SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Myosin rod fragments superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Myosin rod fragments domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   243 82
Pan_troglodytes_76_2.1.4   (Chimpanzee)   82 27
Gorilla_gorilla_76_3.1   (Western gorilla)   141 45
Pongo_abelii_76_2   (Sumatran orangutan)   86 27
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   77 26
Papio_anubis_76   (Olive baboon)   84 26
Macaca_mulatta_76_1   (Rhesus monkey)   137 49
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   130 44
Otolemur_garnettii_76_3   (Small-eared galago)   78 22
Microcebus_murinus_76_1   (Gray mouse lemur)   72 19
Rattus_norvegicus_76_5.0   (Norway rat)   84 27
Mus_musculus_76_38   (House mouse)   173 67
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   58 16
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   61 16
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   74 18
Cavia_porcellus_76_3   (Domestic guinea pig)   51 19
Oryctolagus_cuniculus_76_2   (Rabbit)   73 24
Ochotona_princeps_76   (American pika)   52 15
Tupaia_belangeri_76   (Northern tree shrew)   61 17
Sus_scrofa_76_10.2   (Pig)   84 31
Bos_taurus_76_3.1   (Cattle)   81 27
Ovis_aries_76_3.1   (Sheep)   91 30
Vicugna_pacos_76_1   (Alpaca)   39 11
Tursiops_truncatus_76_1   (Bottlenose dolphin)   66 20
Mustela_putorius_furo_76_1.0   (Domestic ferret)   62 26
Ailuropoda_melanoleuca_76_1   (Giant panda)   85 29
Canis_familiaris_76_3.1   (Dog)   94 30
Felis_catus_76_6.2   (Domestic cat)   92 25
Equus_caballus_76_2   (Horse)   143 37
Myotis_lucifugus_76_2.0   (Little brown bat)   72 24
Pteropus_vampyrus_76_1   (Large flying fox)   73 22
Sorex_araneus_76_1   (European shrew)   51 17
Erinaceus_europaeus_76   (Western European hedgehog)   57 18
Procavia_capensis_76_1   (Cape rock hyrax)   65 22
Loxodonta_africana_76_3   (African savanna elephant)   138 40
Echinops_telfairi_76   (Small Madagascar hedgehog)   50 20
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   106 37
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   40 12
Macropus_eugenii_76_1.0   (Tammar wallaby)   59 20
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   77 25
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   49 19
Ornithorhynchus_anatinus_76_5   (Platypus)   75 29
Saccoglossus_kowalevskii_v3.0 200 44
Petromyzon_marinus_76_7.0   (Sea lamprey)   35 15
Meleagris_gallopavo_76_2   (Turkey)   100 29
Gallus_gallus_76_4   (Chicken)   91 27
Anas_platyrhynchos_76_1.0   (Mallard)   63 20
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   83 25
Ficedula_albicollis_76_1.0   (Collared flycatcher)   92 28
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   77 25
Anolis_carolinensis_76_2.0   (Green anole)   73 23
Xenopus_laevis_   (African clawed frog)   123 57
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   123 41
Latimeria_chalumnae_76_1   (Coelacanth)   70 26
Lepisosteus_oculatus_76   (Spotted gar)   129 42
Gadus_morhua_76_1   (Atlantic cod)   128 36
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   185 55
Takifugu_rubripes_76_4   (Torafugu)   272 106
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   144 46
Oryzias_latipes_76_1   (Japanese medaka)   174 61
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   90 29
Poecilia_formosa_76   (Amazon molly)   113 27
Oreochromis_niloticus_76_1.0   (Nile tilapia)   146 50
Astyanax_mexicanus_76   (Mexican tetra)   100 27
Danio_rerio_76_9   (Zebrafish)   282 92
Oikopleura_dioica 70 18
