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Domain combinations for CCCH zinc finger superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a CCCH zinc finger domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   152 112
Pan_troglodytes_76_2.1.4   (Chimpanzee)   50 32
Gorilla_gorilla_76_3.1   (Western gorilla)   70 45
Pongo_abelii_76_2   (Sumatran orangutan)   47 31
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   53 36
Papio_anubis_76   (Olive baboon)   62 36
Macaca_mulatta_76_1   (Rhesus monkey)   63 47
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   96 63
Otolemur_garnettii_76_3   (Small-eared galago)   46 31
Microcebus_murinus_76_1   (Gray mouse lemur)   25 15
Rattus_norvegicus_76_5.0   (Norway rat)   59 37
Mus_musculus_76_38   (House mouse)   97 68
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   29 21
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   45 28
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   40 29
Cavia_porcellus_76_3   (Domestic guinea pig)   46 28
Oryctolagus_cuniculus_76_2   (Rabbit)   47 31
Ochotona_princeps_76   (American pika)   26 16
Tupaia_belangeri_76   (Northern tree shrew)   25 19
Sus_scrofa_76_10.2   (Pig)   47 33
Bos_taurus_76_3.1   (Cattle)   46 29
Ovis_aries_76_3.1   (Sheep)   43 30
Vicugna_pacos_76_1   (Alpaca)   22 16
Tursiops_truncatus_76_1   (Bottlenose dolphin)   33 24
Mustela_putorius_furo_76_1.0   (Domestic ferret)   47 30
Ailuropoda_melanoleuca_76_1   (Giant panda)   44 31
Canis_familiaris_76_3.1   (Dog)   57 38
Felis_catus_76_6.2   (Domestic cat)   45 31
Equus_caballus_76_2   (Horse)   33 24
Myotis_lucifugus_76_2.0   (Little brown bat)   39 28
Pteropus_vampyrus_76_1   (Large flying fox)   38 24
Sorex_araneus_76_1   (European shrew)   23 16
Erinaceus_europaeus_76   (Western European hedgehog)   24 18
Procavia_capensis_76_1   (Cape rock hyrax)   38 26
Loxodonta_africana_76_3   (African savanna elephant)   54 34
Echinops_telfairi_76   (Small Madagascar hedgehog)   20 15
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   50 33
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   21 15
Macropus_eugenii_76_1.0   (Tammar wallaby)   25 18
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   35 26
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   39 28
Ornithorhynchus_anatinus_76_5   (Platypus)   36 26
Saccoglossus_kowalevskii_v3.0 33 30
Petromyzon_marinus_76_7.0   (Sea lamprey)   13 13
Meleagris_gallopavo_76_2   (Turkey)   26 21
Gallus_gallus_76_4   (Chicken)   26 19
Anas_platyrhynchos_76_1.0   (Mallard)   30 21
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   31 23
Ficedula_albicollis_76_1.0   (Collared flycatcher)   33 22
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   33 22
Anolis_carolinensis_76_2.0   (Green anole)   30 21
Xenopus_laevis_   (African clawed frog)   124 73
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   61 37
Latimeria_chalumnae_76_1   (Coelacanth)   55 41
Lepisosteus_oculatus_76   (Spotted gar)   50 35
Gadus_morhua_76_1   (Atlantic cod)   43 32
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   53 34
