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Domain combinations for Collagen-binding domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Collagen-binding domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Proterospongia_sp._ATCC_50818_ 7 4
Monosiga_brevicollis_ 3 3
Gossypium_raimondii_v221 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1 1
Physcomitrella_patens 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Theileria_parva__ 1 1
Leptolyngbya_sp._PCC_7376 13 1
Pseudanabaena_sp._PCC_7367 1 1
Synechocystis_sp._PCC_6803 1 1
Microcoleus_sp._PCC_7113 3 3
Trichodesmium_erythraeum_IMS101 80 22
Geitlerinema_sp._PCC_7407 1 1
Gloeocapsa_sp._PCC_7428 3 2
Halothece_sp._PCC_7418 8 3
Microcystis_aeruginosa_NIES-843 4 3
Gloeobacter_violaceus_PCC_7421 2 1
Rivularia_sp._PCC_7116 5 4
Calothrix_sp._PCC_7507 2 1
Anabaena_variabilis_ATCC_29413 9 2
Nostoc_sp._PCC_7107 8 2
Nostoc_punctiforme_PCC_73102 2 1
Nostoc_sp._PCC_7120 10 5
Nostoc_sp._PCC_7524 4 1
Anabaena_sp._90 5 3
Stackebrandtia_nassauensis_DSM_44728 1 1
Streptosporangium_roseum_DSM_43021 2 2
Kribbella_flavida_DSM_17836 1 1
Actinoplanes_sp._SE50/110 1 1
Intrasporangium_calvum_DSM_43043 1 1
Cellulomonas_fimi_ATCC_484 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 4 4
Anaerolinea_thermophila_UNI-1 1 1
Herpetosiphon_aurantiacus_DSM_785 4 4
Chloroflexus_sp._MS-G 1 1
Chloroflexus_sp._Y-400-fl 9 2
Chloroflexus_aggregans_DSM_9485 1 1
Chloroflexus_aurantiacus_J-10-fl 9 2
Deinococcus_gobiensis_I-0 3 3
Deinococcus_deserti_VCD115 1 1
Deinococcus_maricopensis_DSM_21211 4 4
Deinococcus_geothermalis_DSM_11300 2 2
Deinococcus_proteolyticus_MRP 2 2
Deinococcus_radiodurans_R1 3 3
Oceanithermus_profundus_DSM_14977 2 1
Meiothermus_ruber_DSM_1279 1 1
Thermus_sp._CCB_US3_UF1 1 1
Clostridium_clariflavum_DSM_19732 6 2
Clostridium_thermocellum_ATCC_27405 3 1
Thermincola_potens_JR 2 1
Eubacterium_limosum_KIST612 1 1
Clostridium_phytofermentans_ISDg 1 1
[Ruminococcus]_obeum 1 1
Eubacterium_rectale_M104/1 1 1
Eubacterium_rectale_ATCC_33656 3 1
Roseburia_hominis_A2-183 1 1
Roseburia_intestinalis 7 3
Clostridium_sp._BNL1100 2 1
Clostridium_novyi_NT 2 1
Clostridium_tetani_E88 3 2
Clostridium_perfringens_ATCC_13124 2 1
Clostridium_cellulovorans_743B 11 3
Clostridium_botulinum_A_str._ATCC_3502 5 2
Mahella_australiensis_50-1_BON 2 2
Thermosediminibacter_oceani_DSM_16646 1 1
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_kristjanssonii_177R1B 1 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1 1
Thermoanaerobacter_sp._X514 1 1
Thermoanaerobacter_italicus_Ab9 1 1
Thermoanaerobacter_wiegelii_Rt8.B1 1 1
Lactobacillus_crispatus_ST1 1 1
Lactobacillus_amylovorus_GRL1118 2 2
Lactobacillus_helveticus_DPC_4571 1 1
Lactobacillus_acidophilus_30SC 1 1
Streptococcus_agalactiae_A909 1 1
Exiguobacterium_sp._MH3 3 2
Exiguobacterium_sp._AT1b 5 2
Exiguobacterium_sibiricum_255-15 2 1
Brevibacillus_brevis_NBRC_100599 9 5
Paenibacillus_sp._JDR-2 2 1
Paenibacillus_terrae_HPL-003 3 3
Paenibacillus_mucilaginosus_3016 2 1
Paenibacillus_polymyxa_M1 3 3
Geobacillus_thermoglucosidasius_C56-YS93 1 1
Lysinibacillus_sphaericus_C3-41 2 1
Anoxybacillus_flavithermus_WK1 1 1
Geobacillus_sp._WCH70 4 2
Halobacillus_halophilus_DSM_2266 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_halodurans_C-125 1 1
Bacillus_weihenstephanensis_KBAB4 4 4
Bacillus_thuringiensis_str._Al_Hakam 3 3
Bacillus_cereus_03BB102 3 3
Bacillus_anthracis_str._A0248 4 4
Bacillus_megaterium_DSM_319 2 2
Chlorobium_chlorochromatii_CaD3 3 1
Haliscomenobacter_hydrossis_DSM_1100 2 1
Niastella_koreensis_GR20-10 4 4
Chitinophaga_pinensis_DSM_2588 2 2