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   178 50
Ciona_intestinalis_76   (Vase tunicate)   32 12
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   17 9
Adineta_vaga 94 29
Octopus_bimaculoides_280 37 24
Crassostrea_gigas_22   (Pacific oyster)   32 18
Lottia_gigantea_   (Owl limpet)   7 7
Helobdella_robusta_ 11 7
Capitella_sp._I_ 8 8
Danaus_plexippus_OGS1.0   (Monarch butterfly)   14 6
Heliconius_melpomene_   (Postman butterfly)   12 5
Bombyx_mori_   (Domestic silkworm)   14 6
Nasonia_vitripennis_   (Jewel wasp)   12 4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   47 17
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   16 7
Linepithema_humile_v1.1   (Argentine ant)   12 5
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   14 7
Solenopsis_invicta_v.2.2.3   (Red fire ant)   15 5
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   18 6
Atta_cephalotes_v1.1 13 9
Camponotus_floridanus_v3.3   (Florida carpenter ant)   14 5
Lucilia_cuprina   (Australian sheep blowfly)   15 5
Drosophila_grimshawi_1.3 14 5
Drosophila_willistoni_1.3 14 4
Drosophila_pseudoobscura_2.13 16 5
Drosophila_persimilis_1.3 11 5
Drosophila_suzukii 12 3
Drosophila_yakuba_1.3 18 8
Drosophila_simulans_1.3 8 4
Drosophila_sechellia_1.3 9 3
Drosophila_melanogaster_76_5   (Fruit fly)   150 34
Drosophila_erecta_1.3 12 3
Drosophila_ananassae_1.3 14 5
Drosophila_virilis_1.2 15 4
Drosophila_mojavensis_1.3 14 4
Megaselia_scalaris_22 7 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   32 9
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   36 18
Anopheles_darlingi_22   (American malaria mosquito)   14 7
Anopheles_gambiae_49_3j   (African malaria mosquito)   22 7
Tribolium_castaneum_3.0   (Red flour beetle)   18 8
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   18 6
Acyrthosiphon_pisum_   (Pea aphid)   25 5
Rhodnius_prolixus_22 14 4
Daphnia_pulex_   (Common water flea)   11 6
Strigamia_maritima_22 19 8
Sarcoptes_scabiei 17 7
Tetranychus_urticae_   (Two-spotted spider mite)   20 8
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8 3
Pristionchus_pacificus_ 39 11
Meloidogyne_incognita_   (Southern root-knot nematode)   26 7
Meloidogyne_hapla_ 4 2
Onchocerca_volvulus_22 32 10
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   42 15
Caenorhabditis_japonica_ 34 9
Caenorhabditis_brenneri_ 55 16
Caenorhabditis_remanei_ 37 12
Caenorhabditis_elegans_76_235   (Roundworm)   61 21
Caenorhabditis_briggsae_2 37 13
Trichinella_spiralis_22 20 7
Hymenolepis_microstoma_ 17 7
Echinococcus_multilocularis_ 15 5
Echinococcus_granulosus_ 17 7
Taenia_solium_   (Pork tapeworm)   13 3
Schistosoma_mansoni_ 46 14
Mnemiopsis_leidyi   (Sea walnut)   25 11
Thelohanellus_kitauei 7 4
Acropora_digitifera_v1.0 17 13
Nematostella_vectensis_1.0   (Starlet sea anemone)   16 9
Hydra_vulgaris 20 10
Amphimedon_queenslandica 27 14
Trichoplax_adhaerens_ 1 1
Proterospongia_sp._ATCC_50818_ 8 6
Monosiga_brevicollis_ 2 2
Sphaeroforma_arctica_JP610_ 9 4
Capsaspora_owczarzaki_ATCC_30864_ 12 5
Conidiobolus_coronatus_NRRL28638_v1.0 2 1
Mortierella_verticillata_NRRL_6337_ 8 4
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 2 2
Ustilago_maydis_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1 1
Rhodotorula_graminis_WP1_v1.0 1 1
Sphaerobolus_stellatus_v1.0 7 6
Piloderma_croceum_F_1598_v1.0 3 3
Coniophora_puteana 3 3
Hydnomerulius_pinastri_v2.0 2 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 3 3
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 2 2
Scleroderma_citrinum_Foug_A_v1.0 3 3