Takifugu_rubripes_76_4   (Torafugu)   133 91
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   54 37
Oryzias_latipes_76_1   (Japanese medaka)   46 33
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   53 34
Poecilia_formosa_76   (Amazon molly)   54 34
Oreochromis_niloticus_76_1.0   (Nile tilapia)   63 41
Astyanax_mexicanus_76   (Mexican tetra)   56 38
Danio_rerio_76_9   (Zebrafish)   97 67
Oikopleura_dioica 19 11
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   31 19
Ciona_intestinalis_76   (Vase tunicate)   24 15
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   24 19
Adineta_vaga 52 38
Octopus_bimaculoides_280 20 17
Crassostrea_gigas_22   (Pacific oyster)   20 17
Lottia_gigantea_   (Owl limpet)   29 21
Helobdella_robusta_ 23 17
Capitella_sp._I_ 32 20
Danaus_plexippus_OGS1.0   (Monarch butterfly)   19 14
Heliconius_melpomene_   (Postman butterfly)   19 14
Bombyx_mori_   (Domestic silkworm)   18 13
Nasonia_vitripennis_   (Jewel wasp)   18 12
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   44 32
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   20 14
Linepithema_humile_v1.1   (Argentine ant)   20 14
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   18 13
Solenopsis_invicta_v.2.2.3   (Red fire ant)   13 10
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   21 15
Atta_cephalotes_v1.1 20 14
Camponotus_floridanus_v3.3   (Florida carpenter ant)   22 16
Lucilia_cuprina   (Australian sheep blowfly)   16 14
Drosophila_grimshawi_1.3 16 14
Drosophila_willistoni_1.3 12 10
Drosophila_pseudoobscura_2.13 15 13
Drosophila_persimilis_1.3 14 12
Drosophila_suzukii 16 14
Drosophila_yakuba_1.3 14 12
Drosophila_simulans_1.3 11 10
Drosophila_sechellia_1.3 16 14
Drosophila_melanogaster_76_5   (Fruit fly)   35 31
Drosophila_erecta_1.3 15 13
Drosophila_ananassae_1.3 15 13
Drosophila_virilis_1.2 13 12
Drosophila_mojavensis_1.3 15 13
Megaselia_scalaris_22 6 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   20 18
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   16 12
Anopheles_darlingi_22   (American malaria mosquito)   13 10
Anopheles_gambiae_49_3j   (African malaria mosquito)   12 10
Tribolium_castaneum_3.0   (Red flour beetle)   18 14
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   14 11
Acyrthosiphon_pisum_   (Pea aphid)   16 12
Rhodnius_prolixus_22 11 10
Daphnia_pulex_   (Common water flea)   21 16
Strigamia_maritima_22 28 22
Sarcoptes_scabiei 21 16
Tetranychus_urticae_   (Two-spotted spider mite)   18 14
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   20 14
Pristionchus_pacificus_ 24 17
Meloidogyne_incognita_   (Southern root-knot nematode)   55 38
Meloidogyne_hapla_ 28 19
Onchocerca_volvulus_22 42 31
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   42 29
Caenorhabditis_japonica_ 27 19
Caenorhabditis_brenneri_ 36 25
Caenorhabditis_remanei_ 33 23
Caenorhabditis_elegans_76_235   (Roundworm)   60 39
Caenorhabditis_briggsae_2 40 29
Trichinella_spiralis_22 26 18
Hymenolepis_microstoma_ 16 12
Echinococcus_multilocularis_ 21 15
Echinococcus_granulosus_ 20 14
