-2 1 1
Alicycliphilus_denitrificans_K601 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 1 1
Polaromonas_sp._JS666 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 1 1
Rhodoferax_ferrireducens_T118 2 2
Acidovorax_ebreus_TPSY 1 1
Acidovorax_sp._KKS102 2 2
Acidovorax_sp._JS42 1 1
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Comamonas_testosteroni_CNB-2 1 1
Herminiimonas_arsenicoxydans 1 1
Collimonas_fungivorans_Ter331 1 1
Janthinobacterium_sp._Marseille 1 1
Thiobacillus_denitrificans_ATCC_25259 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Nitrosomonas_sp._Is79A3 1 1
Nitrosomonas_eutropha_C91 1 1
Nitrosomonas_europaea_ATCC_19718 1 1
Sideroxydans_lithotrophicus_ES-1 1 1
Caulobacter_segnis_ATCC_21756 1 1
Novosphingobium_aromaticivorans_DSM_12444 1 1
Sphingobium_sp._SYK-6 1 1
Dinoroseobacter_shibae_DFL_12 1 1
Phaeobacter_gallaeciensis_2.10 1 1
Pseudovibrio_sp._FO-BEG1 1 1
Jannaschia_sp._CCS1 1 1
Ruegeria_sp._TM1040 1 1
Ruegeria_pomeroyi_DSS-3 2 2
Ketogulonicigenium_vulgare_Y25 1 1
Ketogulonigenium_vulgarum_WSH-001 1 1
Roseobacter_litoralis_Och_149 1 1
Roseobacter_denitrificans_OCh_114 2 2
Rhodobacter_sphaeroides_ATCC_17029 1 1
Rhodobacter_capsulatus_SB_1003 1 1
Paracoccus_denitrificans_PD1222 1 1
Rhodospirillum_photometricum_DSM_122 1 1
Tistrella_mobilis_KA081020-065 1 1
Magnetospirillum_magneticum_AMB-1 2 2
Rhodospirillum_centenum_SW 1 1
Rhodospirillum_rubrum_F11 1 1
Azospirillum_lipoferum_4B 2 2
Azospirillum_brasilense_Sp245 1 1
Gluconacetobacter_xylinus_NBRC_3288 1 1
Granulibacter_bethesdensis_CGDNIH1 1 1
Acidiphilium_multivorum_AIU301 2 2
Acidiphilium_cryptum_JF-5 2 2
Acetobacter_pasteurianus_IFO_3283-01 2 2
Polymorphum_gilvum_SL003B-26A1 1 1
Candidatus_Puniceispirillum_marinum_IMCC1322 1 1
Starkeya_novella_DSM_506 1 1
Xanthobacter_autotrophicus_Py2 1 1
Azorhizobium_caulinodans_ORS_571 1 1
Methylobacterium_chloromethanicum_CM4 3 3
Methylobacterium_extorquens_AM1 3 3
Methylobacterium_sp._4-46 1 1
Methylobacterium_populi_BJ001 2 2
Methylobacterium_nodulans_ORS_2060 2 2
Methylobacterium_radiotolerans_JCM_2831 1 1
Parvibaculum_lavamentivorans_DS-1 1 1
Ochrobactrum_anthropi_ATCC_49188 2 2
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 1 1
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Brucella_abortus_S19 1 1
Sinorhizobium_fredii_NGR234 3 3
Sinorhizobium_medicae_WSM419 3 3
Sinorhizobium_meliloti_AK83 3 3
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1 1
Rhizobium_etli_CIAT_652 1 1
Rhizobium_leguminosarum_bv._viciae_3841 2 2
Agrobacterium_tumefaciens_str._C58 2 2
Agrobacterium_radiobacter_K84 3 3
Agrobacterium_sp._H13-3 1 1
Agrobacterium_vitis_S4 2 2
Mesorhizobium_sp._BNC1 1 1
Mesorhizobium_opportunistum_WSM2075 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Mesorhizobium_loti_MAFF303099 1 1
Methylocella_silvestris_BL2 1 1
Beijerinckia_indica_subsp._indica_ATCC_9039 2 2
Pelagibacterium_halotolerans_B2 1 1
Rhodomicrobium_vannielii_ATCC_17100 1 1
Hyphomicrobium_sp._MC1 1 1
Hyphomicrobium_denitrificans_ATCC_51888 1 1
Oligotropha_carboxidovorans_OM4 1 1
Rhodopseudomonas_palustris_BisA53 1 1
Nitrobacter_winogradskyi_Nb-255 1 1
Nitrobacter_hamburgensis_X14 1 1
Bradyrhizobium_japonicum_USDA_110 1 1
Bradyrhizobium_sp._ORS_278 1 1
Methylocystis_sp._SC2 1 1
Oceanimonas_sp._GK1 1 1
Photobacterium_profundum_SS9 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Alteromonas_macleodii_str._'Deep_ecotype' 1 1
Marinomonas_sp._MWYL1 1 1
Marinomonas_mediterranea_MMB-1 1 1
Halomonas_elongata_DSM_2581 1 1
Methylomicrobium_alcaliphilum 1 1
Methylomonas_methanica_MC09 1 1
Spiribacter_sp._UAH-SP71 1 1
Alkalilimnicola_ehrlichii_MLHE-1 1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1 1
