Domain combination pairs in Mycoplasma pneumoniae 309

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

176 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N)	Superfamily (C)	Number of occurrances	Number unique
P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	8	6
DNA methylase specificity domain	DNA methylase specificity domain	6	1
Nucleotidylyl transferase	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	6	5
MPN010-like	MPN010-like	6	4
Nucleic acid-binding proteins	Class II aaRS and biotin synthetases	4	3
Class II aaRS and biotin synthetases	Class II aaRS ABD-related	4	3
P-loop containing nucleoside triphosphate hydrolases	Translation proteins	4	4
ValRS/IleRS/LeuRS editing domain	Nucleotidylyl transferase	3	3
ValRS/IleRS/LeuRS editing domain	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	3	3
ABC transporter transmembrane region	P-loop containing nucleoside triphosphate hydrolases	3	2
Actin-like ATPase domain	Actin-like ATPase domain	3	2
P-loop containing nucleoside triphosphate hydrolases	EF-G C-terminal domain-like	2	2
Thiamin diphosphate-binding fold (THDP-binding)	TK C-terminal domain-like	2	2
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	Ribosomal protein S5 domain 2-like	2	1
Translation proteins	EF-G C-terminal domain-like	2	2
N-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	2	1
Translation proteins SH3-like domain	Nucleic acid-binding proteins	2	2
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	Type II DNA topoisomerase	2	1
P-loop containing nucleoside triphosphate hydrolases	MOP-like	2	1
Ribosomal protein S5 domain 2-like	Type II DNA topoisomerase	2	1
ThrRS/AlaRS common domain	Class II aaRS and biotin synthetases	2	2
P-loop containing nucleoside triphosphate hydrolases	Ribosomal protein S5 domain 2-like	2	2
P-loop containing nucleoside triphosphate hydrolases	C-terminal domain of alpha and beta subunits of F1 ATP synthase	2	1
MetI-like	MetI-like	2	2
Nucleic acid-binding proteins	Nucleic acid-binding proteins	2	2
Domain of the SRP/SRP receptor G-proteins	P-loop containing nucleoside triphosphate hydrolases	2	2
Type II DNA topoisomerase	GyrA/ParC C-terminal domain-like	2	1
EF-G C-terminal domain-like	EF-G C-terminal domain-like	2	2
N-terminal domain of alpha and beta subunits of F1 ATP synthase	P-loop containing nucleoside triphosphate hydrolases	2	1
FAD/NAD(P)-binding domain	FAD/NAD-linked reductases, dimerisation (C-terminal) domain	2	1
Nucleic acid-binding proteins	Prokaryotic type KH domain (KH-domain type II)	1	1
Aminoacid dehydrogenase-like, N-terminal domain	NAD(P)-binding Rossmann-fold domains	1	1
GIY-YIG endonuclease	RuvA domain 2-like	1	1
S-adenosyl-L-methionine-dependent methyltransferases	YrdC/RibB	1	1
MgtE N-terminal domain-like	DNA methylase specificity domain	1	1
Folate-binding domain	TrmE connector domain	1	1
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Translation proteins	1	1
Ribosomal protein L7/12, oligomerisation (N-terminal) domain	ClpS-like	1	1
EF-G C-terminal domain-like	Ribosomal protein S5 domain 2-like	1	1
Glutamine synthetase/guanido kinase	GatB/YqeY motif	1	1
Trigger factor ribosome-binding domain	Triger factor/SurA peptide-binding domain-like	1	1
Prokaryotic type I DNA topoisomerase	Zinc beta-ribbon	1	1
S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	1	1
Calcium ATPase, transduction domain A	HAD-like	1	1
Nucleotidylyl transferase	HD-domain/PDEase-like	1	1
MPN010-like	Tropomyosin	1	1
Zinc beta-ribbon	Zinc beta-ribbon	1	1
GroEL equatorial domain-like	GroEL-intermediate domain like	1	1
Coiled-coil domain of nucleotide exchange factor GrpE	Head domain of nucleotide exchange factor GrpE	1	1
Prokaryotic type KH domain (KH-domain type II)	Prokaryotic type KH domain (KH-domain type II)	1	1
P-loop containing nucleoside triphosphate hydrolases	Smc hinge domain	1	1
Sigma2 domain of RNA polymerase sigma factors	Sigma3 and sigma4 domains of RNA polymerase sigma factors	1	1
"Winged helix" DNA-binding domain	"Winged helix" DNA-binding domain	1	1
P-loop containing nucleoside triphosphate hydrolases	Helical scaffold and wing domains of SecA	1	1