Taenia_solium_   (Pork tapeworm)   20 14
Schistosoma_mansoni_ 29 18
Mnemiopsis_leidyi   (Sea walnut)   17 13
Thelohanellus_kitauei 14 9
Acropora_digitifera_v1.0 23 20
Nematostella_vectensis_1.0   (Starlet sea anemone)   22 19
Hydra_vulgaris 22 18
Amphimedon_queenslandica 26 17
Trichoplax_adhaerens_ 10 8
Proterospongia_sp._ATCC_50818_ 20 13
Monosiga_brevicollis_ 14 10
Sphaeroforma_arctica_JP610_ 16 14
Capsaspora_owczarzaki_ATCC_30864_ 25 18
Conidiobolus_coronatus_NRRL28638_v1.0 16 11
Mortierella_verticillata_NRRL_6337_ 26 19
Phycomyces_blakesleeanus_ 31 19
Rhizopus_oryzae_RA_99-880_ 25 15
Mucor_circinelloides_ 22 15
Rhizomucor_miehei_CAU432_ 20 15
Malassezia_globosa_CBS_7966_ 12 10
Sporisorium_reilianum_22 13 11
Ustilago_maydis_ 12 9
Mixia_osmundae_IAM_14324_v1.0 12 9
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 13 11
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 8 7
Melampsora_laricis-populina_ 16 12
Rhodotorula_graminis_WP1_v1.0 10 8
Sporobolomyces_roseus_IAM_13481_ 10 8
Microbotryum_violaceum_22 13 10
Wallemia_sebi_v1.0 9 7
Sphaerobolus_stellatus_v1.0 19 13
Piloderma_croceum_F_1598_v1.0 20 16
Serpula_lacrymans_var._lacrymans_S7.9_ 16 12
Coniophora_puteana 18 14
Hydnomerulius_pinastri_v2.0 20 15
Paxillus_rubicundulus_Ve08.2h10_v1.0 22 17
Pisolithus_microcarpus_441_v1.0 29 16
Pisolithus_tinctorius_Marx_270_v1.0 41 20
Scleroderma_citrinum_Foug_A_v1.0 22 16
Coprinopsis_cinerea_okayama7_130_v3 17 14
Pleurotus_ostreatus_   (Oyster mushroom)   22 17
Amanita_thiersii_Skay4041_v1.0 17 15
Amanita_muscaria_Koide_v1.0   (Fly agaric)   24 18
Galerina_marginata_v1.0 23 16
Hebeloma_cylindrosporum_h7_v2.0 20 17
Laccaria_bicolor_S238N-H82_ 23 18
Agaricus_bisporus_var._bisporus_ 19 15
Schizophyllum_commune_ 19 14
Stereum_hirsutum_FP-91666_SS1__v1.0 18 15
Heterobasidion_annosum_ 15 12
Gloeophyllum_trabeumv1.0 17 13
Punctularia_strigosozonata_v1.0 16 13
Sebacina_vermifera_MAFF_305830_v1.0 22 18
Fomitiporia_mediterranea_v1.0 22 16
Tulasnella_calospora_AL13/4D_v1.0 30 21
Postia_placenta_ 21 17
Wolfiporia_cocos_MD-104_SS10__v1.0 19 14
Fomitopsis_pinicolav1.0 15 11
Fomitopsis_pinicola_FP-58527_SS1_v3.0 18 13
Phanerochaete_chrysosporium_RP-78_2.1 16 13
Dichomitus_squalens 23 16
Trametes_versicolor_v1.0 21 15
Tremella_mesenterica_   (Witches' butter)   8 8
Daldinia_eschscholzii_EC12_v1.0 15 13
Apiospora_montagnei_NRRL_25634_v1.0 18 15
Magnaporthe_poae_ATCC_64411_22 14 8
Magnaporthe_grisea_70-15_ 11 8
Podospora_anserina_ 15 11
Sporotrichum_thermophile_ATCC_42464_ 13 10
Thielavia_terrestris_NRRL_8126_ 15 12
Chaetomium_globosum_CBS_148.51_ 12 10
Neurospora_tetrasperma_ 12 10
Neurospora_discreta_FGSC_8579_ 12 10
Neurospora_crassa_OR74A_ 14 11
Cryphonectria_parasitica_   (Chestnut blight fungus)   12 9
Verticillium_albo-atrum_VaMs.102_ 9 7
Verticillium_dahliae_VdLs.17_ 12 9
Acremonium_alcalophilumv_1.0 13 10
Glomerella_graminicola_22 14 12
Fusarium_graminearum_ 12 10
Nectria_haematococca_mpVI_ 13 11
Fusarium_oxysporum_f._sp._lycopersici_4286_ 14 12
Fusarium_verticillioides_7600_ 13 10
Trichoderma_asperellum_CBS_433.97_v1.0 16 14