Halorhodospira_halophila_SL1 1 1
Allochromatium_vinosum_DSM_180 1 1
Thiocystis_violascens_DSM_198 1 1
Pantoea_sp._At-9b 1 1
Pantoea_vagans_C9-1 1 1
Erwinia_billingiae_Eb661 1 1
Klebsiella_variicola_At-22 1 1
Klebsiella_pneumoniae_NTUH-K2044 1 1
Citrobacter_rodentium_ICC168 1 1
Pseudomonas_sp._TKP 1 1
Pseudomonas_sp._UW4 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_entomophila_L48 1 1
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_putida_F1 1 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_mendocina_ymp 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Pseudomonas_sp._VLB120 1 1
Candidatus_Caldiarchaeum_subterraneum 1 1
Cenarchaeum_symbiosum_A 1 1
Candidatus_Nitrosopumilus_sp._AR2 1 1
Nitrosopumilus_maritimus_SCM1 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1 1
Acidilobus_saccharovorans_345-15 1 1
Fervidicoccus_fontis_Kam940 1 1
Hyperthermus_butylicus_DSM_5456 1 1
Ignisphaera_aggregans_DSM_17230 1 1
Aeropyrum_pernix_K1 1 1
Staphylothermus_hellenicus_DSM_12710 1 1
Staphylothermus_marinus_F1 1 1
Metallosphaera_cuprina_Ar-4 1 1
Metallosphaera_sedula_DSM_5348 1 1
Acidianus_hospitalis_W1 1 1
Sulfolobus_tokodaii_str._7 1 1
Sulfolobus_islandicus_Y.N.15.51 1 1
Sulfolobus_solfataricus_P2 1 1
Sulfolobus_acidocaldarius_DSM_639 1 1
Thermofilum_sp._1910b 1 1
Thermofilum_pendens_Hrk_5 1 1
Vulcanisaeta_moutnovskia_768-28 2 2
Vulcanisaeta_distributa_DSM_14429 1 1
Caldivirga_maquilingensis_IC-167 1 1
Pyrobaculum_sp._1860 1 1
Pyrobaculum_calidifontis_JCM_11548 1 1
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Pyrobaculum_aerophilum_str._IM2 1 1
Thermoproteus_uzoniensis_768-20 1 1
Thermoproteus_tenax_Kra_1 1 1
halophilic_archaeon_DL31 1 1
Methanocella_arvoryzae_MRE50 1 1
Methanocella_conradii_HZ254 1 1
Methanocella_paludicola_SANAE 1 1
Methanosalsum_zhilinae_DSM_4017 1 1
Archaeoglobus_profundus_DSM_5631 1 1
Thermococcus_sp._4557 1 1
Thermococcus_onnurineus_NA1 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Thermococcus_sibiricus_MM_739 1 1
Thermococcus_barophilus_MP 1 1
Pyrococcus_sp._ST04 1 1
Pyrococcus_yayanosii_CH1 1 1
Pyrococcus_horikoshii_OT3 1 1
Pyrococcus_abyssi_GE5 1 1
Pyrococcus_furiosus_COM1 1 1
Thermoplasma_volcanium_GSS1 1 1
Thermoplasma_acidophilum_DSM_1728 1 1
Picrophilus_torridus_DSM_9790 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halopiger_xanaduensis_SH-6 1 1
Haloterrigena_turkmenica_DSM_5511 1 1
Natrinema_sp._J7-2 1 1
Natrialba_magadii_ATCC_43099 1 1
Halorubrum_lacusprofundi_ATCC_49239 1 1
Haloquadratum_walsbyi_DSM_16790 1 1
Halogeometricum_borinquense_DSM_11551 1 1
Haloferax_mediterranei_ATCC_33500 1 1
Haloferax_volcanii_DS2 1 1
Halomicrobium_mukohataei_DSM_12286 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Natronomonas_pharaonis_DSM_2160 1 1
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 1 1
Halalkalicoccus_jeotgali_B3 1 1
Aciduliprofundum_sp._MAR08-339 1 1
Aciduliprofundum_boonei_T469 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2 2
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1 1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1 1
Chamaesiphon_minutus_PCC_6605 2 1
Deinococcus_peraridilitoris_DSM_19664 2 2
Thermus_oshimai_JL-2 1 1
Thermus_thermophilus_JL-18 1 1
Thermus_thermophilus_SG0.5JP17-16 1 1
Thermus_thermophilus_HB8 1 1
Faecalibacterium_prausnitzii_L2-6 1 1
Salinibacter_ruber_DSM_13855 1 1
Rhodothermus_marinus_SG0.5JP17-172 1 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1 1
Leptospira_interrogans_serovar_Lai_str._56601 1 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Spirochaeta_thermophila_DSM_6578 1 1
Thermotoga_maritima_MSB8 1 1
Leptospirillum_ferriphilum_ML-04 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Desulfovibrio_vulgaris_RCH1 1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1 1