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1 1
Flavobacterium_psychrophilum_JIP02/86 1 1
Isosphaera_pallida_ATCC_43644 1 1
Planctomyces_brasiliensis_DSM_5305 2 1
Planctomyces_limnophilus_DSM_3776 1 1
Rhodopirellula_baltica_SH_1 3 3
Pirellula_staleyi_DSM_6068 3 3
Brachyspira_murdochii_DSM_12563 2 2
Brachyspira_intermedia_PWS/A 2 2
Brachyspira_pilosicoli_95/1000 1 1
Brachyspira_hyodysenteriae_WA1 1 1
Treponema_azotonutricium_ZAS-9 2 1
Treponema_primitia_ZAS-2 5 2
Spirochaeta_thermophila_DSM_6192 2 1
Candidatus_Solibacter_usitatus_Ellin6076 5 4
Bacteriovorax_marinus_SJ 2 1
Desulfatibacillum_alkenivorans_AK-01 3 2
Desulfobacterium_autotrophicum_HRM2 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Haliangium_ochraceum_DSM_14365 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Thauera_sp._MZ1T 1 1
Rubrivivax_gelatinosus_IL144 1 1
Leptothrix_cholodnii_SP-6 2 2
Nitrosospira_multiformis_ATCC_25196 2 1
Nitrosomonas_europaea_ATCC_19718 2 1
Pseudovibrio_sp._FO-BEG1 2 2
Rhodobacter_capsulatus_SB_1003 1 1
Paracoccus_denitrificans_PD1222 1 1
Azospirillum_lipoferum_4B 2 2
Azospirillum_sp._B510 1 1
Azospirillum_brasilense_Sp245 3 3
Vibrio_sp._Ex25 2 2
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_splendidus_LGP32 1 1
Vibrio_anguillarum_775 2 2
Vibrio_furnissii_NCTC_11218 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 1 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_denitrificans_OS217 1 1
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_amazonensis_SB2B 1 1
Shewanella_violacea_DSS12 2 2
Shewanella_putrefaciens_CN-32 1 1
Colwellia_psychrerythraea_34H 1 1
Pseudoalteromonas_sp._SM9913 1 1
Kangiella_koreensis_DSM_16069 4 4
Methylomonas_methanica_MC09 2 2
Rhodanobacter_denitrificans 2 1
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Allochromatium_vinosum_DSM_180 1 1
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_halophilus_Nc4 1 1
Nitrosococcus_oceani_ATCC_19707 1 1
Dickeya_zeae_Ech1591 1 1
Klebsiella_oxytoca_E718 1 1
Pseudomonas_sp._TKP 1 1
Pseudomonas_fluorescens_SBW25 1 1
Methanosaeta_harundinacea_6Ac 3 2
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Aciduliprofundum_boonei_T469 1 1

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Strains
Genome     Number   Proteins
Trypanosoma_brucei_Lister_427_v4.1 1 1
Chamaesiphon_minutus_PCC_6605 1 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Dactylococcopsis_salina_PCC_8305 11 7
Synechococcus_sp._CC9605 1 1
Synechococcus_sp._WH_8102 2 1
Crinalium_epipsammum_PCC_9333 1 1
Oscillatoria_nigro-viridis_PCC_7112 7 6
Oscillatoria_acuminata_PCC_6304 17 8
Arthrospira_platensis_NIES-39 40 15
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7424 1 1
Cyanothece_sp._ATCC_51142 1 1
Cyanobacterium_aponinum_PCC_10605 1 1
Cyanobacterium_stanieri_PCC_7202 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 5 3
Stanieria_cyanosphaera_PCC_7437 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 3 3
Cylindrospermum_stagnale_PCC_7417 2 1
Anabaena_cylindrica_PCC_7122 5 4
Thermus_thermophilus_JL-18 1 1
Thermus_thermophilus_HB8 1 1
Clostridium_thermocellum_DSM_1313 3 1
Roseburia_intestinalis_XB6B4 6 2
Clostridium_sp._SY8519 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 3 3
Clostridium_tetani_genome_12124569 3 2
Clostridium_perfringens_SM101 2 1
Clostridium_perfringens_str._13 2 1
Clostridium_botulinum_H04402_065 5 2
Clostridium_botulinum_BKT015925 2 1
Clostridium_botulinum_F_str._230613 2 1
Clostridium_botulinum_F_str._Langeland 5 2
Clostridium_botulinum_E3_str._Alaska_E43 3 1
Clostridium_botulinum_B1_str._Okra 5 2
Clostridium_botulinum_Ba4_str._657 4 2
Clostridium_botulinum_A2_str._Kyoto 5 2
