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Domain combination pairs in Leptospirillum ferrooxidans C2-3

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

509 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2112
PYP-like sensor domain (PAS domain) Nucleotide cyclase 2019
Nucleotide cyclase EAL domain-like 1616
GAF domain-like Nucleotide cyclase 1615
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1615
PYP-like sensor domain (PAS domain) EAL domain-like 1313
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1310
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 135
GAF domain-like PYP-like sensor domain (PAS domain) 1111
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 115
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 113
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 115
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 115
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 115
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 115
Actin-like ATPase domain Actin-like ATPase domain 93
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 94
GAF domain-like EAL domain-like 99
GAF domain-like GAF domain-like 99
TPR-like TPR-like 85
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 83
P-loop containing nucleoside triphosphate hydrolases Translation proteins 75
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 64
Cytochrome c Cytochrome c 64
CheY-like P-loop containing nucleoside triphosphate hydrolases 61
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 64
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
CheY-like Homeodomain-like 61
GroES-like NAD(P)-binding Rossmann-fold domains 61
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 51
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 52
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 53
CheY-like C-terminal effector domain of the bipartite response regulators 51
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 54
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 53
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 44
Calcium ATPase, transduction domain A HAD-like 43
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 43
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 43
HAD-like Calcium ATPase, transmembrane domain M 43
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
PurM N-terminal domain-like PurM C-terminal domain-like 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 43
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 44
Nqo1 middle domain-like Nqo1C-terminal domain-like 44
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 43
Translation proteins EF-G C-terminal domain-like 43
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Globin-like PYP-like sensor domain (PAS domain) 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 32
Triger factor/SurA peptide-binding domain-like FKBP-like 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
alpha-helical ferredoxin Nucleotide-binding domain 33
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 31
Thioredoxin-like Nqo1 middle domain-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
PreATP-grasp domain Rudiment single hybrid motif 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Thioredoxin-like Nqo1C-terminal domain-like 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 31
Thioredoxin-like Nqo1 FMN-binding domain-like 33
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 32
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 33
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Alpha-L RNA-binding motif Pseudouridine synthase 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
HCP-like Caspase-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
RNase III domain-like dsRNA-binding domain-like 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Lysozyme-like beta-lactamase/transpeptidase-like 22
CBS-domain pair Nucleotide cyclase 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 22
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
CheY-like HD-domain/PDEase-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
CBS-domain pair EAL domain-like 22
TPR-like Nucleotide cyclase 22
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Pentapeptide repeat-like Pentapeptide repeat-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 22
PLP-binding barrel Alanine racemase C-terminal domain-like 21
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
ACT-like ACT-like 22
DNA methylase specificity domain DNA methylase specificity domain 22
Globin-like Nucleotide cyclase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 22
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 21
Homodimeric domain of signal transducing histidine kinase CheY-like 22
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
CheC-like Surface presentation of antigens (SPOA) 21
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 21
(Trans)glycosidases Glycosyl hydrolase domain 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
GAF domain-like CheY-like 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
TPR-like P-loop containing nucleoside triphosphate hydrolases 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
GspK insert domain-like PsbU/PolX domain-like 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
HIT-like HIT-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
GAF domain-like Globin-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Nucleotidylyl transferase tRNA-binding arm 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Thioredoxin-like 4Fe-4S ferredoxins 11
HAMP domain-like Nucleotide cyclase 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Cna protein B-type domain Cna protein B-type domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
MFS general substrate transporter MFS general substrate transporter 11
LysM domain LysM domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
GatB/YqeY motif GatB/YqeY motif 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
GAF domain-like Homeodomain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
Bacterial muramidases Lysozyme-like 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
Serine metabolism enzymes domain ACT-like 11
ACT-like Formyltransferase 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
HD-domain/PDEase-like ACT-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Cytochrome c Multiheme cytochromes 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Galactose oxidase, central domain Galactose oxidase, central domain 11
Nucleic acid-binding proteins GAD domain-like 11
HD-domain/PDEase-like TGS-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
YrdC/RibB RibA-like 11
Tetrapyrrole methylase HemD-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
HMA, heavy metal-associated domain HAD-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
PDZ domain-like Radical SAM enzymes 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
tRNA-binding arm Class II aaRS and biotin synthetases 11
