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Domain combination pairs in Methanoregula boonei 6A8

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

441 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4332
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 4239
CheY-like PYP-like sensor domain (PAS domain) 3124
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2218
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 137
CheY-like GAF domain-like 118
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 108
PYP-like sensor domain (PAS domain) GAF domain-like 97
PKD domain PKD domain 87
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 81
Calcium ATPase, transmembrane domain M HAD-like 76
Calcium ATPase, transduction domain A HAD-like 76
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 76
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 62
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 65
PurM N-terminal domain-like PurM C-terminal domain-like 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 52
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 51
GroEL equatorial domain-like GroEL-intermediate domain like 51
GroEL equatorial domain-like GroEL apical domain-like 51
GroEL-intermediate domain like GroEL apical domain-like 51
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 43
CBS-domain pair CBS-domain pair 42
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 42
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 42
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 41
P-loop containing nucleoside triphosphate hydrolases Translation proteins 43
CheY-like TPR-like 42
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 43
PYP-like sensor domain (PAS domain) TPR-like 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
TATA-box binding protein-like TATA-box binding protein-like 31
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 33
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
Calcium ATPase, transmembrane domain M Metal cation-transporting ATPase, ATP-binding domain N 33
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 33
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 32
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 33
TPR-like TPR-like 33
Actin-like ATPase domain Actin-like ATPase domain 33
ACT-like ACT-like 32
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
CheY-like Homodimeric domain of signal transducing histidine kinase 32
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 33
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
Rubredoxin-like Rubredoxin-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 21
Pectin lyase-like Protein kinase-like (PK-like) 21
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Ribonuclease H-like DNA/RNA polymerases 22
MFS general substrate transporter MFS general substrate transporter 22
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 22
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Glutathione synthetase ATP-binding domain-like NAD(P)-binding Rossmann-fold domains 21
Periplasmic binding protein-like II GlnB-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Nitrite/Sulfite reductase N-terminal domain-like 4Fe-4S ferredoxins 21
MoeA N-terminal region -like MoeA C-terminal domain-like 22
4Fe-4S ferredoxins Nitrite and sulphite reductase 4Fe-4S domain-like 21
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
PreATP-grasp domain Rudiment single hybrid motif 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 21
ADC-like P-loop containing nucleoside triphosphate hydrolases 21
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 21
Translational machinery components L30e-like 22
Ferritin-like Rubredoxin-like 21
HAMP domain-like PP2C-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Glutamine synthetase/guanido kinase GatB/YqeY motif 22
ADC-like Cdc48 domain 2-like 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
PLP-binding barrel Alanine racemase C-terminal domain-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Thiolase-like Thiolase-like 21
4Fe-4S ferredoxins FMN-dependent nitroreductase-like 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 21
Metallo-hydrolase/oxidoreductase Flavoproteins 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 21
P-loop containing nucleoside triphosphate hydrolases TGS-like 21
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 21
"Winged helix" DNA-binding domain SMAD/FHA domain 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 21
NAD(P)-linked oxidoreductase alpha-helical ferredoxin 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 22
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 22
CheY-like "Winged helix" DNA-binding domain 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Methyl-coenzyme M reductase subunits Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 21
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 21
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
tRNA-guanine transglycosylase Pre-PUA domain 11
PRTase-like PRTase-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 11
tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease catalytic domain-like 11
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase S13-like H2TH domain 11
lambda repressor-like DNA-binding domains CBS-domain pair 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Ribosomal protein S5 domain 2-like Ribulose-phoshate binding barrel 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
