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Domain combinations for Ran binding protein zinc finger-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Ran binding protein zinc finger-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   105 81
Pan_troglodytes_76_2.1.4   (Chimpanzee)   32 20
Gorilla_gorilla_76_3.1   (Western gorilla)   46 31
Pongo_abelii_76_2   (Sumatran orangutan)   36 22
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   37 25
Papio_anubis_76   (Olive baboon)   35 21
Macaca_mulatta_76_1   (Rhesus monkey)   67 49
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   84 58
Otolemur_garnettii_76_3   (Small-eared galago)   35 23
Microcebus_murinus_76_1   (Gray mouse lemur)   23 14
Rattus_norvegicus_76_5.0   (Norway rat)   43 27
Mus_musculus_76_38   (House mouse)   68 51
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   27 15
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   35 23
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   29 21
Cavia_porcellus_76_3   (Domestic guinea pig)   30 22
Oryctolagus_cuniculus_76_2   (Rabbit)   33 23
Ochotona_princeps_76   (American pika)   27 15
Tupaia_belangeri_76   (Northern tree shrew)   13 10
Sus_scrofa_76_10.2   (Pig)   43 27
Bos_taurus_76_3.1   (Cattle)   34 21
Ovis_aries_76_3.1   (Sheep)   36 28
Vicugna_pacos_76_1   (Alpaca)   21 13
Tursiops_truncatus_76_1   (Bottlenose dolphin)   27 19
Mustela_putorius_furo_76_1.0   (Domestic ferret)   32 21
Ailuropoda_melanoleuca_76_1   (Giant panda)   38 25
Canis_familiaris_76_3.1   (Dog)   58 35
Felis_catus_76_6.2   (Domestic cat)   29 20
Equus_caballus_76_2   (Horse)   37 24
Myotis_lucifugus_76_2.0   (Little brown bat)   35 22
Pteropus_vampyrus_76_1   (Large flying fox)   26 17
Sorex_araneus_76_1   (European shrew)   21 16
Erinaceus_europaeus_76   (Western European hedgehog)   25 18
Procavia_capensis_76_1   (Cape rock hyrax)   25 15
Loxodonta_africana_76_3   (African savanna elephant)   42 28
Echinops_telfairi_76   (Small Madagascar hedgehog)   30 21
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   36 24
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   37 18
Macropus_eugenii_76_1.0   (Tammar wallaby)   20 13
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   44 29
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   32 23
Ornithorhynchus_anatinus_76_5   (Platypus)   32 17
Saccoglossus_kowalevskii_v3.0 31 18
Petromyzon_marinus_76_7.0   (Sea lamprey)   26 16
Meleagris_gallopavo_76_2   (Turkey)   33 19
Gallus_gallus_76_4   (Chicken)   30 19
Anas_platyrhynchos_76_1.0   (Mallard)   19 15
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   24 17
Ficedula_albicollis_76_1.0   (Collared flycatcher)   25 16
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   27 17
Anolis_carolinensis_76_2.0   (Green anole)   34 22
Xenopus_laevis_   (African clawed frog)   76 54
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   37 25
Latimeria_chalumnae_76_1   (Coelacanth)   42 28
Lepisosteus_oculatus_76   (Spotted gar)   43 26
Gadus_morhua_76_1   (Atlantic cod)   33 26
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   34 28
Takifugu_rubripes_76_4   (Torafugu)   107 82
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   43 32
Oryzias_latipes_76_1   (Japanese medaka)   37 25
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   36 24
Poecilia_formosa_76   (Amazon molly)   29 21
Oreochromis_niloticus_76_1.0   (Nile tilapia)   58 40