Nqo1 FMN-binding domain-like Nucleotide-binding domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Nqo5-like HydB/Nqo4-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Nucleotide-binding domain Nucleotide-binding domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
CheY-like Nucleotide cyclase 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like Nucleotidylyl transferase 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Thioredoxin-like Six-hairpin glycosidases 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nqo1 middle domain-like 4Fe-4S ferredoxins 11
Trypsin-like serine proteases PDZ domain-like 11
Acetyl-CoA synthetase-like ACP-like 11
EAL domain-like Sensory domain-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Cna protein B-type domain Porins 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Chorismate mutase II Periplasmic binding protein-like II 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Carbamate kinase-like ACT-like 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide cyclase 11
UDP-Glycosyltransferase/glycogen phosphorylase Glycoside hydrolase/deacetylase 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Nqo1 middle domain-like Nucleotide-binding domain 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Class II aaRS and biotin synthetases Translation proteins 11
TGS-like ACT-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
dUTPase-like dUTPase-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Translation proteins ThrRS/AlaRS common domain 11
TPR-like Roadblock/LC7 domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleotidyltransferase DNA methylase specificity domain 11
YajQ-like YajQ-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
alpha-helical ferredoxin alpha-helical ferredoxin 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
RmlC-like cupins RmlC-like cupins 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
E set domains (Trans)glycosidases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
PDZ domain-like ClpP/crotonase 11
Carbamate kinase-like PUA domain-like 11
Chorismate mutase II ACT-like 11
Periplasmic binding protein-like II ACT-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
EAL domain-like HD-domain/PDEase-like 11
Sec-C motif TPR-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
CheY-like PYP-like sensor domain (PAS domain) 11
Starch-binding domain-like Starch-binding domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain EAL domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Barwin-like endoglucanases Sporulation related repeat 11
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PIN domain-like DNA/RNA polymerases 11
Glutathione synthetase ATP-binding domain-like Phosphotyrosine protein phosphatases I 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
CheW-like CheY-like 11
Globin-like EAL domain-like 11
Formyltransferase FMT C-terminal domain-like 11
Nucleotidyltransferase ACT-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Globin-like Homodimeric domain of signal transducing histidine kinase 11
PreATP-grasp domain PreATP-grasp domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
Acetyl-CoA synthetase-like Glycerol-3-phosphate (1)-acyltransferase 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Nucleotidyltransferase TGS-like 11
Nqo1 middle domain-like alpha-helical ferredoxin 11
Macro domain-like Zn-dependent exopeptidases 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Pseudouridine synthase PUA domain-like 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Zinc beta-ribbon DNA primase core 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
HisI-like all-alpha NTP pyrophosphatases 11
Methylesterase CheB, C-terminal domain Nucleotide cyclase 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
CBS-domain pair GAF domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nqo1C-terminal domain-like alpha-helical ferredoxin 11
UDP-Glycosyltransferase/glycogen phosphorylase TPR-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
YjeF N-terminal domain-like Ribokinase-like 11
PDZ domain-like PDZ domain-like 11
NTF2-like P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
DNA-glycosylase Nudix 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Phage tail proteins Phage tail proteins 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide cyclase Nucleotide cyclase 11
Homeodomain-like Homeodomain-like 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
HCP-like HCP-like 11
Oxidoreductase molybdopterin-binding domain GlnB-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
CheY-like EAL domain-like 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Transmembrane di-heme cytochromes Cytochrome c 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains HlyD-like secretion proteins 11
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Methylesterase CheB, C-terminal domain EAL domain-like 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Clc chloride channel CBS-domain pair 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
lambda repressor-like DNA-binding domains Metallo-hydrolase/oxidoreductase 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Thiolase-like Thiolase-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Origin of replication-binding domain, RBD-like P-loop containing nucleoside triphosphate hydrolases 11
Lysozyme-like LysM domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nqo1C-terminal domain-like Nucleotide-binding domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
ClpP/crotonase NfeD domain-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
CheY-like CheY-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
"Winged helix" DNA-binding domain GAF domain-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
MetI-like MetI-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
CarD-like TRCF domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
Nqo1 FMN-binding domain-like 4Fe-4S ferredoxins 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Nucleotide cyclase 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases EAL domain-like 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Phage tail proteins gp5 N-terminal domain-like 11
DNA clamp DNA clamp 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
UDP-Glycosyltransferase/glycogen phosphorylase S-adenosyl-L-methionine-dependent methyltransferases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like Nucleotide-binding domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Multidrug efflux transporter AcrB transmembrane domain HlyD-like secretion proteins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
FliG FliG 11
Translation proteins Translation proteins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Globin-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Thioredoxin-like alpha-helical ferredoxin 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains HlyD-like secretion proteins 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
Nqo1C-terminal domain-like 4Fe-4S ferredoxins 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11

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