Chaperone J-domain	DnaJ/Hsp40 cysteine-rich domain	1	1
RuvA domain 2-like	BRCT domain	1	1
N-terminal domain of MutM-like DNA repair proteins	Glucocorticoid receptor-like (DNA-binding domain)	1	1
Nucleic acid-binding proteins	BRCT domain	1	1
Formyltransferase	FMT C-terminal domain-like	1	1
Class II aaRS and biotin synthetases	C-terminal domain of ProRS	1	1
Single hybrid motif	CoA-dependent acyltransferases	1	1
Phoshotransferase/anion transport protein	PTS system IIB component-like	1	1
Nucleotidylyl transferase	An anticodon-binding domain of class I aminoacyl-tRNA synthetases	1	1
THUMP domain-like	Adenine nucleotide alpha hydrolases-like	1	1
Chaperone J-domain	HSP40/DnaJ peptide-binding domain	1	1
Ribosomal L11/L12e N-terminal domain	Ribosomal protein L11, C-terminal domain	1	1
Nucleic acid-binding proteins	PheT/TilS domain	1	1
HSP40/DnaJ peptide-binding domain	HSP40/DnaJ peptide-binding domain	1	1
DNA clamp	DNA clamp	1	1
Creatinase/prolidase N-terminal domain	Creatinase/aminopeptidase	1	1
dsRNA-binding domain-like	Ribosomal protein S5 domain 2-like	1	1
N-terminal domain of MutM-like DNA repair proteins	S13-like H2TH domain	1	1
FKBP-like	Triger factor/SurA peptide-binding domain-like	1	1
Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains	1	1
tRNA-binding arm	Class II aaRS and biotin synthetases	1	1
Nucleic acid-binding proteins	Putative DNA-binding domain	1	1
Glucose permease domain IIB	Duplicated hybrid motif	1	1
Translation proteins	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	1	1
PUA domain-like	P-loop containing nucleoside triphosphate hydrolases	1	1
Class II aaRS and biotin synthetases	SufE/NifU	1	1
PK beta-barrel domain-like	Phosphoenolpyruvate/pyruvate domain	1	1
Translation initiation factor IF3, N-terminal domain	Translation initiation factor IF3, C-terminal domain	1	1
P-loop containing nucleoside triphosphate hydrolases	Initiation factor IF2/eIF5b, domain 3	1	1
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain	Alkaline phosphatase-like	1	1
DNA/RNA polymerases	Lesion bypass DNA polymerase (Y-family), little finger domain	1	1
Domain of the SRP/SRP receptor G-proteins	Signal peptide-binding domain	1	1
Translation proteins	ThrRS/AlaRS common domain	1	1
Phosphohistidine domain	Phosphoenolpyruvate/pyruvate domain	1	1
P-loop containing nucleoside triphosphate hydrolases	TGS-like	1	1
Nucleotidylyl transferase	tRNA-binding arm	1	1
P-loop containing nucleoside triphosphate hydrolases	Prokaryotic type KH domain (KH-domain type II)	1	1
Class II aaRS and biotin synthetases	GAD domain-like	1	1
PUA domain-like	Ribosomal protein S5 domain 2-like	1	1
Enolase N-terminal domain-like	Enolase C-terminal domain-like	1	1
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain	Phosphohistidine domain	1	1
UBA-like	Elongation factor Ts (EF-Ts), dimerisation domain	1	1
L30e-like	alpha/beta knot	1	1
DNA ligase/mRNA capping enzyme, catalytic domain	Nucleic acid-binding proteins	1	1
Nucleic acid-binding proteins	RuvA domain 2-like	1	1
DNA ligase/mRNA capping enzyme, catalytic domain	BRCT domain	1	1
PIN domain-like	5' to 3' exonuclease, C-terminal subdomain	1	1
HprK N-terminal domain-like	PEP carboxykinase-like	1	1
Putative DNA-binding domain	Class II aaRS and biotin synthetases	1	1
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	tRNA-binding arm	1	1
P-loop containing nucleoside triphosphate hydrolases	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	1	1
Phosphoenolpyruvate/pyruvate domain	PK C-terminal domain-like	1	1
Phosphoglucomutase, first 3 domains	Phosphoglucomutase, C-terminal domain	1	1
Nucleic acid-binding proteins	GAD domain-like	1	1
GroEL equatorial domain-like	GroEL apical domain-like	1	1
NAD(P)-binding Rossmann-fold domains	LDH C-terminal domain-like	1	1
P-loop containing nucleoside triphosphate hydrolases	Obg GTP-binding protein C-terminal domain	1	1
RBP11-like subunits of RNA polymerase	C-terminal domain of RNA polymerase alpha subunit	1	1
ValRS/IleRS/LeuRS editing domain	tRNA-binding arm	1	1