Clostridium_botulinum_A3_str._Loch_Maree 5 2
Clostridium_botulinum_A_str._Hall 3 1
Clostridium_botulinum_A_str._ATCC_19397 3 1
Thermoanaerobacter_sp._X513 1 1
Lactobacillus_amylovorus_GRL_1112 1 1
Lactobacillus_helveticus_R0052 1 1
Lactobacillus_helveticus_H10 1 1
Lactobacillus_helveticus_CNRZ32 1 1
Lactobacillus_acidophilus_La-14 1 1
Lactobacillus_acidophilus_NCFM 1 1
Streptococcus_agalactiae_ILRI112 1 1
Streptococcus_agalactiae_ILRI005 1 1
Streptococcus_agalactiae_09mas018883 1 1
Streptococcus_agalactiae_SA20-06 1 1
Streptococcus_agalactiae_GD201008-001 1 1
Streptococcus_agalactiae_NEM316 1 1
Streptococcus_agalactiae_2603V/R 1 1
Thermobacillus_composti_KWC4 2 1
Paenibacillus_mucilaginosus_KNP414 2 1
Paenibacillus_mucilaginosus_K02 2 1
Paenibacillus_larvae_subsp._larvae_DSM_25430 6 4
Paenibacillus_polymyxa_CR1 3 3
Paenibacillus_polymyxa_SC2 3 3
Paenibacillus_polymyxa_E681 3 3
Geobacillus_sp._Y4.1MC1 1 1
Bacillus_licheniformis_9945A 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1 1
Bacillus_toyonensis_BCT-7112 4 4
Bacillus_thuringiensis_HD-771 3 3
Bacillus_thuringiensis_HD-789 3 3
Bacillus_thuringiensis_MC28 4 4
Bacillus_thuringiensis_serovar_chinensis_CT-43 4 4
Bacillus_thuringiensis_YBT-1518 7 7
Bacillus_thuringiensis_Bt407 5 5
Bacillus_thuringiensis_serovar_konkukian_str._97-27 3 3
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 5 5
Bacillus_thuringiensis_BMB171 5 5
Bacillus_thuringiensis_serovar_finitimus_YBT-020 3 3
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 6 6
Bacillus_cereus_FRI-35 3 3
Bacillus_cereus_biovar_anthracis_str._CI 3 3
Bacillus_cereus_AH820 3 3
Bacillus_cereus_AH187 2 2
Bacillus_cereus_B4264 4 4
Bacillus_cereus_G9842 3 3
Bacillus_cereus_Q1 2 2
Bacillus_cereus_F837/76 3 3
Bacillus_cereus_NC7401 2 2
Bacillus_cereus_E33L 4 4
Bacillus_cereus_ATCC_14579 5 5
Bacillus_cereus_ATCC_10987 3 3
Bacillus_anthracis_str._H9401 4 4
Bacillus_anthracis_str._CDC_684 4 4
Bacillus_anthracis_str._'Ames_Ancestor' 4 4
Bacillus_anthracis_str._Sterne 4 4
Bacillus_anthracis_str._Ames 4 4
Bacillus_coagulans_36D1 4 1
Prevotella_dentalis_DSM_3688 6 1
Riemerella_anatipestifer_RA-CH-2 1 1
Riemerella_anatipestifer_RA-CH-1 1 1
Riemerella_anatipestifer_RA-GD 1 1
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1 1
Singulisphaera_acidiphila_DSM_18658 2 2
Brachyspira_pilosicoli_WesB 1 1
Brachyspira_pilosicoli_B2904 1 1
Brachyspira_pilosicoli_P43/6/78 2 1
Spirochaeta_thermophila_DSM_6578 1 1
Sorangium_cellulosum_So0157-2 1 1
Anaeromyxobacter_sp._K 1 1
Myxococcus_stipitatus_DSM_14675 2 2
Variovorax_paradoxus_B4 1 1
Paracoccus_aminophilus_JCM_7686 2 2
Bradyrhizobium_oligotrophicum_S58 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 3 3
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1
Vibrio_anguillarum_Listonella_anguillarum_M3 2 2
Vibrio_nigripulchritudo_VibrioScope 2 2
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS223 1 1
Shewanella_baltica_OS195 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 5 2
Klebsiella_oxytoca_KCTC_1686 1 1
Archaeoglobus_sulfaticallidus_PM70-1 1 1

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Others
Genome     Number   Proteins
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 19 16
PDB_chains_(SCOP_1.75)_(PDB) 2 2
STRING_v9.0.5_(STRING) 366 226
Uniprot_2018_03_genome 7311 5745
NCBI_2017_08_genome 12196 10172
Protozoadb_2010_08_(Protozoadb) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 18 17
TargetDB__(Targets) 30 21
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 49 49
NCBI_viral_sequences_(Viral) 1 1

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