Astyanax_mexicanus_76   (Mexican tetra)   28 21
Danio_rerio_76_9   (Zebrafish)   47 37
Oikopleura_dioica 4 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3 2
Ciona_intestinalis_76   (Vase tunicate)   13 8
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   29 16
Adineta_vaga 22 16
Octopus_bimaculoides_280 30 20
Crassostrea_gigas_22   (Pacific oyster)   22 15
Lottia_gigantea_   (Owl limpet)   17 13
Helobdella_robusta_ 11 9
Capitella_sp._I_ 14 10
Danaus_plexippus_OGS1.0   (Monarch butterfly)   14 10
Heliconius_melpomene_   (Postman butterfly)   11 8
Bombyx_mori_   (Domestic silkworm)   10 9
Nasonia_vitripennis_   (Jewel wasp)   15 9
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   28 21
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   15 10
Linepithema_humile_v1.1   (Argentine ant)   15 10
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   15 11
Solenopsis_invicta_v.2.2.3   (Red fire ant)   15 8
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   16 10
Atta_cephalotes_v1.1 17 10
Camponotus_floridanus_v3.3   (Florida carpenter ant)   17 11
Lucilia_cuprina   (Australian sheep blowfly)   15 9
Drosophila_grimshawi_1.3 18 12
Drosophila_willistoni_1.3 21 15
Drosophila_pseudoobscura_2.13 14 9
Drosophila_persimilis_1.3 16 12
Drosophila_suzukii 15 9
Drosophila_yakuba_1.3 18 11
Drosophila_simulans_1.3 11 9
Drosophila_sechellia_1.3 14 11
Drosophila_melanogaster_76_5   (Fruit fly)   46 28
Drosophila_erecta_1.3 20 12
Drosophila_ananassae_1.3 18 12
Drosophila_virilis_1.2 15 11
Drosophila_mojavensis_1.3 15 11
Megaselia_scalaris_22 7 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   17 11
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   17 12
Anopheles_darlingi_22   (American malaria mosquito)   11 7
Anopheles_gambiae_49_3j   (African malaria mosquito)   16 13
Tribolium_castaneum_3.0   (Red flour beetle)   22 13
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   16 10
Acyrthosiphon_pisum_   (Pea aphid)   12 9
Rhodnius_prolixus_22 15 14
Daphnia_pulex_   (Common water flea)   30 28
Strigamia_maritima_22 17 13
Sarcoptes_scabiei 10 8
Tetranychus_urticae_   (Two-spotted spider mite)   11 11
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   14 10
Pristionchus_pacificus_ 9 7
Meloidogyne_incognita_   (Southern root-knot nematode)   10 8
Meloidogyne_hapla_ 8 5
Onchocerca_volvulus_22 7 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   13 9
Caenorhabditis_japonica_ 7 6
Caenorhabditis_brenneri_ 8 7
Caenorhabditis_remanei_ 7 6
Caenorhabditis_elegans_76_235   (Roundworm)   16 15
Caenorhabditis_briggsae_2 7 6
Trichinella_spiralis_22 3 3
Hymenolepis_microstoma_ 7 5
Echinococcus_multilocularis_ 10 7
Echinococcus_granulosus_ 11 7
Taenia_solium_   (Pork tapeworm)   12 7
Schistosoma_mansoni_ 13 11
Mnemiopsis_leidyi   (Sea walnut)   48 20
Thelohanellus_kitauei 3 2
Acropora_digitifera_v1.0 13 10
Nematostella_vectensis_1.0   (Starlet sea anemone)   16 12
Hydra_vulgaris 13 8
Amphimedon_queenslandica 26 16
Trichoplax_adhaerens_ 6 6
Proterospongia_sp._ATCC_50818_ 3 2
Monosiga_brevicollis_ 5 5
Sphaeroforma_arctica_JP610_ 12 6
Capsaspora_owczarzaki_ATCC_30864_ 9 5
Conidiobolus_coronatus_NRRL28638_v1.0 10 4
Mortierella_verticillata_NRRL_6337_ 10 6
Phycomyces_blakesleeanus_ 7 5
Rhizopus_oryzae_RA_99-880_ 10 6
Mucor_circinelloides_ 8 4
Rhizomucor_miehei_CAU432_ 10 7
Sporisorium_reilianum_22 2 2
Ustilago_maydis_ 4 3
Mixia_osmundae_IAM_14324_v1.0 3 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1 1