Trichoderma_atroviride_ 13 11
Trichoderma_citrinoviride_v1.0 14 12
Trichoderma_reesei_1.2 13 11
Trichoderma_virens_Gv29-8_ 15 11
Trichoderma_longibrachiatum_ATCC_18648_v1.0 14 12
Trichoderma_harzianum_CBS_226.95_v1.0 17 14
Amorphotheca_resinae_v1.0   (Creosote fungus)   19 13
Botrytis_cinerea_B05.10_ 18 11
Sclerotinia_sclerotiorum_ 11 10
Blumeria_graminis_22 11 8
Didymella_exigua_CBS_183.55_v1.0 11 10
Leptosphaeria_maculans_22 13 12
Setosphaeria_turcica_v1.0 13 11
Cochliobolus_miyabeanus_ATCC_44560_v1.0 11 10
Cochliobolus_victoriae_FI3_v1.0 11 10
Cochliobolus_carbonum_26-R-13_v1.0 11 10
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   9 8
Alternaria_brassicicola_ 10 9
Cochliobolus_lunatus_m118_v2.0 12 10
Pyrenophora_teres_f._teres_22 12 11
Pyrenophora_tritici-repentis_ 12 11
Stagonospora_nodorum_ 11 10
Mycosphaerella_graminicola_IPO323_ 11 10
Zasmidium_cellare_ATCC_36951_v1.0 17 13
Dothistroma_septosporum 11 10
Septoria_musiva_v1.0 14 11
Mycosphaerella_fijiensis_CIRAD86_ 11 10
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 9 9
Paracoccidioides_brasiliensis_Pb18_ 13 10
Coccidioides_posadasii_RMSCC_3488_ 13 10
Coccidioides_immitis_RS_ 14 11
Ajellomyces_dermatitidis_SLH14081_ 13 10
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 12 9
Microsporum_canis_CBS_113480_ 14 11
Trichophyton_equinum_CBS_127.97_ 12 9
Trichophyton_verrucosum_HKI_0517_ 9 7
Arthroderma_benhamiae_CBS_112371_ 10 8
Trichophyton_tonsurans_CBS_112818_ 10 8
Trichophyton_rubrum_CBS_118892_ 14 11
Uncinocarpus_reesii_1704_ 12 9
Aspergillus_zonatus_v1.0 12 10
Penicillium_chrysogenum_Wisconsin_54-1255_ 14 11
Penicillium_chrysogenum_v1.0 12 10
Aspergillus_acidus_v1.0 12 10
Aspergillus_fumigatus_Af293 13 9
Aspergillus_brasiliensis_v1.0 10 8
Aspergillus_nidulans_FGSC_A4_ 12 9
Aspergillus_sydowii_v1.0 12 9
Aspergillus_versicolor_v1.0 12 9
Aspergillus_glaucus 11 9
Aspergillus_carbonarius_ITEM_5010_ 10 7
Neosartorya_fischeri_NRRL_181_ 15 11
Aspergillus_terreus_NIH2624_ 12 9
Aspergillus_tubingensis_v1.0 10 8
Aspergillus_wentii_v1.0 12 9
Aspergillus_oryzae_RIB40_ 10 9
Aspergillus_niger_22 12 9
Aspergillus_niger_ATCC_1015_ 9 6
Aspergillus_flavus_NRRL3357_ 16 11
Aspergillus_clavatus_NRRL_1_ 13 9
Penicillium_marneffei_ATCC_18224_ 13 10
Tuber_melanosporum_Mel28_22 13 10
Tuber_melanosporum_Vittad_   (Perigord truffle)   13 10
Hansenula_polymorpha_v2.0 12 8
Dekkera_bruxellensis_CBS_2499_v2.0 9 7
Pichia_membranifaciensv1.0 12 10
Candida_tanzawaensis_NRRL_Y-17324__v1.0 11 8
Candida_dubliniensis_CD36_ 11 8
Candida_tropicalis_MYA-3404_ 10 8
Candida_parapsilosis_ 10 7
Candida_albicans_SC5314 10 8
Lodderomyces_elongisporus_NRRL_YB-4239_ 8 6
Babjeviella_inositovora_NRRL_Y-12698_v1.0 11 8
Pichia_stipitis_CBS_6054_ 11 8
Candida_guilliermondii_ATCC_6260_ 10 8
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 11 9
Debaromyces_hansenii 12 8
Wickerhamomyces_anomalus 13 9
Pichia_pastoris_GS115_ 12 8
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 9 7
Yarrowia_lipolytica_CLIB122 12 10
Candida_lusitaniae_ATCC_42720_ 13 9
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 13 9