Desulfovibrio_vulgaris_str._Hildenborough 1 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Geobacter_sp._M18 1 1
Sorangium_cellulosum_So0157-2 1 1
Anaeromyxobacter_sp._K 1 1
Anaeromyxobacter_dehalogenans_2CP-C 1 1
Ralstonia_pickettii_12J 2 2
Ralstonia_solanacearum_FQY_4 2 2
Ralstonia_solanacearum_Po82 3 3
Ralstonia_solanacearum_PSI07 2 2
Ralstonia_solanacearum_CMR15 2 2
Ralstonia_solanacearum_GMI1000 2 2
Burkholderia_sp._YI23 2 2
Alicycliphilus_denitrificans_BC 1 1
Variovorax_paradoxus_B4 1 1
Variovorax_paradoxus_EPS 1 1
Nitrosomonas_sp._AL212 1 1
Phaeobacter_gallaeciensis_DSM_17395 1 1
Phaeobacter_gallaeciensis_DSM_26640 1 1
Leisingera_methylohalidivorans_DSM_14336 1 1
Octadecabacter_antarcticus_307 1 1
Octadecabacter_arcticus_238 2 2
Rhodobacter_sphaeroides_KD131 1 1
Rhodobacter_sphaeroides_ATCC_17025 1 1
Rhodobacter_sphaeroides_2.4.1 1 1
Paracoccus_aminophilus_JCM_7686 1 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1 1
Rhodospirillum_rubrum_ATCC_11170 1 1
Gluconobacter_oxydans_H24 1 1
Acetobacter_pasteurianus_386B 2 2
Acetobacter_pasteurianus_IFO_3283-12 2 2
Acetobacter_pasteurianus_IFO_3283-01-42C 2 2
Acetobacter_pasteurianus_IFO_3283-32 2 2
Acetobacter_pasteurianus_IFO_3283-26 2 2
Acetobacter_pasteurianus_IFO_3283-22 2 2
Acetobacter_pasteurianus_IFO_3283-07 2 2
Acetobacter_pasteurianus_IFO_3283-03 2 2
Methylobacterium_extorquens_DM4 2 2
Methylobacterium_extorquens_PA1 2 2
Brucella_ceti_TE10759-12 1 1
Brucella_ceti_TE28753-12 1 1
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_NI 1 1
Brucella_melitensis_M5-90 1 1
Brucella_melitensis_M28 1 1
Brucella_melitensis_bv._1_str._16M 1 1
Brucella_abortus_A13334 1 1
Brucella_melitensis_biovar_Abortus_2308 1 1
Brucella_abortus_bv._1_str._9-941 1 1
Sinorhizobium_fredii_USDA_257 2 2
Sinorhizobium_fredii_HH103 2 2
Sinorhizobium_meliloti_2011 2 2
Sinorhizobium_meliloti_GR4 3 3
Sinorhizobium_meliloti_Rm41 3 3
Sinorhizobium_meliloti_SM11 3 3
Sinorhizobium_meliloti_BL225C 3 3
Sinorhizobium_meliloti_1021 3 3
Rhizobium_etli_CFN_42 1 1
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Rhizobium_tropici_CIAT_899 2 2
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Mesorhizobium_australicum_WSM2073 1 1
Hyphomicrobium_denitrificans_1NES1 1 1
Oligotropha_carboxidovorans_OM5 1 1
Oligotropha_carboxidovorans_OM5 1 1
Rhodopseudomonas_palustris_DX-1 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_HaA2 1 1
Rhodopseudomonas_palustris_BisB5 1 1
Rhodopseudomonas_palustris_BisB18 1 1
Rhodopseudomonas_palustris_CGA009 1 1
Bradyrhizobium_sp._S23321 1 1
Bradyrhizobium_sp._BTAi1 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Bradyrhizobium_japonicum_USDA_6 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Alteromonas_macleodii_AltDE1 1 1
Alcanivorax_dieselolei_B5 1 1
Spiribacter_salinus_M19-40 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Thioflavicoccus_mobilis_8321 1 1
Klebsiella_pneumoniae_JM45 1 1
Klebsiella_pneumoniae_CG43 1 1
Klebsiella_pneumoniae_342 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 1 1
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_putida_S16 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_W619 2 2
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_A506 1 1
Pseudomonas_fluorescens_R124 1 1
Pseudomonas_fluorescens_Pf0-1 1 1
Pseudomonas_resinovorans_NBRC_106553 1 1
Pseudomonas_mendocina_NK-01 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Caldisphaera_lagunensis_DSM_15908 1 1
Aeropyrum_camini_SY1_=_JCM_12091 1 1
Sulfolobus_islandicus_LAL14/1 1 1
Sulfolobus_islandicus_REY15A 1 1
Sulfolobus_islandicus_HVE10/4 1 1
