SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Domain combination pairs in Bifidobacterium adolescentis ATCC 15703

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

400 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2413
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 181
CheY-like C-terminal effector domain of the bipartite response regulators 102
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 94
Actin-like ATPase domain Actin-like ATPase domain 95
(Trans)glycosidases Glycosyl hydrolase domain 86
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 72
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 73
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 64
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Beta-D-glucan exohydrolase, C-terminal domain (Trans)glycosidases 52
Galactose-binding domain-like (Trans)glycosidases 54
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 52
Homeodomain-like Ribonuclease H-like 42
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 44
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 42
"Winged helix" DNA-binding domain Actin-like ATPase domain 44
HAD-like Calcium ATPase, transmembrane domain M 43
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 43
Calcium ATPase, transduction domain A HAD-like 43
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 43
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 42
Translation proteins EF-G C-terminal domain-like 43
PreATP-grasp domain Rudiment single hybrid motif 42
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
L30e-like alpha/beta knot 32
GroES-like NAD(P)-binding Rossmann-fold domains 31
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 31
Glycosyl hydrolase domain E set domains 33
(Trans)glycosidases E set domains 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 32
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Homeodomain-like Homeodomain-like 32
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 31
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 32
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 32
(Trans)glycosidases Class I glutamine amidotransferase-like 31
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
RmlC-like cupins Homeodomain-like 22
Translation proteins Ribosomal protein S5 domain 2-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Galactose-binding domain-like Galactose mutarotase-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Nucleic acid-binding proteins Nucleic acid-binding proteins 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
(Trans)glycosidases Galactose mutarotase-like 21
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 21
PLP-binding barrel Alanine racemase C-terminal domain-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
PurM N-terminal domain-like PurM C-terminal domain-like 22
HD-domain/PDEase-like Nucleotidyltransferase 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
ACT-like ACT-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Restriction endonuclease-like Restriction endonuclease-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleic acid-binding proteins RuvA domain 2-like 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
"Winged helix" DNA-binding domain GAF domain-like 22
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Class II aaRS and biotin synthetases GAD domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Trigger factor ribosome-binding domain FKBP-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
YjeF N-terminal domain-like Ribokinase-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Thioredoxin-like TPR-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Protein kinase-like (PK-like) Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Resolvase-like Homeodomain-like 11
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Glycosyl hydrolase domain Starch-binding domain-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
ALDH-like Dehydroquinate synthase-like 11
PGBD-like (Trans)glycosidases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Translation proteins ThrRS/AlaRS common domain 11
Periplasmic binding protein-like II ACT-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nudix "Winged helix" DNA-binding domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Translation proteins Translation proteins 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Clc chloride channel TrkA C-terminal domain-like 11
Putative DNA-binding domain Probable bacterial effector-binding domain 11
Calcium ATPase, transduction domain A Ferritin-like 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Thioesterase/thiol ester dehydrase-isomerase Thiolase-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
RNase III domain-like dsRNA-binding domain-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Galactose-binding domain-like SGNH hydrolase 11
CarD-like TRCF domain-like 11
ApbE-like ApbE-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
GroEL equatorial domain-like GroEL apical domain-like 11
E set domains E set domains 11
Nucleotidyltransferase Nucleotidyltransferase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
"Winged helix" DNA-binding domain HRDC-like 11
(Trans)glycosidases (Trans)glycosidases 11
PIN domain-like Ribonuclease H-like 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PreATP-grasp domain Single hybrid motif 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Ribulose-phoshate binding barrel Tryptophan synthase beta subunit-like PLP-dependent enzymes 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Ribosomal protein L6 Ribosomal protein L6 11
Metal cation-transporting ATPase, ATP-binding domain N Ferritin-like 11
TGS-like ACT-like 11
Cupredoxins Calcium ATPase, transmembrane domain M 11
NAD(P)-binding Rossmann-fold domains Thiolase-like 11
ABC transporter transmembrane region ABC transporter transmembrane region 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Carbamate kinase-like PUA domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like Thiolase-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
RuvA domain 2-like BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
Nucleic acid-binding proteins BRCT domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Homeodomain-like SIS domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
UROD/MetE-like UROD/MetE-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
HAD-like Ferritin-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Nucleotidyltransferase ACT-like 11
SacY-like RNA-binding domain PTS-regulatory domain, PRD 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Cysteine proteinases Lysozyme-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
FKBP-like Triger factor/SurA peptide-binding domain-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Trypsin-like serine proteases PDZ domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
HIT-like HIT-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
FabD/lysophospholipase-like Inosine monophosphate dehydrogenase (IMPDH) 11
Zinc beta-ribbon DNA primase core 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
lambda repressor-like DNA-binding domains lambda repressor-like DNA-binding domains 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
PLP-binding barrel PLP-binding barrel 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Inosine monophosphate dehydrogenase (IMPDH) NAD(P)-binding Rossmann-fold domains 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Tetrahydrobiopterin biosynthesis enzymes-like 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Formyltransferase FMT C-terminal domain-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Periplasmic binding protein-like II MetI-like 11
Nucleotidyltransferase TGS-like 11
ITPase-like Nudix 11
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 11
Nucleotide-binding domain Nucleotide-binding domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Glucose permease domain IIB Duplicated hybrid motif 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like Thioesterase/thiol ester dehydrase-isomerase 11
Thioesterase/thiol ester dehydrase-isomerase NAD(P)-binding Rossmann-fold domains 11
MalF N-terminal region-like MetI-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
ClpP/crotonase ClpP/crotonase 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
Nucleic acid-binding proteins GAD domain-like 11
PHP14-like Phospholipase D/nuclease 11
Nucleic acid-binding proteins PheT/TilS domain 11
alpha/beta knot alpha/beta knot 11
Rudiment single hybrid motif Single hybrid motif 11
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like HRDC-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Nudix Phosphoglycerate mutase-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Cupredoxins Metal cation-transporting ATPase, ATP-binding domain N 11
PheT/TilS domain Putative DNA-binding domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
(Trans)glycosidases Starch-binding domain-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Cupredoxins HAD-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Aldolase post-HMGL domain-like 11
Periplasmic binding protein-like II GlnB-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
HD-domain/PDEase-like ACT-like 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
cAMP-binding domain-like "Winged helix" DNA-binding domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
ITPase-like ITPase-like 11
PIN domain-like DNA/RNA polymerases 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Calcium ATPase, transmembrane domain M Ferritin-like 11
Inosine monophosphate dehydrogenase (IMPDH) Thioesterase/thiol ester dehydrase-isomerase 11
RmlC-like cupins NAD(P)-binding Rossmann-fold domains 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
lambda repressor-like DNA-binding domains S-adenosyl-L-methionine-dependent methyltransferases 11
Ribonuclease H-like DNA/RNA polymerases 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Thiolase-like Thiolase-like 11
Inosine monophosphate dehydrogenase (IMPDH) Thiolase-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
P-loop containing nucleoside triphosphate hydrolases Dehydroquinate synthase-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
HD-domain/PDEase-like TGS-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Galactose-binding domain-like Galactose-binding domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Translation proteins PRC-barrel domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PPK N-terminal domain-like PHP14-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Starch-binding domain-like E set domains 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
MFS general substrate transporter CBS-domain pair 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Cupredoxins Calcium ATPase, transduction domain A 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Homeodomain-like TrpR-like 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Cupredoxins Ferritin-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
DNA clamp DNA clamp 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
GroEL-intermediate domain like GroEL apical domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
lambda repressor-like DNA-binding domains PLP-dependent transferases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
PUA domain-like alpha/beta knot 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Starch-binding domain-like Starch-binding domain-like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]