Vanderwaltozyma_polyspora_DSM_70294_ 9 7
Candida_glabrata_CBS138 9 7
Kluyveromyces_thermotolerans_CBS_6340 8 7
Lachancea_kluyveri_ 10 7
Kluyveromyces_waltii 8 6
Ashbya_gossypii_ATCC_10895_ 9 7
Zygosaccharomyces_rouxii_ 8 7
Saccharomyces_mikatae_MIT 9 6
Saccharomyces_paradoxus_MIT 9 6
Saccharomyces_cerevisiae_76   (Baker's yeast)   9 6
Saccharomyces_bayanus_MIT 10 7
Kluyveromyces_lactis 8 6
Schizosaccharomyces_cryophilus_OY26_22 12 8
Schizosaccharomyces_octosporus_yFS286_ 11 8
Schizosaccharomyces_japonicus_yFS275_ 12 8
Schizosaccharomyces_pombe   (Fission yeast)   11 7
Catenaria_anguillulae_PL171_v1.0 13 10
Allomyces_macrogynus_ATCC_38327_ 26 23
Spizellomyces_punctatus_DAOM_BR117_ 22 16
Dictyostelium_discoideum 18 15
Dictyostelium_purpureum_ 17 14
Entamoeba_dispar_1.2 10 7
Entamoeba_invadens_1.2 13 8
Entamoeba_histolytica_1 8 5
Selaginella_moellendorffii_ 71 44
Pinus_taeda   (Loblolly pine)   62 32
Picea_abies   (Norway spruce)   59 28
Eucalyptus_grandis_v201   (Rose gum)   156 86
Theobroma_cacao_B97-61/B2_v1   (Cacao)   95 51
Gossypium_raimondii_v221 381 178
Citrus_clementina_v165 195 85
Citrus_sinensis_v154   (Sweet orange)   171 99
Thellungiella_halophila_v173 138 60
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   182 85
Capsella_rubella_v183 119 52
Arabidopsis_lyrata_   (Lyrate rockcress)   108 51
Arabidopsis_thaliana_10   (Thale cress)   142 63
Carica_papaya_   (Papaya)   63 36
Medicago_truncatula_   (Barrel medic)   182 91
Phaseolus_vulgaris_v186   (French bean)   135 64
Glycine_max_v109   (Soybean)   259 124
Cucumis_sativus_v122   (Cucumber)   129 72
Fragaria_vesca_   (Wild strawberry)   75 38
Malus_domestica_v196   (Apple)   192 105
Prunus_persica_v139   (Peach)   103 52
Linum_usitatissimum_v200   (Flax)   153 80
Manihot_esculenta_v147   (Cassava)   153 79
Populus_trichocarpa_v156   (Black cottonwood)   131 63
Vitis_vinifera_   (Wine grape)   88 47
Mimulus_guttatus_v140   (Spotted monkey flower)   128 57
Solanum_lycopersicum_v.2.3   (Tomato)   104 53
Solanum_tuberosum_   (Potato)   168 85
Actinidia_chinensis_Hongyang_ 137 79
Aquilegia_coerulea_v195 182 88
Triticum_urartu_22 63 33
Triticum_aestivum_22   (Bread wheat)   175 99
Aegilops_tauschii_22 61 34
Brachypodium_distachyon_   (Stiff brome)   124 55
Oryza_barthii_22   (African wild rice)   110 62
Oryza_meridionalis_22 118 62
Oryza_glumaepatula_22 139 74
Oryza_glaberrima   (African rice)   90 43
Oryza_punctata_22 147 78
Oryza_nivara_22 131 67
Oryza_brachyantha_22   (Malo sina)   89 44
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   159 80
Oryza_sativa_v193   (Rice)   159 80
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   116 69
Panicum_virgatum_v202   (Switchgrass)   191 103
Setaria_italica_v164   (Foxtail millet)   118 65
Zea_mays_subsp._mays_   (Maize)   247 114
Zea_mays_v181   (Maize)   268 127
Sorghum_bicolor_   (Sorghum)   74 45
Musa_balbisiana   (Balbis banana)   123 68
Musa_acuminata_22   (Wild Malaysian banana)   149 71
Amborella_trichopoda_22 71 36
Physcomitrella_patens 54 31
Coccomyxa_subellipsoidea_sp._C-169_v2 18 15
Asterochloris_sp._Cgr/DA1pho_v1.0 25 18