Coprinopsis_cinerea_okayama7_130_v3 6 6
Laccaria_bicolor_S238N-H82_ 2 1
Agaricus_bisporus_var._bisporus_ 3 3
Schizophyllum_commune_ 5 5
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 5 2
Punctularia_strigosozonata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 2 2
Fomitiporia_mediterranea_v1.0 5 3
Tulasnella_calospora_AL13/4D_v1.0 4 3
Fomitopsis_pinicolav1.0 3 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3 3
Phanerochaete_chrysosporium_RP-78_2.1 3 3
Dichomitus_squalens 2 2
Trametes_versicolor_v1.0 1 1
Tremella_mesenterica_   (Witches' butter)   1 1
Daldinia_eschscholzii_EC12_v1.0 2 2
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Magnaporthe_poae_ATCC_64411_22 6 6
Magnaporthe_grisea_70-15_ 3 2
Podospora_anserina_ 4 2
Sporotrichum_thermophile_ATCC_42464_ 4 2
Thielavia_terrestris_NRRL_8126_ 4 4
Chaetomium_globosum_CBS_148.51_ 7 3
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 5 2
Verticillium_albo-atrum_VaMs.102_ 2 1
Verticillium_dahliae_VdLs.17_ 2 1
Acremonium_alcalophilumv_1.0 4 2
Glomerella_graminicola_22 3 2
Fusarium_graminearum_ 3 2
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 2 2
Trichoderma_virens_Gv29-8_ 2 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 2 2
Botrytis_cinerea_B05.10_ 3 3
Sclerotinia_sclerotiorum_ 2 2
Blumeria_graminis_22 1 1
Leptosphaeria_maculans_22 2 2
Setosphaeria_turcica_v1.0 2 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 2 2
Zasmidium_cellare_ATCC_36951_v1.0 3 3
Septoria_musiva_v1.0 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 3 2
Coccidioides_posadasii_RMSCC_3488_ 5 4
Coccidioides_immitis_RS_ 5 3
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3 2
Microsporum_canis_CBS_113480_ 3 3
Trichophyton_equinum_CBS_127.97_ 3 3
Trichophyton_verrucosum_HKI_0517_ 3 2
Arthroderma_benhamiae_CBS_112371_ 2 2
Trichophyton_tonsurans_CBS_112818_ 3 3
Trichophyton_rubrum_CBS_118892_ 2 2
Uncinocarpus_reesii_1704_ 4 3
Aspergillus_zonatus_v1.0 2 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 4 3
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 3 3
Aspergillus_fumigatus_Af293 5 4
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 2 2
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 2 2
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 5 4
Aspergillus_terreus_NIH2624_ 5 4
Aspergillus_tubingensis_v1.0 2 2
Aspergillus_wentii_v1.0 4 4
Aspergillus_oryzae_RIB40_ 5 3
Aspergillus_niger_22 6 5
Aspergillus_flavus_NRRL3357_ 5 3
Aspergillus_clavatus_NRRL_1_ 3 3
Penicillium_marneffei_ATCC_18224_ 4 2
Tuber_melanosporum_Mel28_22 3 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3 3
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 3
Candida_dubliniensis_CD36_ 1 1
Candida_albicans_SC5314 3 3
Candida_guilliermondii_ATCC_6260_ 4 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 1 1
Candida_lusitaniae_ATCC_42720_ 2 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Candida_glabrata_CBS138 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Saccharomyces_mikatae_MIT 1 1
Saccharomyces_bayanus_MIT 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_octosporus_yFS286_ 2 1
Catenaria_anguillulae_PL171_v1.0 12 6
Allomyces_macrogynus_ATCC_38327_ 8 8
Spizellomyces_punctatus_DAOM_BR117_ 12 4
Dictyostelium_discoideum 14 3
Dictyostelium_purpureum_ 11 1
Entamoeba_dispar_1.2 9 5
Entamoeba_invadens_1.2 28 25
Entamoeba_histolytica_1 5 3
Selaginella_moellendorffii_ 5 5
Pinus_taeda   (Loblolly pine)   2 2
Picea_abies   (Norway spruce)   5 5
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 17 17
