SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for TSP-1 type 1 repeat superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a TSP-1 type 1 repeat domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   611 154
Pan_troglodytes_76_2.1.4   (Chimpanzee)   244 62
Gorilla_gorilla_76_3.1   (Western gorilla)   316 84
Pongo_abelii_76_2   (Sumatran orangutan)   227 60
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   247 61
Papio_anubis_76   (Olive baboon)   275 67
Macaca_mulatta_76_1   (Rhesus monkey)   347 97
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   590 144
Otolemur_garnettii_76_3   (Small-eared galago)   254 67
Microcebus_murinus_76_1   (Gray mouse lemur)   186 57
Rattus_norvegicus_76_5.0   (Norway rat)   277 73
Mus_musculus_76_38   (House mouse)   545 129
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   191 56
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   307 68
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   241 62
Cavia_porcellus_76_3   (Domestic guinea pig)   276 65
Oryctolagus_cuniculus_76_2   (Rabbit)   262 59
Ochotona_princeps_76   (American pika)   204 59
Tupaia_belangeri_76   (Northern tree shrew)   151 54
Sus_scrofa_76_10.2   (Pig)   270 76
Bos_taurus_76_3.1   (Cattle)   315 70
Ovis_aries_76_3.1   (Sheep)   253 68
Vicugna_pacos_76_1   (Alpaca)   123 34
Tursiops_truncatus_76_1   (Bottlenose dolphin)   223 61
Mustela_putorius_furo_76_1.0   (Domestic ferret)   276 63
Ailuropoda_melanoleuca_76_1   (Giant panda)   308 77
Canis_familiaris_76_3.1   (Dog)   369 81
Felis_catus_76_6.2   (Domestic cat)   266 65
Equus_caballus_76_2   (Horse)   351 75
Myotis_lucifugus_76_2.0   (Little brown bat)   222 57
Pteropus_vampyrus_76_1   (Large flying fox)   218 60
Sorex_araneus_76_1   (European shrew)   127 40
Erinaceus_europaeus_76   (Western European hedgehog)   145 47
Procavia_capensis_76_1   (Cape rock hyrax)   192 62
Loxodonta_africana_76_3   (African savanna elephant)   297 87
Echinops_telfairi_76   (Small Madagascar hedgehog)   175 60
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   278 72
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   127 37
Macropus_eugenii_76_1.0   (Tammar wallaby)   187 58
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   298 79
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   259 64
Ornithorhynchus_anatinus_76_5   (Platypus)   237 77
Saccoglossus_kowalevskii_v3.0 431 141
Petromyzon_marinus_76_7.0   (Sea lamprey)   192 50
Meleagris_gallopavo_76_2   (Turkey)   261 75
Gallus_gallus_76_4   (Chicken)   273 64
Anas_platyrhynchos_76_1.0   (Mallard)   236 61
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   256 67
Ficedula_albicollis_76_1.0   (Collared flycatcher)   236 61
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   285 79
Anolis_carolinensis_76_2.0   (Green anole)   285 67
Xenopus_laevis_   (African clawed frog)   113 56
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   302 74
Latimeria_chalumnae_76_1   (Coelacanth)   302 94
Lepisosteus_oculatus_76   (Spotted gar)   422 94
Gadus_morhua_76_1   (Atlantic cod)   275 80
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   317 90
Takifugu_rubripes_76_4   (Torafugu)   1009 288
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   355 102
Oryzias_latipes_76_1   (Japanese medaka)   332 91
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   311 81
Poecilia_formosa_76   (Amazon molly)   317 83
Oreochromis_niloticus_76_1.0   (Nile tilapia)   460 112
Astyanax_mexicanus_76   (Mexican tetra)   298 88
Danio_rerio_76_9   (Zebrafish)   461 131
Oikopleura_dioica 363 99
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   407 115
Ciona_intestinalis_76   (Vase tunicate)   356 104
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   260 75
Adineta_vaga 128 25
Octopus_bimaculoides_280 209 67
Crassostrea_gigas_22   (Pacific oyster)   404 118
Lottia_gigantea_   (Owl limpet)   171 61
Helobdella_robusta_ 108 29
Capitella_sp._I_ 195 90
Danaus_plexippus_OGS1.0   (Monarch butterfly)   60 29
Heliconius_melpomene_   (Postman butterfly)   45 23
Bombyx_mori_   (Domestic silkworm)   37 19
Nasonia_vitripennis_   (Jewel wasp)   56 16
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   183 61
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   62 19
Linepithema_humile_v1.1   (Argentine ant)   67 25
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   57 21
Solenopsis_invicta_v.2.2.3   (Red fire ant)   44 23