Chlorella_variabilis_sp._NC64A_ 32 24
Chlorella_vulgaris_ 10 9
Volvox_carteri_f._nagariensis_ 24 18
Volvox_carteri_v199 18 14
Chlamydomonas_reinhardtii_4.0 24 16
Ostreococcus_sp._RCC809_ 15 12
Ostreococcus_lucimarinus_CCE9901_ 20 15
Ostreococcus_tauri_ 16 12
Bathycoccus_prasinos_ 16 14
Micromonas_sp._RCC299_ 23 17
Micromonas_pusilla_CCMP1545_v3.0 19 17
Cyanidioschyzon_merolae_strain_10D_22 9 5
Cyanidioschyzon_merolae 10 6
Porphyridium_purpureum_02_2012 13 10
Thecamonas_trahens_ATCC_50062_ 14 11
Bigelowiella_natans_CCMP2755_22 27 20
Giardia_lamblia_2.3 4 3
Cyanophora_paradoxa_ 27 21
Leishmania_mexicana_2.4 21 20
Leishmania_major_strain_Friedlin_ 25 24
Leishmania_infantum_JPCM5_2.4 24 23
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 22 21
Trypanosoma_vivax_ 18 18
Trypanosoma_cruzi_strain_CL_Brener 20 20
Trypanosoma_congolense_2.4 23 23
Trypanosoma_brucei_gambiense_v4.1 20 20
Trypanosoma_brucei_TREU927_v4.1 20 20
Ectocarpus_siliculosus 21 14
Aureococcus_anophagefferens_ 9 8
Albugo_laibachii_22 31 23
Pythium_iwayamai_DAOM_BR242034_22 28 22
Pythium_arrhenomanes_ATCC_12531_22 33 21
Pythium_ultimum_v1.7-2 33 22
Pythium_aphanidermatum_DAOM_BR444_22 33 20
Pythium_irregulare_DAOM_BR486_22 35 23
Pythium_vexans_DAOM_BR484_22 36 23
Phytophthora_ramorum_1.1   (Sudden oak death agent)   27 18
Phytophthora_sojae_1.1 33 26
Phytophthora_infestans_T30-4_ 36 23
Phytophthora_capsici_ 30 19
Hyaloperonospora_arabidopsidis_22 32 23
Phaeodactylum_tricornutumCCAP_1055/1 18 12
Fragilariopsis_cylindrus 29 21
Thalassiosira_pseudonana_CCMP1335 18 13
Perkinsus_marinus_ATCC_50983_ 163 125
Paramecium_tetraurelia_ 111 67
Tetrahymena_thermophila_SB210_1_ 48 29
Ichthyophthirius_multifiliis_strain_G5_ 24 12
Cryptosporidium_hominis 11 8
Cryptosporidium_muris 16 10
Cryptosporidium_parvum_Iowa_II 13 9
Neospora_caninum 39 24
Toxoplasma_gondii_VEG 39 22
Toxoplasma_gondii_ME49 40 22
Toxoplasma_gondii_GT1 40 22
Babesia_bovis_T2Bo_ 20 20
Theileria_parva__ 10 9
Theileria_annulata 10 9
Plasmodium_falciparum_3D7_ 19 12
Plasmodium_vivax_SaI-1_7.0 16 11
Plasmodium_knowlesi_strain_H_ 17 11
Plasmodium_yoelii_ssp._yoelii_1_ 12 8
Plasmodium_chabaudi_ 17 11
Plasmodium_berghei_ANKA_ 17 11
Symbiodinium_minutum_clade_B1_v1.2 212 144
Naegleria_gruberi_ 12 9
Trichomonas_vaginalis_ 11 10
Guillardia_theta_CCMP2712_v1.0_ 30 22
Emiliania_huxleyi_CCMP1516_ 50 44

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   121 74
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   25 22
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   17 14
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   36 25
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   51 32
Cryptococcus_neoformans_var._grubii_H99_ 15 12
Cryptococcus_neoformans_B-3501A_ 16 12
Cryptococcus_neoformans_JEC21_ 12 11
Paracoccidioides_brasiliensis_Pb01_ 12 9
Paracoccidioides_brasiliensis_Pb03_ 9 8
Coccidioides_posadasii_str._Silveira_ 15 11
Coccidioides_immitis_RMSCC_3703_ 10 8
Coccidioides_immitis_RMSCC_2394_ 13 10
Coccidioides_immitis_H538.4_ 12 9
Ajellomyces_dermatitidis_ER-3_ 13 10