Carboxypeptidase regulatory domain-like Starch-binding domain-like 11
Glutamine synthetase/guanido kinase GAD domain-like 11
MgtE N-terminal domain-like CBS-domain pair 11
Voltage-gated potassium channels Magnesium transport protein CorA, transmembrane region 11
"Winged helix" DNA-binding domain Sec63 N-terminal domain-like 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
NAD(P)-binding Rossmann-fold domains DHH phosphoesterases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Creatinase/aminopeptidase "Winged helix" DNA-binding domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Rubredoxin-like Superoxide reductase-like 11
PreATP-grasp domain PreATP-grasp domain 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
Ribulose-phoshate binding barrel RraA-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
PAP/OAS1 substrate-binding domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like PLP-dependent transferases 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase PP2C-like 11
PIN domain-like Prokaryotic type KH domain (KH-domain type II) 11
Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) 11
Nucleic acid-binding proteins DHH phosphoesterases 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
DsrEFH-like DsrEFH-like 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
DNA methylase specificity domain DNA methylase specificity domain 11
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 11
"Winged helix" DNA-binding domain Protein kinase-like (PK-like) 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Putative DNA-binding domain Putative DNA-binding domain 11
4Fe-4S ferredoxins FMN-linked oxidoreductases 11
Clc chloride channel CBS-domain pair 11
"Winged helix" DNA-binding domain PYP-like sensor domain (PAS domain) 11
Thioredoxin-like Six-hairpin glycosidases 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
CheY-binding domain of CheA CheW-like 11
MetI-like MetI-like 11
Sensory domain-like PP2C-like 11
TATA-box binding protein-like DNA-glycosylase 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Aldolase post-HMGL domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Nucleic acid-binding proteins RuvA domain 2-like 11
Sensory domain-like HAMP domain-like 11
eIF2alpha middle domain-like eIF-2-alpha, C-terminal domain 11
Calcium-dependent phosphotriesterase E set domains 11
Tropomyosin CheY-like 11
P-loop containing nucleoside triphosphate hydrolases Aminoacid dehydrogenase-like, N-terminal domain 11
PHP14-like Phospholipase D/nuclease 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Translation proteins ThrRS/AlaRS common domain 11
tRNA-guanine transglycosylase PUA domain-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
Carboxypeptidase regulatory domain-like Carboxypeptidase regulatory domain-like 11
P-loop containing nucleoside triphosphate hydrolases Sec63 N-terminal domain-like 11
Nicotinic receptor ligand binding domain-like Neurotransmitter-gated ion-channel transmembrane pore 11
Flavoproteins Flavoproteins 11
CBS-domain pair DHH phosphoesterases 11
tRNA-binding arm Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 L30e-like 11
S-adenosyl-L-methionine-dependent methyltransferases Tropomyosin 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
S13-like H2TH domain Ribosomal protein S5 domain 2-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
NHL repeat PKD domain 11
P-loop containing nucleoside triphosphate hydrolases NAD(P)-binding Rossmann-fold domains 11
Ribosomal protein L25-like Ribosomal protein L25-like 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Nucleotidyltransferase PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Prismane protein-like alpha-helical ferredoxin 11
Putative DNA-binding domain PheT/TilS domain 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Nucleic acid-binding proteins 11
HprK N-terminal domain-like DHH phosphoesterases 11
ACT-like CheY-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Rad51 N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
lambda repressor-like DNA-binding domains PrpR receptor domain-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
P-loop containing nucleoside triphosphate hydrolases Rad50 coiled-coil Zn hook 11
Ribosomal protein L6 Ribosomal protein L6 11
Radical SAM enzymes Acyl-CoA N-acyltransferases (Nat) 11
HMA, heavy metal-associated domain HAD-like 11
3-carboxy-cis,cis-mucoante lactonizing enzyme Calcium-dependent phosphotriesterase 11
3-carboxy-cis,cis-mucoante lactonizing enzyme E set domains 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
Ligand-binding domain in the NO signalling and Golgi transport Ligand-binding domain in the NO signalling and Golgi transport 11
Methylesterase CheB, C-terminal domain Tropomyosin 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Nqo5-like HydB/Nqo4-like 11
PUA domain-like Adenine nucleotide alpha hydrolases-like 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Radical SAM enzymes RuvA domain 2-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Acyl-CoA N-acyltransferases (Nat) Isochorismatase-like hydrolases 11
tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like 11
Ribbon-helix-helix ACT-like 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Pre-PUA domain PUA domain-like 11