Melampsora_laricis-populina_ 1 1
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 3 3
Wallemia_sebi_v1.0 3 2
Sphaerobolus_stellatus_v1.0 6 3
Piloderma_croceum_F_1598_v1.0 3 2
Serpula_lacrymans_var._lacrymans_S7.9_ 3 2
Coniophora_puteana 5 4
Hydnomerulius_pinastri_v2.0 3 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 3 2
Pisolithus_microcarpus_441_v1.0 4 3
Pisolithus_tinctorius_Marx_270_v1.0 3 3
Scleroderma_citrinum_Foug_A_v1.0 2 2
Coprinopsis_cinerea_okayama7_130_v3 4 3
Pleurotus_ostreatus_   (Oyster mushroom)   3 2
Amanita_thiersii_Skay4041_v1.0 4 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3 2
Galerina_marginata_v1.0 4 3
Hebeloma_cylindrosporum_h7_v2.0 5 3
Laccaria_bicolor_S238N-H82_ 5 5
Agaricus_bisporus_var._bisporus_ 4 3
Schizophyllum_commune_ 4 3
Stereum_hirsutum_FP-91666_SS1__v1.0 4 3
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 5 4
Punctularia_strigosozonata_v1.0 5 3
Sebacina_vermifera_MAFF_305830_v1.0 1 1
Fomitiporia_mediterranea_v1.0 3 2
Tulasnella_calospora_AL13/4D_v1.0 5 3
Postia_placenta_ 3 2
Wolfiporia_cocos_MD-104_SS10__v1.0 15 14
Fomitopsis_pinicolav1.0 4 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3 2
Phanerochaete_chrysosporium_RP-78_2.1 1 1
Dichomitus_squalens 5 3
Trametes_versicolor_v1.0 5 3
Tremella_mesenterica_   (Witches' butter)   4 3
Daldinia_eschscholzii_EC12_v1.0 6 5
Apiospora_montagnei_NRRL_25634_v1.0 5 3
Magnaporthe_poae_ATCC_64411_22 3 2
Magnaporthe_grisea_70-15_ 5 4
Podospora_anserina_ 3 2
Sporotrichum_thermophile_ATCC_42464_ 4 3
Thielavia_terrestris_NRRL_8126_ 4 3
Chaetomium_globosum_CBS_148.51_ 3 2
Neurospora_tetrasperma_ 4 3
Neurospora_discreta_FGSC_8579_ 3 2
Neurospora_crassa_OR74A_ 4 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   4 3
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 5 4
Acremonium_alcalophilumv_1.0 4 3
Glomerella_graminicola_22 4 3
Fusarium_graminearum_ 5 4
Nectria_haematococca_mpVI_ 5 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 5 3
Fusarium_verticillioides_7600_ 3 2
Trichoderma_asperellum_CBS_433.97_v1.0 5 3
Trichoderma_atroviride_ 4 3
Trichoderma_citrinoviride_v1.0 4 2
Trichoderma_reesei_1.2 4 2
Trichoderma_virens_Gv29-8_ 5 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 6 4
Trichoderma_harzianum_CBS_226.95_v1.0 5 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   7 5
Botrytis_cinerea_B05.10_ 5 4
Sclerotinia_sclerotiorum_ 3 2
Blumeria_graminis_22 3 2
Didymella_exigua_CBS_183.55_v1.0 4 3
Leptosphaeria_maculans_22 3 2
Setosphaeria_turcica_v1.0 4 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2 2
Cochliobolus_victoriae_FI3_v1.0 2 2
Cochliobolus_carbonum_26-R-13_v1.0 2 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   4 3
Alternaria_brassicicola_ 4 3
Cochliobolus_lunatus_m118_v2.0 3 3
Pyrenophora_teres_f._teres_22 5 4
Pyrenophora_tritici-repentis_ 4 3
Stagonospora_nodorum_ 5 4
Mycosphaerella_graminicola_IPO323_ 4 2
Zasmidium_cellare_ATCC_36951_v1.0 2 2
Dothistroma_septosporum 4 3
Septoria_musiva_v1.0 3 2
Mycosphaerella_fijiensis_CIRAD86_ 4 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4 2
Paracoccidioides_brasiliensis_Pb18_ 4 2
Coccidioides_posadasii_RMSCC_3488_ 5 3
Coccidioides_immitis_RS_ 5 3
Ajellomyces_dermatitidis_SLH14081_ 5 4
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 4 3
Microsporum_canis_CBS_113480_ 5 4
Trichophyton_equinum_CBS_127.97_ 5 4
Trichophyton_verrucosum_HKI_0517_ 4 3