Sulfolobus_islandicus_Y.G.57.14 1 1
Sulfolobus_islandicus_L.S.2.15 1 1
Sulfolobus_islandicus_M.16.27 1 1
Sulfolobus_islandicus_M.14.25 1 1
Sulfolobus_islandicus_M.16.4 1 1
Sulfolobus_islandicus_L.D.8.5 1 1
Sulfolobus_solfataricus_98/2 1 1
Sulfolobus_acidocaldarius_SUSAZ 1 1
Sulfolobus_acidocaldarius_Ron12/I 1 1
Sulfolobus_acidocaldarius_N8 1 1
Methanomethylovorans_hollandica_DSM_15978 1 1
Methanolobus_psychrophilus_R15 1 1
Thermococcus_sp._AM4 1 1
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 1 1
Ferroplasma_acidarmanus_fer1 1 1
Natrinema_pellirubrum_DSM_15624 1 1
Natronococcus_occultus_SP4 1 1
Natronobacterium_gregoryi_SP2 1 1
Haloquadratum_walsbyi_C23 1 1
Halorhabdus_tiamatea_SARL4B 1 1
Natronomonas_moolapensis_8.8.11 1 1
Haloarcula_hispanica_N601 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   1 1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Pongo_abelii_69_2   (Sumatran orangutan)   1 1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1 1
Macaca_mulatta_69_1   (Rhesus monkey)   1 1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1 1
Otolemur_garnettii_69_3   (Small-eared galago)   1 1
Microcebus_murinus_69_1   (Gray mouse lemur)   2 1
Mus_musculus_69_38   (House mouse)   1 1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1 1
Cavia_porcellus_69_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_69_2   (Rabbit)   1 1
Ochotona_princeps_69   (American pika)   1 1
Tupaia_belangeri_69   (Northern tree shrew)   2 1
Sus_scrofa_69_10.2   (Pig)   1 1
Bos_taurus_69_3.1   (Cattle)   1 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1 1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1 1
Canis_familiaris_69_3.1   (Dog)   2 2
Felis_catus_69   (Domestic cat)   1 1
Equus_caballus_69_2   (Horse)   1 1
Myotis_lucifugus_69_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_69_1   (Large flying fox)   1 1
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   2 1
Procavia_capensis_69_1   (Cape rock hyrax)   2 1
Loxodonta_africana_69_3   (African savanna elephant)   1 1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1 1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1 1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1 1
Ornithorhynchus_anatinus_69_5   (Platypus)   1 1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_69_2   (Turkey)   1 1
Gallus_gallus_69_2   (Chicken)   1 1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1 1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1 1
Anolis_carolinensis_69_2.0   (Green anole)   1 1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1 1
Latimeria_chalumnae_69_1   (Coelacanth)   1 1
Gadus_morhua_69_1   (Atlantic cod)   1 1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_69_4   (Torafugu)   1 1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1 1
Oryzias_latipes_69_1   (Japanese medaka)   1 1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1 1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1 1
Danio_rerio_69_9   (Zebrafish)   1 1
Ciona_intestinalis_69   (Vase tunicate)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   1 1
Caenorhabditis_elegans_69_215   (Roundworm)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   8 8
Homo_sapiens__(NCBI_version)   (Human)   2 2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1 1
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
NCBI_plasmid_sequences_(Plasmids) 52 52
Protein_Data_Bank_(all_PDB_sequenc) 3 3
TargetDB__(Targets) 7 7
STRING_v9.0.5_(STRING) 324 323
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 21 21
Uniprot_2018_03_genome 6492 6454
NCBI_2017_08_genome 12124 12078
PDB_chains_(SCOP_1.75)_(PDB) 1 1

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