Citrus_clementina_v165 2 2
Citrus_sinensis_v154   (Sweet orange)   3 3
Thellungiella_halophila_v173 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   6 6
Capsella_rubella_v183 4 4
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   6 6
Medicago_truncatula_   (Barrel medic)   7 7
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   1 1
Cucumis_sativus_v122   (Cucumber)   4 4
Fragaria_vesca_   (Wild strawberry)   5 5
Malus_domestica_v196   (Apple)   8 8
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   2 2
Manihot_esculenta_v147   (Cassava)   2 2
Populus_trichocarpa_v156   (Black cottonwood)   3 3
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Solanum_tuberosum_   (Potato)   3 3
Actinidia_chinensis_Hongyang_ 5 5
Aquilegia_coerulea_v195 2 2
Triticum_urartu_22 3 3
Triticum_aestivum_22   (Bread wheat)   10 10
Aegilops_tauschii_22 1 1
Brachypodium_distachyon_   (Stiff brome)   2 2
Oryza_barthii_22   (African wild rice)   2 2
Oryza_meridionalis_22 5 5
Oryza_glumaepatula_22 8 8
Oryza_glaberrima   (African rice)   12 12
Oryza_punctata_22 4 4
Oryza_nivara_22 4 4
Oryza_brachyantha_22   (Malo sina)   7 7
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   35 35
Oryza_sativa_v193   (Rice)   32 32
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3 3
Panicum_virgatum_v202   (Switchgrass)   6 6
Setaria_italica_v164   (Foxtail millet)   4 4
Zea_mays_subsp._mays_   (Maize)   5 5
Zea_mays_v181   (Maize)   6 6
Sorghum_bicolor_   (Sorghum)   5 4
Musa_balbisiana   (Balbis banana)   5 4
Musa_acuminata_22   (Wild Malaysian banana)   7 5
Amborella_trichopoda_22 5 5
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 2 2
Chlorella_vulgaris_ 2 2
Volvox_carteri_f._nagariensis_ 7 7
Volvox_carteri_v199 7 7
Chlamydomonas_reinhardtii_4.0 7 7
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_tauri_ 1 1
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Cyanidioschyzon_merolae_strain_10D_22 2 2
Cyanidioschyzon_merolae 2 2
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 5 3
Bigelowiella_natans_CCMP2755_22 1 1
Giardia_lamblia_2.3 3 3
Cyanophora_paradoxa_ 3 3
Leishmania_mexicana_2.4 15 3
Leishmania_major_strain_Friedlin_ 8 3
Leishmania_infantum_JPCM5_2.4 8 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 20 6
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 5 4
Trypanosoma_brucei_gambiense_v4.1 2 2
Trypanosoma_brucei_TREU927_v4.1 4 3
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 2 2
Pythium_arrhenomanes_ATCC_12531_22 2 2
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 2 2
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 3 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5 5
Phytophthora_sojae_1.1 3 3
Phytophthora_infestans_T30-4_ 1 1
Phytophthora_capsici_ 1 1
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 3 3
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 3 3
Paramecium_tetraurelia_ 11 10
Tetrahymena_thermophila_SB210_1_ 5 5
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 2 1
Theileria_annulata 3 3
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 6 6
Naegleria_gruberi_ 2 2
Trichomonas_vaginalis_ 28 23
Guillardia_theta_CCMP2712_v1.0_ 8 8
Emiliania_huxleyi_CCMP1516_ 1 1
Leptolyngbya_sp._PCC_7376 1 1
Acaryochloris_marina_MBIC11017 1 1
Thermosynechococcus_sp._NK55 1 1
Thermosynechococcus_elongatus_BP-1 1 1
Synechococcus_sp._PCC_7502 1 1
Microcoleus_sp._PCC_7113 1 1
Trichodesmium_erythraeum_IMS101 1 1
Gloeocapsa_sp._PCC_7428 1 1
Microcystis_aeruginosa_NIES-843 1 1
Mycoplasma_mycoides_subsp._capri_LC_str._95010 4 4