Histoplasma_capsulatum_H143 13 10
Histoplasma_capsulatum_H88 13 10
Histoplasma_capsulatum_G186AR 14 11
Aspergillus_fumigatus_A1163_ 15 11
Candida_albicans_WO-1_ 10 8
Saccharomyces_cerevisiae_UC5 9 6
Saccharomyces_cerevisiae_PW5 9 6
Saccharomyces_cerevisiae_FL100 4 3
Saccharomyces_cerevisiae_CLIB324 5 4
Saccharomyces_cerevisiae_CBS7960 8 5
Saccharomyces_cerevisiae_YJM269 9 6
Saccharomyces_cerevisiae_T7 9 6
Saccharomyces_cerevisiae_FostersB 8 5
Saccharomyces_cerevisiae_FostersO 6 4
Saccharomyces_cerevisiae_VL3 7 4
Saccharomyces_cerevisiae_Vin13 7 5
Saccharomyces_cerevisiae_LalvinQA23 7 4
Saccharomyces_cerevisiae_AWRI796 7 5
Saccharomyces_cerevisiae_Sigma1278b 9 6
Saccharomyces_cerevisiae_W303 9 6
Saccharomyces_cerevisiae_JAY291 9 6
Saccharomyces_cerevisiae_AWRI1631 5 4
Saccharomyces_cerevisiae_YPS163 5 3
Saccharomyces_cerevisiae_M22 3 2
Saccharomyces_cerevisiae_T73 6 4
Saccharomyces_cerevisiae_CLIB215 9 6
Saccharomyces_cerevisiae_Y10 4 3
Saccharomyces_cerevisiae_YJM789_ 9 6
Saccharomyces_cerevisiae_YJM789 9 6
Saccharomyces_cerevisiae_RM11-1a 9 6
Saccharomyces_cerevisiae_RM11-1a_ 9 6
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   9 6
Schizosaccharomyces_pombe_972h-_ 11 7
Batrachochytrium_dendrobatidis_JEL423_ 17 13
Batrachochytrium_dendrobatidis_JAM81_ 15 11
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   86 47
Hordeum_vulgare_22   (Domesticated barley)   195 91
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   85 50
Trypanosoma_brucei_Lister_427_v4.1 18 18
Neospora_caninum_Nc-Liverpool_6.2 39 24
Plasmodium_falciparum_HB3_ 17 11
Plasmodium_falciparum_Dd2_ 14 10

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   60 43
Pan_troglodytes_69_2.1.4   (Chimpanzee)   48 31
Gorilla_gorilla_69_3.1   (Western gorilla)   47 31
Pongo_abelii_69_2   (Sumatran orangutan)   43 29
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   45 31
Macaca_mulatta_69_1   (Rhesus monkey)   39 28
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   48 32
Otolemur_garnettii_69_3   (Small-eared galago)   45 30
Microcebus_murinus_69_1   (Gray mouse lemur)   25 15
Rattus_norvegicus_69_3.4   (Norway rat)   54 34
Mus_musculus_69_38   (House mouse)   48 32
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   29 21
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   42 27
Cavia_porcellus_69_3   (Domestic guinea pig)   46 28
Oryctolagus_cuniculus_69_2   (Rabbit)   40 28
Ochotona_princeps_69   (American pika)   26 16
Tupaia_belangeri_69   (Northern tree shrew)   25 19
Sus_scrofa_69_10.2   (Pig)   45 31
Bos_taurus_69_3.1   (Cattle)   41 26
Vicugna_pacos_69_1   (Alpaca)   22 16
Tursiops_truncatus_69_1   (Bottlenose dolphin)   33 24
Mustela_putorius_furo_69_1.0   (Domestic ferret)   45 29
Ailuropoda_melanoleuca_69_1   (Giant panda)   42 29
Canis_familiaris_69_3.1   (Dog)   44 29
Felis_catus_69   (Domestic cat)   22 19
Equus_caballus_69_2   (Horse)   32 23
Myotis_lucifugus_69_2.0   (Little brown bat)   39 28
Pteropus_vampyrus_69_1   (Large flying fox)   38 24
Sorex_araneus_69_1   (European shrew)   23 16
Erinaceus_europaeus_69   (Western European hedgehog)   24 18