Arthroderma_benhamiae_CBS_112371_ 4 3
Trichophyton_tonsurans_CBS_112818_ 5 4
Trichophyton_rubrum_CBS_118892_ 5 4
Uncinocarpus_reesii_1704_ 3 2
Aspergillus_zonatus_v1.0 5 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 5 3
Penicillium_chrysogenum_v1.0 5 3
Aspergillus_acidus_v1.0 4 3
Aspergillus_fumigatus_Af293 3 2
Aspergillus_brasiliensis_v1.0 4 3
Aspergillus_nidulans_FGSC_A4_ 4 3
Aspergillus_sydowii_v1.0 3 2
Aspergillus_versicolor_v1.0 4 3
Aspergillus_glaucus 4 3
Aspergillus_carbonarius_ITEM_5010_ 3 2
Neosartorya_fischeri_NRRL_181_ 3 2
Aspergillus_terreus_NIH2624_ 5 3
Aspergillus_tubingensis_v1.0 4 3
Aspergillus_wentii_v1.0 4 3
Aspergillus_oryzae_RIB40_ 4 2
Aspergillus_niger_22 4 3
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 5 3
Aspergillus_clavatus_NRRL_1_ 5 3
Penicillium_marneffei_ATCC_18224_ 5 4
Tuber_melanosporum_Mel28_22 5 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   5 4
Hansenula_polymorpha_v2.0 2 1
Dekkera_bruxellensis_CBS_2499_v2.0 3 2
Pichia_membranifaciensv1.0 3 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4 2
Candida_dubliniensis_CD36_ 3 2
Candida_tropicalis_MYA-3404_ 3 2
Candida_parapsilosis_ 2 1
Candida_albicans_SC5314 3 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 4 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4 2
Pichia_stipitis_CBS_6054_ 3 2
Candida_guilliermondii_ATCC_6260_ 4 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 2
Debaromyces_hansenii 3 2
Wickerhamomyces_anomalus 4 2
Pichia_pastoris_GS115_ 3 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 1
Yarrowia_lipolytica_CLIB122 4 2
Candida_lusitaniae_ATCC_42720_ 4 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 2
Vanderwaltozyma_polyspora_DSM_70294_ 4 2
Candida_glabrata_CBS138 4 2
Kluyveromyces_thermotolerans_CBS_6340 4 2
Lachancea_kluyveri_ 3 2
Kluyveromyces_waltii 3 2
Ashbya_gossypii_ATCC_10895_ 3 2
Zygosaccharomyces_rouxii_ 3 2
Saccharomyces_mikatae_MIT 2 1
Saccharomyces_paradoxus_MIT 3 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   3 2
Saccharomyces_bayanus_MIT 3 2
Kluyveromyces_lactis 3 2
Schizosaccharomyces_cryophilus_OY26_22 4 2
Schizosaccharomyces_octosporus_yFS286_ 5 3
Schizosaccharomyces_japonicus_yFS275_ 5 3
Schizosaccharomyces_pombe   (Fission yeast)   3 1
Catenaria_anguillulae_PL171_v1.0 16 7
Allomyces_macrogynus_ATCC_38327_ 16 10
Spizellomyces_punctatus_DAOM_BR117_ 9 3
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 1 1
Selaginella_moellendorffii_ 48 29
Pinus_taeda   (Loblolly pine)   13 11
Picea_abies   (Norway spruce)   19 14
Eucalyptus_grandis_v201   (Rose gum)   77 40
Theobroma_cacao_B97-61/B2_v1   (Cacao)   38 20
Gossypium_raimondii_v221 169 99
Citrus_clementina_v165 88 64
Citrus_sinensis_v154   (Sweet orange)   73 45
Thellungiella_halophila_v173 36 20
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   52 29
Capsella_rubella_v183 40 20
Arabidopsis_lyrata_   (Lyrate rockcress)   34 18
Arabidopsis_thaliana_10   (Thale cress)   45 26
Carica_papaya_   (Papaya)   30 17
Medicago_truncatula_   (Barrel medic)   98 66
Phaseolus_vulgaris_v186   (French bean)   63 28
Glycine_max_v109   (Soybean)   107 50
Cucumis_sativus_v122   (Cucumber)   68 41
Fragaria_vesca_   (Wild strawberry)   32 18
Malus_domestica_v196   (Apple)   67 40
Prunus_persica_v139   (Peach)   35 20
Linum_usitatissimum_v200   (Flax)   59 31
Manihot_esculenta_v147   (Cassava)   55 26
Populus_trichocarpa_v156   (Black cottonwood)   71 37