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   64 20
Atta_cephalotes_v1.1 64 24
Camponotus_floridanus_v3.3   (Florida carpenter ant)   67 18
Lucilia_cuprina   (Australian sheep blowfly)   53 15
Drosophila_grimshawi_1.3 54 16
Drosophila_willistoni_1.3 54 15
Drosophila_pseudoobscura_2.13 52 15
Drosophila_persimilis_1.3 48 15
Drosophila_suzukii 50 14
Drosophila_yakuba_1.3 51 16
Drosophila_simulans_1.3 49 16
Drosophila_sechellia_1.3 47 13
Drosophila_melanogaster_76_5   (Fruit fly)   130 28
Drosophila_erecta_1.3 52 16
Drosophila_ananassae_1.3 55 17
Drosophila_virilis_1.2 49 15
Drosophila_mojavensis_1.3 49 14
Megaselia_scalaris_22 14 7
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   48 13
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   56 20
Anopheles_darlingi_22   (American malaria mosquito)   34 15
Anopheles_gambiae_49_3j   (African malaria mosquito)   42 14
Tribolium_castaneum_3.0   (Red flour beetle)   56 15
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   52 16
Acyrthosiphon_pisum_   (Pea aphid)   44 8
Rhodnius_prolixus_22 40 14
Daphnia_pulex_   (Common water flea)   62 15
Strigamia_maritima_22 77 21
Sarcoptes_scabiei 31 8
Tetranychus_urticae_   (Two-spotted spider mite)   20 8
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   42 10
Pristionchus_pacificus_ 52 21
Meloidogyne_incognita_   (Southern root-knot nematode)   67 20
Meloidogyne_hapla_ 40 10
Onchocerca_volvulus_22 72 22
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   106 29
Caenorhabditis_japonica_ 82 27
Caenorhabditis_brenneri_ 129 38
Caenorhabditis_remanei_ 96 33
Caenorhabditis_elegans_76_235   (Roundworm)   198 54
Caenorhabditis_briggsae_2 94 32
Trichinella_spiralis_22 74 25
Hymenolepis_microstoma_ 28 13
Echinococcus_multilocularis_ 31 15
Echinococcus_granulosus_ 29 14
Taenia_solium_   (Pork tapeworm)   30 18
Schistosoma_mansoni_ 31 15
Mnemiopsis_leidyi   (Sea walnut)   94 47
Thelohanellus_kitauei 4 3
Acropora_digitifera_v1.0 291 127
Nematostella_vectensis_1.0   (Starlet sea anemone)   295 125
Hydra_vulgaris 345 115
Amphimedon_queenslandica 44 18
Trichoplax_adhaerens_ 35 9
Proterospongia_sp._ATCC_50818_ 15 10
Monosiga_brevicollis_ 6 3
Sphaeroforma_arctica_JP610_ 22 12
Capsaspora_owczarzaki_ATCC_30864_ 50 9
Dictyostelium_discoideum 2 1
Dictyostelium_purpureum_ 5 4
Selaginella_moellendorffii_ 6 2
Manihot_esculenta_v147   (Cassava)   1 1
Aquilegia_coerulea_v195 3 3
Oryza_barthii_22   (African wild rice)   1 1
Oryza_meridionalis_22 2 2
Oryza_glumaepatula_22 1 1
Oryza_glaberrima   (African rice)   1 1
Oryza_punctata_22 1 1
Oryza_nivara_22 1 1
Oryza_brachyantha_22   (Malo sina)   1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2 2
Oryza_sativa_v193   (Rice)   2 2
Panicum_virgatum_v202   (Switchgrass)   1 1
Setaria_italica_v164   (Foxtail millet)   1 1
Zea_mays_subsp._mays_   (Maize)   3 3
Zea_mays_v181   (Maize)   3 3
Sorghum_bicolor_   (Sorghum)   1 1
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   2 2
Amborella_trichopoda_22 1 1
Physcomitrella_patens 1 1
Coccomyxa_subellipsoidea_sp._C-169_v2 8 3
Asterochloris_sp._Cgr/DA1pho_v1.0 7 3
Chlorella_variabilis_sp._NC64A_ 10 3
Chlorella_vulgaris_ 5 2
Ostreococcus_sp._RCC809_ 8 5
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 2 2
Bathycoccus_prasinos_ 10 4
Micromonas_sp._RCC299_ 4 2
Micromonas_pusilla_CCMP1545_v3.0 8 4
Thecamonas_trahens_ATCC_50062_ 4 1
Bigelowiella_natans_CCMP2755_22 14 7
Ectocarpus_siliculosus 1 1
Pythium_iwayamai_DAOM_BR242034_22 31 4
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 46 5
Pythium_aphanidermatum_DAOM_BR444_22 42 3
Pythium_irregulare_DAOM_BR486_22 36 3
Pythium_vexans_DAOM_BR484_22 28 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   40 3
Phytophthora_sojae_1.1 79 7
Phytophthora_infestans_T30-4_ 25 2
Phytophthora_capsici_ 24 1
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 2 2
Cryptosporidium_hominis 17 7
Cryptosporidium_muris 31 10
Cryptosporidium_parvum_Iowa_II 30 10
Neospora_caninum 30 8
Toxoplasma_gondii_VEG 24 6
Toxoplasma_gondii_ME49 24 6
Toxoplasma_gondii_GT1 25 6
Babesia_bovis_T2Bo_ 8 8
Theileria_parva__ 4 4
Theileria_annulata 4 4
Plasmodium_falciparum_3D7_ 10 8
Plasmodium_vivax_SaI-1_7.0 11 9
Plasmodium_knowlesi_strain_H_ 7 7
Plasmodium_yoelii_ssp._yoelii_1_ 10 7
Plasmodium_chabaudi_ 9 6
Plasmodium_berghei_ANKA_ 10 7
Symbiodinium_minutum_clade_B1_v1.2 473 75
Guillardia_theta_CCMP2712_v1.0_ 14 5
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Desulfatibacillum_alkenivorans_AK-01 7 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   283 84