Eggerthella_lenta_DSM_2243 1 1
Coriobacterium_glomerans_PW2 1 1
Acidothermus_cellulolyticus_11B 1 1
Saccharomonospora_viridis_DSM_43017 1 1
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Thermomicrobium_roseum_DSM_5159 1 1
Chloroflexus_aggregans_DSM_9485 1 1
Marinithermus_hydrothermalis_DSM_14884 2 2
Thermus_sp._CCB_US3_UF1 2 2
Thermus_scotoductus_SA-01 2 2
Symbiobacterium_thermophilum_IAM_14863 1 1
Clostridium_cellulolyticum_H10 1 1
Sulfobacillus_acidophilus_DSM_10332 1 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 1 1
Acetobacterium_woodii_DSM_1030 1 1
Eubacterium_eligens_ATCC_27750 1 1
Filifactor_alocis_ATCC_35896 1 1
Roseburia_hominis_A2-183 1 1
Roseburia_intestinalis 1 1
Syntrophothermus_lipocalidus_DSM_12680 2 2
Clostridium_sp._BNL1100 1 1
Coprothermobacter_proteolyticus_DSM_5265 1 1
Thermoanaerobacter_tengcongensis_MB4 1 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1 1
Thermoanaerobacter_sp._X514 1 1
Thermoanaerobacter_italicus_Ab9 1 1
Thermoanaerobacter_wiegelii_Rt8.B1 2 2
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1 1
Acetohalobium_arabaticum_DSM_5501 2 2
Carnobacterium_sp._17-4 1 1
Enterococcus_hirae_ATCC_9790 2 2
Enterococcus_faecium_Aus0004 1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 1 1
Lactobacillus_crispatus_ST1 1 1
Lactobacillus_johnsonii_FI9785 1 1
Lactobacillus_amylovorus_GRL1118 1 1
Lactobacillus_brevis_ATCC_367 1 1
Lactobacillus_acidophilus_30SC 1 1
Pediococcus_pentosaceus_ATCC_25745 1 1
Streptococcus_uberis_0140J 1 1
Streptococcus_agalactiae_A909 2 2
Oceanobacillus_iheyensis_HTE831 3 3
Geobacillus_thermoleovorans_CCB_US3_UF5 1 1
Bacillus_pseudofirmus_OF4 1 1
Bacillus_cellulosilyticus_DSM_2522 1 1
Staphylococcus_lugdunensis_HKU09-01 1 1
Staphylococcus_epidermidis_RP62A 1 1
Candidatus_Cloacamonas_acidaminovorans 1 1
Chlorobium_chlorochromatii_CaD3 1 1
Chlorobaculum_parvum_NCIB_8327 1 1
Chlorobium_tepidum_TLS 2 2
Flexibacter_litoralis_DSM_6794 1 1
Owenweeksia_hongkongensis_DSM_17368 1 1
Zobellia_galactanivorans 1 1
Waddlia_chondrophila_WSU_86-1044 1 1
Chlamydia_psittaci_01DC11 1 1
Pirellula_staleyi_DSM_6068 1 1
Thermanaerovibrio_acidaminovorans_DSM_6589 1 1
Petrotoga_mobilis_SJ95 1 1
Fervidobacterium_pennivorans_DSM_9078 1 1
Fervidobacterium_nodosum_Rt17-B1 1 1
Thermotoga_lettingae_TMO 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Granulicella_mallensis_MP5ACTX8 1 1
Terriglobus_saanensis_SP1PR4 2 2
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 2 2
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1 1
Candidatus_Saccharimonas_aalborgensis 1 1
Acidithiobacillus_ferrivorans_SS3 1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1 1
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Arcobacter_sp._L 1 1
Helicobacter_bizzozeronii_CIII-1 1 1
Desulfomonile_tiedjei_DSM_6799 2 2
Desulfohalobium_retbaense_DSM_5692 1 1
Desulfovibrio_alaskensis_G20 1 1
Haliangium_ochraceum_DSM_14365 1 1
Anaeromyxobacter_sp._Fw109-5 1 1
Dechlorosoma_suillum_PS 1 1
Ralstonia_pickettii_12D 1 1
Burkholderia_glumae_BGR1 1 1
Herminiimonas_arsenicoxydans 1 1
Janthinobacterium_sp._Marseille 1 1
Herbaspirillum_seropedicae_SmR1 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Ketogulonicigenium_vulgare_Y25 1 1
Rhodospirillum_photometricum_DSM_122 1 1
Azospirillum_lipoferum_4B 1 1
Azospirillum_brasilense_Sp245 1 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Xanthobacter_autotrophicus_Py2 1 1
Azorhizobium_caulinodans_ORS_571 1 1
Methylobacterium_sp._4-46 3 3
Methylobacterium_nodulans_ORS_2060 1 1
Parvibaculum_lavamentivorans_DS-1 1 1