Vitis_vinifera_   (Wine grape)   37 19
Mimulus_guttatus_v140   (Spotted monkey flower)   40 21
Solanum_lycopersicum_v.2.3   (Tomato)   33 20
Solanum_tuberosum_   (Potato)   59 31
Actinidia_chinensis_Hongyang_ 45 31
Aquilegia_coerulea_v195 91 51
Triticum_urartu_22 26 15
Triticum_aestivum_22   (Bread wheat)   92 54
Aegilops_tauschii_22 26 16
Brachypodium_distachyon_   (Stiff brome)   59 31
Oryza_barthii_22   (African wild rice)   46 32
Oryza_meridionalis_22 46 34
Oryza_glumaepatula_22 60 38
Oryza_glaberrima   (African rice)   34 19
Oryza_punctata_22 69 46
Oryza_nivara_22 47 28
Oryza_brachyantha_22   (Malo sina)   33 21
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   97 50
Oryza_sativa_v193   (Rice)   97 50
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   47 28
Panicum_virgatum_v202   (Switchgrass)   84 50
Setaria_italica_v164   (Foxtail millet)   55 31
Zea_mays_subsp._mays_   (Maize)   138 68
Zea_mays_v181   (Maize)   173 84
Sorghum_bicolor_   (Sorghum)   31 17
Musa_balbisiana   (Balbis banana)   66 32
Musa_acuminata_22   (Wild Malaysian banana)   77 36
Amborella_trichopoda_22 23 15
Physcomitrella_patens 24 18
Coccomyxa_subellipsoidea_sp._C-169_v2 8 5
Asterochloris_sp._Cgr/DA1pho_v1.0 5 2
Chlorella_variabilis_sp._NC64A_ 15 7
Chlorella_vulgaris_ 7 4
Volvox_carteri_f._nagariensis_ 3 2
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 7 6
Ostreococcus_sp._RCC809_ 7 5
Ostreococcus_lucimarinus_CCE9901_ 4 2
Ostreococcus_tauri_ 6 4
Bathycoccus_prasinos_ 6 4
Micromonas_sp._RCC299_ 25 18
Micromonas_pusilla_CCMP1545_v3.0 24 18
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 13 9
Bigelowiella_natans_CCMP2755_22 50 37
Cyanophora_paradoxa_ 1 1
Leishmania_mexicana_2.4 15 7
Leishmania_major_strain_Friedlin_ 14 7
Leishmania_infantum_JPCM5_2.4 17 9
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 16 8
Trypanosoma_vivax_ 13 9
Trypanosoma_cruzi_strain_CL_Brener 10 5
Trypanosoma_congolense_2.4 15 8
Trypanosoma_brucei_gambiense_v4.1 15 6
Trypanosoma_brucei_TREU927_v4.1 15 6
Ectocarpus_siliculosus 28 20
Aureococcus_anophagefferens_ 11 7
Albugo_laibachii_22 14 13
Pythium_iwayamai_DAOM_BR242034_22 19 17
Pythium_arrhenomanes_ATCC_12531_22 17 15
Pythium_ultimum_v1.7-2 20 19
Pythium_aphanidermatum_DAOM_BR444_22 16 16
Pythium_irregulare_DAOM_BR486_22 19 19
Pythium_vexans_DAOM_BR484_22 24 21
Phytophthora_ramorum_1.1   (Sudden oak death agent)   15 13
Phytophthora_sojae_1.1 19 17
Phytophthora_infestans_T30-4_ 22 19
Phytophthora_capsici_ 11 9
Hyaloperonospora_arabidopsidis_22 17 12
Phaeodactylum_tricornutumCCAP_1055/1 2 2
Fragilariopsis_cylindrus 8 8
Thalassiosira_pseudonana_CCMP1335 8 8
Perkinsus_marinus_ATCC_50983_ 24 17
Paramecium_tetraurelia_ 24 22
Tetrahymena_thermophila_SB210_1_ 8 7
Ichthyophthirius_multifiliis_strain_G5_ 2 2
Cryptosporidium_hominis 2 2
Cryptosporidium_muris 2 2
Cryptosporidium_parvum_Iowa_II 2 2
Neospora_caninum 6 4
Toxoplasma_gondii_VEG 6 4
Toxoplasma_gondii_ME49 6 4
Toxoplasma_gondii_GT1 6 4
Babesia_bovis_T2Bo_ 6 4
Theileria_parva__ 2 2
Theileria_annulata 3 2
Plasmodium_falciparum_3D7_ 4 3
Plasmodium_vivax_SaI-1_7.0 4 3
Plasmodium_knowlesi_strain_H_ 4 3
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 4 3
Plasmodium_berghei_ANKA_ 3 2
Symbiodinium_minutum_clade_B1_v1.2 82 48
Naegleria_gruberi_ 2 2
Guillardia_theta_CCMP2712_v1.0_ 16 10
Emiliania_huxleyi_CCMP1516_ 57 44
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1 1
Eubacterium_siraeum 1 1