Procavia_capensis_69_1   (Cape rock hyrax)   38 26
Loxodonta_africana_69_3   (African savanna elephant)   38 25
Echinops_telfairi_69   (Small Madagascar hedgehog)   20 15
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   25 16
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   21 15
Macropus_eugenii_69_1.0   (Tammar wallaby)   25 18
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   30 22
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   39 28
Ornithorhynchus_anatinus_69_5   (Platypus)   30 22
Petromyzon_marinus_69_7.0   (Sea lamprey)   13 13
Meleagris_gallopavo_69_2   (Turkey)   23 18
Gallus_gallus_69_2   (Chicken)   28 21
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   29 22
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   30 21
Anolis_carolinensis_69_2.0   (Green anole)   27 20
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   49 29
Latimeria_chalumnae_69_1   (Coelacanth)   40 28
Gadus_morhua_69_1   (Atlantic cod)   41 30
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   44 28
Takifugu_rubripes_69_4   (Torafugu)   44 29
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   43 29
Oryzias_latipes_69_1   (Japanese medaka)   39 29
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   53 34
Oreochromis_niloticus_69_1.0   (Nile tilapia)   47 31
Danio_rerio_69_9   (Zebrafish)   60 41
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   18 14
Ciona_intestinalis_69   (Vase tunicate)   24 15
Drosophila_melanogaster_69_5   (Fruit fly)   19 17
Caenorhabditis_elegans_69_215   (Roundworm)   46 28
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   9 6
Arabidopsis_thaliana_10   (Thale cress)   98 46

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   156 117
Homo_sapiens__(NCBI_version)   (Human)   63 43
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   48 32
Heliconius_numata__(Incomplete) 10 9
Loa_loa_v3.3_(Request)   (Eye worm)   33 23
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   36 26
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   25 19
Moniliophthora_perniciosa_FA553__(Genome_survey) 4 4
Encephalitozoon_intestinalis__(endoparasite) 8 6
Encephalitozoon_cuniculi_(endoparasite) 8 6
Picea_sitchensis__(Incomplete)   (Sitka spruce)   7 3
Lotus_japonicus__(Early_assembly) 83 47
Malus_x_domestica_(Duplicate)   (Apple)   192 105
Ricinus_communis__(Early_assembly)   (Castor bean)   77 36
Nicotiana_benthamiana_0.4.4_(Early_draft) 187 91
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   101 50
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   104 53
Phoenix_dactylifera__(Early_draft)   (Date palm)   40 26
UniProt__viral_sequences_(Viral) 44 44
PDB_chains_(SCOP_1.75)_(PDB) 7 4
Protozoadb_2010_08_(Protozoadb) 558 421
STRING_v9.0.5_(STRING) 3235 2172
TargetDB__(Targets) 139 102
NCBI_2017_08_genome 44217 28363
Protein_Data_Bank_(all_PDB_sequenc) 90 83
Uniprot_2018_03_genome 46149 30350
NCBI_viral_sequences_(Viral) 19 19
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 101 101

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