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 1 1
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Brucella_abortus_S19 1 1
Bradyrhizobium_japonicum_USDA_110 1 1
Oceanimonas_sp._GK1 1 1
Shewanella_loihica_PV-4 1 1
Pseudoalteromonas_sp._SM9913 1 1
Kangiella_koreensis_DSM_16069 1 1
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Allochromatium_vinosum_DSM_180 2 2
Nitrosococcus_oceani_ATCC_19707 1 1
Legionella_pneumophila_str._Corby 1 1
Escherichia_blattae_DSM_4481 1 1
Cronobacter_turicensis_z3032 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Enterobacter_sp._R4-368 1 1
Pseudomonas_sp._VLB120 1 1
Nanoarchaeum_equitans_Kin4-M 1 1
Acidilobus_saccharovorans_345-15 1 1
Pyrolobus_fumarii_1A 3 3
Desulfurococcus_mucosus_DSM_2162 1 1
Thermofilum_sp._1910b 1 1
Thermofilum_pendens_Hrk_5 2 2
Pyrobaculum_calidifontis_JCM_11548 3 2
Pyrobaculum_oguniense_TE7 2 2
Pyrobaculum_aerophilum_str._IM2 1 1
Thermoproteus_uzoniensis_768-20 1 1
Methanocella_conradii_HZ254 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanoculleus_bourgensis_MS2 1 1
Archaeoglobus_fulgidus_DSM_4304 1 1
Pyrococcus_abyssi_GE5 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halopiger_xanaduensis_SH-6 1 1
Natrinema_sp._J7-2 1 1
Halogeometricum_borinquense_DSM_11551 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Natronomonas_pharaonis_DSM_2160 1 1
Haloarcula_hispanica_ATCC_33960 1 1
Halalkalicoccus_jeotgali_B3 2 2
Halobacterium_salinarum_R1 1 1
Methanocaldococcus_sp._FS406-22 1 1
Methanocaldococcus_vulcanius_M7 1 1
Methanothermobacter_marburgensis_str._Marburg 1 1
Methanosphaera_stadtmanae_DSM_3091 1 1
Methanobrevibacter_sp._AbM4 1 1
Methanobrevibacter_ruminantium_M1 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   149 51
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   126 29
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   83 18
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   64 20
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   37 11
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 2 2
Cryptococcus_neoformans_JEC21_ 2 2
Paracoccidioides_brasiliensis_Pb01_ 5 3
Paracoccidioides_brasiliensis_Pb03_ 3 2
Coccidioides_posadasii_str._Silveira_ 6 4
Coccidioides_immitis_RMSCC_3703_ 3 3
Coccidioides_immitis_RMSCC_2394_ 5 3
Coccidioides_immitis_H538.4_ 4 4
Ajellomyces_dermatitidis_ER-3_ 3 2
Histoplasma_capsulatum_H143 3 2
Histoplasma_capsulatum_H88 3 2
Histoplasma_capsulatum_G186AR 3 2
Aspergillus_fumigatus_A1163_ 5 4
Candida_albicans_WO-1_ 2 2
Batrachochytrium_dendrobatidis_JEL423_ 9 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1
Hordeum_vulgare_22   (Domesticated barley)   10 10
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5 5
Trypanosoma_brucei_Lister_427_v4.1 4 3
Neospora_caninum_Nc-Liverpool_6.2 1 1
Plasmodium_falciparum_HB3_ 1 1
Dactylococcopsis_salina_PCC_8305 1 1
Oscillatoria_nigro-viridis_PCC_7112 5 4
Oscillatoria_acuminata_PCC_6304 1 1
Cyanothece_sp._PCC_7822 2 1
Cyanothece_sp._PCC_7424 1 1
Cyanobacterium_aponinum_PCC_10605 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1 1
Stanieria_cyanosphaera_PCC_7437 1 1
Candidatus_Phytoplasma_australiense_Strawberry_lethal_yellows_phytoplasma_(CPA)_str._NZSb11 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1 1
Corynebacterium_diphtheriae_HC02 1 1
Thermus_oshimai_JL-2 1 1
Thermus_thermophilus_JL-18 1 1
Sulfobacillus_acidophilus_TPY 1 1
Roseburia_intestinalis_XB6B4 2 2
Clostridium_perfringens_str._13 1 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1 1