Coprococcus_sp._ART55/1 1 1
Candidatus_Protochlamydia_amoebophila_UWE25 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Shewanella_loihica_PV-4 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Colwellia_psychrerythraea_34H 1 1
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_haloplanktis_TAC125 1 1
Glaciecola_nitratireducens_FR1064 1 1
Thermofilum_sp._1910b 1 1
Methanohalobium_evestigatum_Z-7303 1 1
Natronomonas_pharaonis_DSM_2160 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   64 45
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   42 24
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   18 12
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   11 8
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   14 13
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 4 3
Paracoccidioides_brasiliensis_Pb03_ 3 2
Coccidioides_posadasii_str._Silveira_ 5 3
Coccidioides_immitis_RMSCC_3703_ 4 2
Coccidioides_immitis_RMSCC_2394_ 5 3
Coccidioides_immitis_H538.4_ 4 2
Ajellomyces_dermatitidis_ER-3_ 5 4
Histoplasma_capsulatum_H143 4 4
Histoplasma_capsulatum_H88 5 4
Histoplasma_capsulatum_G186AR 5 4
Aspergillus_fumigatus_A1163_ 3 2
Candida_albicans_WO-1_ 3 2
Saccharomyces_cerevisiae_UC5 3 2
Saccharomyces_cerevisiae_PW5 3 2
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 3 2
Saccharomyces_cerevisiae_FostersB 2 2
Saccharomyces_cerevisiae_VL3 3 2
Saccharomyces_cerevisiae_Vin13 3 2
Saccharomyces_cerevisiae_LalvinQA23 3 2
Saccharomyces_cerevisiae_Sigma1278b 3 2
Saccharomyces_cerevisiae_W303 3 2
Saccharomyces_cerevisiae_JAY291 3 2
Saccharomyces_cerevisiae_AWRI1631 3 2
Saccharomyces_cerevisiae_CLIB215 1 1
Saccharomyces_cerevisiae_Y10 1 1
Saccharomyces_cerevisiae_YJM789_ 3 2
Saccharomyces_cerevisiae_YJM789 3 2
Saccharomyces_cerevisiae_RM11-1a 2 2
Saccharomyces_cerevisiae_RM11-1a_ 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3 2
Schizosaccharomyces_pombe_972h-_ 3 1
Batrachochytrium_dendrobatidis_JEL423_ 9 5
Batrachochytrium_dendrobatidis_JAM81_ 10 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   34 19
Hordeum_vulgare_22   (Domesticated barley)   116 60
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   34 19
Trypanosoma_brucei_Lister_427_v4.1 15 6
Neospora_caninum_Nc-Liverpool_6.2 6 4
Plasmodium_falciparum_HB3_ 3 3
Plasmodium_falciparum_Dd2_ 1 1
Gordonibacter_pamelaeae_7-10-1-b 1 1
Eubacterium_siraeum_V10Sc8a 1 1
Desulfitobacterium_hafniense_DCB-2 2 2
Alteromonas_macleodii_str._'English_Channel_673' 1 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1 1
Alteromonas_macleodii_ATCC_27126 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   35 22
Pan_troglodytes_69_2.1.4   (Chimpanzee)   30 19
Gorilla_gorilla_69_3.1   (Western gorilla)   29 21
Pongo_abelii_69_2   (Sumatran orangutan)   35 21
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   32 21
Macaca_mulatta_69_1   (Rhesus monkey)   36 22
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   46 31
Otolemur_garnettii_69_3   (Small-eared galago)   34 22
Microcebus_murinus_69_1   (Gray mouse lemur)   23 14
Rattus_norvegicus_69_3.4   (Norway rat)   38 26
Mus_musculus_69_38   (House mouse)   34 23
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   27 15
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   34 22
Cavia_porcellus_69_3   (Domestic guinea pig)   30 22
Oryctolagus_cuniculus_69_2   (Rabbit)   33 23
Ochotona_princeps_69   (American pika)   27 15
Tupaia_belangeri_69   (Northern tree shrew)   13 10