Starch-binding domain-like Starch-binding domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
CBS-domain pair ParB/Sulfiredoxin 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Peptide methionine sulfoxide reductase Thioredoxin-like 11
Radical SAM enzymes "Helical backbone" metal receptor 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Fucose-specific lectin Fucose-specific lectin 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Tropomyosin 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
YrdC/RibB Actin-like ATPase domain 11
tRNA-guanine transglycosylase Uracil-DNA glycosylase-like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
alpha-helical ferredoxin FAD/NAD(P)-binding domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Zinc-binding domain of translation initiation factor 2 beta 11
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 11
Tropomyosin PYP-like sensor domain (PAS domain) 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Aldolase Single hybrid motif 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Trimeric LpxA-like enzymes Fe-S cluster assembly (FSCA) domain-like 11
Hypothetical protein AF0491, middle domain EF-G C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases RuvA domain 2-like 11
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 11
Flavoproteins 4Fe-4S ferredoxins 11
Voltage-gated potassium channels CorA soluble domain-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Periplasmic binding protein-like II ACT-like 11
Dom34/Pelota N-terminal domain-like L30e-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Zinc-binding domain of translation initiation factor 2 beta Nucleic acid-binding proteins 11
AN1-like Zinc finger PR-1-like 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Pseudouridine synthase PUA domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Serine metabolism enzymes domain ACT-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
AF1782-like AF1782-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
GAD domain-like GatB/YqeY motif 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Translational machinery components 11
Class II aaRS and biotin synthetases Translation proteins 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Restriction endonuclease-like RuvA domain 2-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
YjeF N-terminal domain-like Ribokinase-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
PYP-like sensor domain (PAS domain) YojJ-like 11
Initiation factor IF2/eIF5b, domain 3 Translation proteins 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Prokaryotic type KH domain (KH-domain type II) Metallo-hydrolase/oxidoreductase 11
Uracil-DNA glycosylase-like PUA domain-like 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Dom34/Pelota N-terminal domain-like Translational machinery components 11
"Winged helix" DNA-binding domain Ligand-binding domain in the NO signalling and Golgi transport 11
tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like 11
CheY-like CheY-like 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
Protein kinase-like (PK-like) TPR-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
PKD domain Starch-binding domain-like 11
EF-G C-terminal domain-like EF-G C-terminal domain-like 11
CheY-like YojJ-like 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 11
FYSH domain EF-G C-terminal domain-like 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
"Winged helix" DNA-binding domain CBS-domain pair 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
FYSH domain Hypothetical protein AF0491, middle domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Carbamate kinase-like ACT-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Ferredoxin thioredoxin reductase (FTR), catalytic beta chain Rubredoxin-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
PPK N-terminal domain-like PHP14-like 11
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
"Winged helix" DNA-binding domain Riboflavin kinase-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
PKD domain E set domains 11
Cyclin-like Cyclin-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Zinc beta-ribbon Cyclin-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Nucleic acid-binding proteins eIF-2-alpha, C-terminal domain 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
alpha/beta-Hydrolases CBS-domain pair 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
E set domains E set domains 11
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
N-terminal, heterodimerisation domain of RBP7 (RpoE) Nucleic acid-binding proteins 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
post-HMGL domain-like Single hybrid motif 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Translation proteins EF-G C-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain Rubredoxin-like 11
DNA clamp DNA clamp 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleic acid-binding proteins eIF2alpha middle domain-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Invasin/intimin cell-adhesion fragments vWA-like 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
HprK N-terminal domain-like CBS-domain pair 11
Carbon-nitrogen hydrolase Pentein 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Actin-like ATPase domain Protein kinase-like (PK-like) 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11

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