Thermacetogenium_phaeum_DSM_12270 1 1
Thermoanaerobacter_sp._X513 1 1
Enterococcus_faecium_Aus0085 1 1
Enterococcus_faecium_NRRL_B-2354 1 1
Enterococcus_faecium_DO 2 2
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 1 1
Lactobacillus_johnsonii_N6.2 1 1
Lactobacillus_johnsonii_NCC_533 1 1
Lactobacillus_amylovorus_GRL_1112 1 1
Lactobacillus_brevis_KB290 1 1
Lactobacillus_acidophilus_La-14 1 1
Lactobacillus_acidophilus_NCFM 1 1
Pediococcus_pentosaceus_SL4 1 1
Lactococcus_lactis_subsp._lactis_KF147 1 1
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 2 2
Streptococcus_equi_subsp._zooepidemicus 1 1
Streptococcus_pyogenes_Alab49 1 1
Streptococcus_agalactiae_GD201008-001 1 1
Bacillus_coagulans_36D1 1 1
Staphylococcus_lugdunensis_N920143 1 1
Staphylococcus_epidermidis_ATCC_12228 1 1
Chlorobium_phaeobacteroides_BS1 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Chlamydia_psittaci_WC 1 1
Chlamydia_psittaci_MN 1 1
Chlamydia_psittaci_84/55 1 1
Chlamydia_psittaci_08DC60 1 1
Chlamydia_psittaci_02DC15 1 1
Chlamydia_psittaci_C19/98 1 1
Chlamydia_psittaci_NJ1 1 1
Chlamydia_psittaci_CP3 1 1
Chlamydophila_psittaci_RD1 1 1
Chlamydophila_psittaci_6BC 1 1
Chlamydophila_psittaci_6BC 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Helicobacter_pylori_BM012S 1 1
Helicobacter_pylori_UM037 1 1
Helicobacter_pylori_PeCan18 1 1
Helicobacter_pylori_Puno135 2 2
Helicobacter_pylori_ELS37 1 1
Helicobacter_pylori_Sat464 1 1
Helicobacter_pylori_SJM180 1 1
Helicobacter_pylori_83 1 1
Helicobacter_pylori_Shi470 1 1
Helicobacter_pylori_F32 1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1 1
Sorangium_cellulosum_So0157-2 1 1
Ralstonia_pickettii_12J 1 1
Burkholderia_thailandensis_MSMB121 1 1
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 1 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Candidatus_Pelagibacter_ubique_HTCC1062 1 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 1 1
Brucella_ceti_TE10759-12 1 1
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_NI 1 1
Brucella_melitensis_M5-90 1 1
Brucella_melitensis_M28 1 1
Brucella_abortus_A13334 1 1
Brucella_melitensis_biovar_Abortus_2308 1 1
Brucella_abortus_bv._1_str._9-941 1 1
Sinorhizobium_meliloti_GR4 1 1
Mannheimia_succiniciproducens_MBEL55E 1 1
Pasteurella_multocida_36950 1 1
Stenotrophomonas_maltophilia_JV3 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Coxiella_burnetii_RSA_331 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1
Raoultella_ornithinolytica_B6 1 1
Salmonella_bongori_N268-08 1 1
Enterobacter_aerogenes_EA1509E 1 1
Pseudomonas_putida_HB3267 1 1
Sulfolobus_islandicus_REY15A 1 1
Methanolobus_psychrophilus_R15 1 1
Thermococcus_litoralis_DSM_5473 1 1
Halovivax_ruber_XH-70 1 1
Natrinema_pellirubrum_DSM_15624 2 1
Natronococcus_occultus_SP4 1 1
Natronomonas_moolapensis_8.8.11 1 1
Haloarcula_hispanica_N601 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   90 27
Pan_troglodytes_69_2.1.4   (Chimpanzee)   76 25
Gorilla_gorilla_69_3.1   (Western gorilla)   65 22
Pongo_abelii_69_2   (Sumatran orangutan)   72 23
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   65 22
Macaca_mulatta_69_1   (Rhesus monkey)   85 28
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   68 21
Otolemur_garnettii_69_3   (Small-eared galago)   72 21
Microcebus_murinus_69_1   (Gray mouse lemur)   72 19
Rattus_norvegicus_69_3.4   (Norway rat)   73 24
Mus_musculus_69_38   (House mouse)   84 27
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   58 16
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   61 16