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   122 28
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   55 17
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   77 23
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   140 44
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1
Neospora_caninum_Nc-Liverpool_6.2 30 8
Plasmodium_falciparum_HB3_ 10 8
Plasmodium_falciparum_Dd2_ 8 6
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Bdellovibrio_exovorus_JSS 5 3
Bdellovibrio_bacteriovorus_str._Tiberius 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   272 67
Pan_troglodytes_69_2.1.4   (Chimpanzee)   233 59
Gorilla_gorilla_69_3.1   (Western gorilla)   253 63
Pongo_abelii_69_2   (Sumatran orangutan)   227 60
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   243 62
Macaca_mulatta_69_1   (Rhesus monkey)   236 63
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   270 64
Otolemur_garnettii_69_3   (Small-eared galago)   252 66
Microcebus_murinus_69_1   (Gray mouse lemur)   186 57
Rattus_norvegicus_69_3.4   (Norway rat)   243 58
Mus_musculus_69_38   (House mouse)   286 64
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   191 56
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   244 62
Cavia_porcellus_69_3   (Domestic guinea pig)   260 60
Oryctolagus_cuniculus_69_2   (Rabbit)   257 57
Ochotona_princeps_69   (American pika)   204 59
Tupaia_belangeri_69   (Northern tree shrew)   151 54
Sus_scrofa_69_10.2   (Pig)   213 64
Bos_taurus_69_3.1   (Cattle)   275 62
Vicugna_pacos_69_1   (Alpaca)   123 34
Tursiops_truncatus_69_1   (Bottlenose dolphin)   223 61
Mustela_putorius_furo_69_1.0   (Domestic ferret)   276 63
Ailuropoda_melanoleuca_69_1   (Giant panda)   270 67
Canis_familiaris_69_3.1   (Dog)   258 60
Felis_catus_69   (Domestic cat)   155 52
Equus_caballus_69_2   (Horse)   255 61
Myotis_lucifugus_69_2.0   (Little brown bat)   218 56
Pteropus_vampyrus_69_1   (Large flying fox)   218 60
Sorex_araneus_69_1   (European shrew)   127 40
Erinaceus_europaeus_69   (Western European hedgehog)   145 47
Procavia_capensis_69_1   (Cape rock hyrax)   192 62
Loxodonta_africana_69_3   (African savanna elephant)   221 64
Echinops_telfairi_69   (Small Madagascar hedgehog)   175 60
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   159 52
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   127 37
Macropus_eugenii_69_1.0   (Tammar wallaby)   187 58
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   244 64
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   252 61
Ornithorhynchus_anatinus_69_5   (Platypus)   207 69
Petromyzon_marinus_69_7.0   (Sea lamprey)   130 39
Meleagris_gallopavo_69_2   (Turkey)   238 67
Gallus_gallus_69_2   (Chicken)   240 63
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   253 65
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   243 64
Anolis_carolinensis_69_2.0   (Green anole)   264 66
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   274 66
Latimeria_chalumnae_69_1   (Coelacanth)   253 74
Gadus_morhua_69_1   (Atlantic cod)   263 74
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   240 69
Takifugu_rubripes_69_4   (Torafugu)   284 74
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   307 79
Oryzias_latipes_69_1   (Japanese medaka)   267 69
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   311 81
Oreochromis_niloticus_69_1.0   (Nile tilapia)   330 79
Danio_rerio_69_9   (Zebrafish)   332 90
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   200 56
Ciona_intestinalis_69   (Vase tunicate)   333 99
Drosophila_melanogaster_69_5   (Fruit fly)   52 15
Caenorhabditis_elegans_69_215   (Roundworm)   102 34

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   633 165
Homo_sapiens__(NCBI_version)   (Human)   341 81
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   265 63
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   80 27
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   77 39
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   66 19
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 107 107
PDB_chains_(SCOP_1.75)_(PDB) 2 1
Protein_Data_Bank_(all_PDB_sequenc) 122 87
Protozoadb_2010_08_(Protozoadb) 277 136
TargetDB__(Targets) 310 101
STRING_v9.0.5_(STRING) 9521 2746
Uniprot_2018_03_genome 78679 23035
NCBI_2017_08_genome 129968 31969

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