Sus_scrofa_69_10.2   (Pig)   34 21
Bos_taurus_69_3.1   (Cattle)   30 20
Vicugna_pacos_69_1   (Alpaca)   21 13
Tursiops_truncatus_69_1   (Bottlenose dolphin)   27 19
Mustela_putorius_furo_69_1.0   (Domestic ferret)   32 21
Ailuropoda_melanoleuca_69_1   (Giant panda)   37 24
Canis_familiaris_69_3.1   (Dog)   39 26
Felis_catus_69   (Domestic cat)   18 12
Equus_caballus_69_2   (Horse)   30 20
Myotis_lucifugus_69_2.0   (Little brown bat)   35 22
Pteropus_vampyrus_69_1   (Large flying fox)   26 17
Sorex_araneus_69_1   (European shrew)   21 16
Erinaceus_europaeus_69   (Western European hedgehog)   25 18
Procavia_capensis_69_1   (Cape rock hyrax)   25 15
Loxodonta_africana_69_3   (African savanna elephant)   33 22
Echinops_telfairi_69   (Small Madagascar hedgehog)   30 21
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   20 13
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   37 18
Macropus_eugenii_69_1.0   (Tammar wallaby)   20 13
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   31 20
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   31 22
Ornithorhynchus_anatinus_69_5   (Platypus)   27 15
Petromyzon_marinus_69_7.0   (Sea lamprey)   18 12
Meleagris_gallopavo_69_2   (Turkey)   22 14
Gallus_gallus_69_2   (Chicken)   19 14
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   22 15
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   25 15
Anolis_carolinensis_69_2.0   (Green anole)   32 21
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   27 18
Latimeria_chalumnae_69_1   (Coelacanth)   36 22
Gadus_morhua_69_1   (Atlantic cod)   29 22
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   30 24
Takifugu_rubripes_69_4   (Torafugu)   32 23
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   34 24
Oryzias_latipes_69_1   (Japanese medaka)   37 25
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   36 24
Oreochromis_niloticus_69_1.0   (Nile tilapia)   39 26
Danio_rerio_69_9   (Zebrafish)   33 24
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3 2
Ciona_intestinalis_69   (Vase tunicate)   12 7
Drosophila_melanogaster_69_5   (Fruit fly)   19 12
Caenorhabditis_elegans_69_215   (Roundworm)   8 7
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3 2
Arabidopsis_thaliana_10   (Thale cress)   34 18

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   107 88
Homo_sapiens__(NCBI_version)   (Human)   52 38
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   34 23
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   10 8
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   11 8
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   9 6
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   6 3
Lotus_japonicus__(Early_assembly) 24 16
Malus_x_domestica_(Duplicate)   (Apple)   67 40
Ricinus_communis__(Early_assembly)   (Castor bean)   35 20
Nicotiana_benthamiana_0.4.4_(Early_draft) 63 39
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   32 19
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   33 20
Phoenix_dactylifera__(Early_draft)   (Date palm)   21 13
Protozoadb_2010_08_(Protozoadb) 157 95
Protein_Data_Bank_(all_PDB_sequenc) 64 60
TargetDB__(Targets) 66 48
STRING_v9.0.5_(STRING) 1756 1160
Uniprot_2018_03_genome 22767 15109
NCBI_2017_08_genome 28308 18175
PDB_chains_(SCOP_1.75)_(PDB) 7 7
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 74 74

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