Cavia_porcellus_69_3   (Domestic guinea pig)   49 18
Oryctolagus_cuniculus_69_2   (Rabbit)   68 21
Ochotona_princeps_69   (American pika)   52 15
Tupaia_belangeri_69   (Northern tree shrew)   61 17
Sus_scrofa_69_10.2   (Pig)   82 29
Bos_taurus_69_3.1   (Cattle)   80 26
Vicugna_pacos_69_1   (Alpaca)   39 11
Tursiops_truncatus_69_1   (Bottlenose dolphin)   66 20
Mustela_putorius_furo_69_1.0   (Domestic ferret)   62 26
Ailuropoda_melanoleuca_69_1   (Giant panda)   77 24
Canis_familiaris_69_3.1   (Dog)   72 20
Felis_catus_69   (Domestic cat)   64 18
Equus_caballus_69_2   (Horse)   72 21
Myotis_lucifugus_69_2.0   (Little brown bat)   72 24
Pteropus_vampyrus_69_1   (Large flying fox)   73 22
Sorex_araneus_69_1   (European shrew)   51 17
Erinaceus_europaeus_69   (Western European hedgehog)   57 18
Procavia_capensis_69_1   (Cape rock hyrax)   65 22
Loxodonta_africana_69_3   (African savanna elephant)   80 22
Echinops_telfairi_69   (Small Madagascar hedgehog)   50 20
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   48 14
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   40 12
Macropus_eugenii_69_1.0   (Tammar wallaby)   59 20
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   71 23
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   49 19
Ornithorhynchus_anatinus_69_5   (Platypus)   67 27
Petromyzon_marinus_69_7.0   (Sea lamprey)   35 15
Meleagris_gallopavo_69_2   (Turkey)   58 19
Gallus_gallus_69_2   (Chicken)   84 24
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   83 25
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   58 20
Anolis_carolinensis_69_2.0   (Green anole)   66 20
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   96 30
Latimeria_chalumnae_69_1   (Coelacanth)   64 21
Gadus_morhua_69_1   (Atlantic cod)   103 31
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   112 35
Takifugu_rubripes_69_4   (Torafugu)   85 33
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   117 35
Oryzias_latipes_69_1   (Japanese medaka)   129 47
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   90 29
Oreochromis_niloticus_69_1.0   (Nile tilapia)   107 34
Danio_rerio_69_9   (Zebrafish)   178 53
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   36 11
Ciona_intestinalis_69   (Vase tunicate)   32 12
Drosophila_melanogaster_69_5   (Fruit fly)   72 15
Caenorhabditis_elegans_69_215   (Roundworm)   35 9
Arabidopsis_thaliana_10   (Thale cress)   2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   204 75
Homo_sapiens__(NCBI_version)   (Human)   125 39
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   81 26
Heliconius_numata__(Incomplete) 6 6
Loa_loa_v3.3_(Request)   (Eye worm)   38 16
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   33 17
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   28 8
Moniliophthora_perniciosa_FA553__(Genome_survey) 5 5
Lotus_japonicus__(Early_assembly) 2 2
Malus_x_domestica_(Duplicate)   (Apple)   8 8
Nicotiana_benthamiana_0.4.4_(Early_draft) 6 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Phoenix_dactylifera__(Early_draft)   (Date palm)   3 3
NCBI_plasmid_sequences_(Plasmids) 15 15
TargetDB__(Targets) 27 15
PDB_chains_(SCOP_1.75)_(PDB) 6 4
NCBI_viral_sequences_(Viral) 35 35
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 37 37
STRING_v9.0.5_(STRING) 2966 1178
Protein_Data_Bank_(all_PDB_sequenc) 89 41
Uniprot_2018_03_genome 34780 15049
NCBI_2017_08_genome 61601 25319
UniProt__viral_sequences_(Viral) 33 33
Protozoadb_2010_08_(Protozoadb) 153 108

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]