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Domain combinations for Positive stranded ssRNA viruses superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Positive stranded ssRNA viruses domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   5 5
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_76_3.1   (Western gorilla)   2 2
Pongo_abelii_76_2   (Sumatran orangutan)   1 1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1 1
Papio_anubis_76   (Olive baboon)   1 1
Macaca_mulatta_76_1   (Rhesus monkey)   2 2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   3 3
Otolemur_garnettii_76_3   (Small-eared galago)   1 1
Rattus_norvegicus_76_5.0   (Norway rat)   2 2
Mus_musculus_76_38   (House mouse)   4 4
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1 1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1 1
Cavia_porcellus_76_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_76_2   (Rabbit)   1 1
Ochotona_princeps_76   (American pika)   1 1
Tupaia_belangeri_76   (Northern tree shrew)   2 2
Sus_scrofa_76_10.2   (Pig)   2 2
Bos_taurus_76_3.1   (Cattle)   1 1
Ovis_aries_76_3.1   (Sheep)   1 1
Vicugna_pacos_76_1   (Alpaca)   1 1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1 1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1 1
Canis_familiaris_76_3.1   (Dog)   2 2
Felis_catus_76_6.2   (Domestic cat)   1 1
Equus_caballus_76_2   (Horse)   1 1
Myotis_lucifugus_76_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_76_1   (Large flying fox)   1 1
Sorex_araneus_76_1   (European shrew)   1 1
Loxodonta_africana_76_3   (African savanna elephant)   1 1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1 1
Gallus_gallus_76_4   (Chicken)   2 2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_76_4   (Torafugu)   2 2
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 1 1
Aspergillus_fumigatus_Af293 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   1 1
Thellungiella_halophila_v173 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 3 3
Arabidopsis_lyrata_   (Lyrate rockcress)   2 2
Arabidopsis_thaliana_10   (Thale cress)   4 4
Cryptosporidium_parvum_Iowa_II 1 1
Bacillus_halodurans_C-125 1 1
Bacillus_cereus_03BB102 1 1
Bacillus_anthracis_str._A0248 1 1
Rhodopirellula_baltica_SH_1 2 2
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Desulfotalea_psychrophila_LSv54 1 1
Cupriavidus_metallidurans_CH34 1 1
Burkholderia_cenocepacia_HI2424 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 2 2
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Azotobacter_vinelandii_DJ 1 1

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Strains
Genome     Number   Proteins
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Aspergillus_fumigatus_A1163_ 1 1
Schizosaccharomyces_pombe_972h-_ 1 1
Lactobacillus_acidophilus_La-14 1 1
Lactobacillus_acidophilus_NCFM 1 1
Bacillus_toyonensis_BCT-7112 1 1
Bacillus_thuringiensis_HD-771 1 1
Bacillus_thuringiensis_HD-789 1 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1 1
Bacillus_cereus_biovar_anthracis_str._CI 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_G9842 1 1
Bacillus_cereus_Q1 1 1
Bacillus_cereus_F837/76 1 1
Bacillus_cereus_E33L 1 1
Bacillus_anthracis_str._H9401 1 1
Bacillus_anthracis_str._CDC_684 1 1
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._Sterne 1 1
Bacillus_anthracis_str._Ames 1 1
Desulfovibrio_vulgaris_RCH1 1 1
Desulfovibrio_vulgaris_str._Hildenborough 1 1
Burkholderia_cenocepacia_MC0-3 1 1
Burkholderia_cenocepacia_AU_1054 1 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 2 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 2 2
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Escherichia_coli_str._'clone_D_i2' 1 1
Escherichia_coli_str._'clone_D_i14' 1 1
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_IAI39 1 1
Escherichia_coli_SMS-3-5 1 1
Escherichia_coli_CFT073 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   1 1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Pongo_abelii_69_2   (Sumatran orangutan)   1 1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1 1
Macaca_mulatta_69_1   (Rhesus monkey)   1 1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1 1
Otolemur_garnettii_69_3   (Small-eared galago)   1 1
Rattus_norvegicus_69_3.4   (Norway rat)   1 1
Mus_musculus_69_38   (House mouse)   1 1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1 1
Cavia_porcellus_69_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_69_2   (Rabbit)   1 1
Ochotona_princeps_69   (American pika)   1 1
Tupaia_belangeri_69   (Northern tree shrew)   2 2
Sus_scrofa_69_10.2   (Pig)   1 1
Bos_taurus_69_3.1   (Cattle)   1 1
Vicugna_pacos_69_1   (Alpaca)   1 1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1 1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1 1
Canis_familiaris_69_3.1   (Dog)   1 1
Felis_catus_69   (Domestic cat)   1 1
Equus_caballus_69_2   (Horse)   1 1
Myotis_lucifugus_69_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_69_1   (Large flying fox)   1 1
Sorex_araneus_69_1   (European shrew)   1 1
Loxodonta_africana_69_3   (African savanna elephant)   1 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1 1
Gallus_gallus_69_2   (Chicken)   1 1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_69_4   (Torafugu)   1 1
Arabidopsis_thaliana_10   (Thale cress)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   5 5
Homo_sapiens__(NCBI_version)   (Human)   3 3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1 1
NCBI_plasmid_sequences_(Plasmids) 4 4
Protozoadb_2010_08_(Protozoadb) 2 2
TargetDB__(Targets) 13 10
STRING_v9.0.5_(STRING) 65 65
PDB_chains_(SCOP_1.75)_(PDB) 163 157
NCBI_viral_sequences_(Viral) 569 336
Protein_Data_Bank_(all_PDB_sequenc) 3183 2887
NCBI_2017_08_genome 3631 2665
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 6634 6441
UniProt__viral_sequences_(Viral) 35200 31852
Uniprot_2018_03_genome 130788 118151

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