Insert subdomain of RNA polymerase alpha subunit	RBP11-like subunits of RNA polymerase	1	1
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain	Pyrimidine nucleoside phosphorylase C-terminal domain	1	1
Zinc beta-ribbon	DNA primase core	1	1
DnaJ/Hsp40 cysteine-rich domain	HSP40/DnaJ peptide-binding domain	1	1
HD-domain/PDEase-like	Nucleotidyltransferase	1	1
P-loop containing nucleoside triphosphate hydrolases	Signal peptide-binding domain	1	1
FAD/NAD(P)-binding domain	FAD-linked reductases, C-terminal domain	1	1
S13-like H2TH domain	Glucocorticoid receptor-like (DNA-binding domain)	1	1
P-loop containing nucleoside triphosphate hydrolases	FtsH protease domain-like	1	1
P-loop containing nucleoside triphosphate hydrolases	TrpR-like	1	1
Elongation factor Ts (EF-Ts), dimerisation domain	Elongation factor Ts (EF-Ts), dimerisation domain	1	1
P-loop containing nucleoside triphosphate hydrolases	RecA protein, C-terminal domain	1	1
Translation proteins	Ribosomal protein S5 domain 2-like	1	1
Ribosomal protein L6	Ribosomal protein L6	1	1
HAD-like	Calcium ATPase, transmembrane domain M	1	1
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain	Phosphoenolpyruvate/pyruvate domain	1	1
P-loop containing nucleoside triphosphate hydrolases	Microbial and mitochondrial ADK, insert "zinc finger" domain	1	1
Trigger factor ribosome-binding domain	FKBP-like	1	1
Nucleotidylyl transferase	Alpha-L RNA-binding motif	1	1
Sigma3 and sigma4 domains of RNA polymerase sigma factors	Sigma3 and sigma4 domains of RNA polymerase sigma factors	1	1
GreA transcript cleavage protein, N-terminal domain	FKBP-like	1	1
ThrRS/AlaRS common domain	Class II aaRS ABD-related	1	1
Insert subdomain of RNA polymerase alpha subunit	C-terminal domain of RNA polymerase alpha subunit	1	1
Calcium ATPase, transduction domain A	Calcium ATPase, transmembrane domain M	1	1
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	1	1
Class II aaRS ABD-related	C-terminal domain of ProRS	1	1
Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	1	1
NAD(P)-binding Rossmann-fold domains	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	1	1
GroEL-intermediate domain like	GroEL apical domain-like	1	1
Class II aaRS and biotin synthetases	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	1	1
PheT/TilS domain	Class II aaRS and biotin synthetases	1	1
TrmE connector domain	P-loop containing nucleoside triphosphate hydrolases	1	1
PK beta-barrel domain-like	PK C-terminal domain-like	1	1
"Winged helix" DNA-binding domain	GAF domain-like	1	1
NAD(P)-binding Rossmann-fold domains	TrkA C-terminal domain-like	1	1
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	ThrRS/AlaRS common domain	1	1
DNA ligase/mRNA capping enzyme, catalytic domain	RuvA domain 2-like	1	1
Transcription factor NusA, N-terminal domain	Nucleic acid-binding proteins	1	1
P-loop containing nucleoside triphosphate hydrolases	Pre-protein crosslinking domain of SecA	1	1
Folate-binding domain	P-loop containing nucleoside triphosphate hydrolases	1	1
L9 N-domain-like	Ribosomal protein L9 C-domain	1	1
Translation proteins	Translation proteins	1	1
R1 subunit of ribonucleotide reductase, N-terminal domain	PFL-like glycyl radical enzymes	1	1
Actin-like ATPase domain	Heat shock protein 70kD (HSP70), peptide-binding domain	1	1
Obg GTP-binding protein N-terminal domain	P-loop containing nucleoside triphosphate hydrolases	1	1
Transcription factor NusA, N-terminal domain	Prokaryotic type KH domain (KH-domain type II)	1	1
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Pyrimidine nucleoside phosphorylase C-terminal domain	1	1
S-adenosyl-L-methionine-dependent methyltransferases	Putative methyltransferase TM0872, insert domain	1	1
Nucleotidylyl transferase	Riboflavin kinase-like	1	1
PheT/TilS domain	Putative DNA-binding domain	1	1
Obg GTP-binding protein N-terminal domain	Obg GTP-binding protein C-terminal domain	1	1
Prokaryotic type KH domain (KH-domain type II)	Ribosomal protein S3 C-terminal domain	1	1
P-loop containing nucleoside triphosphate hydrolases	C-terminal UvrC-binding domain of UvrB	1	1
Class II aaRS and biotin synthetases	Translation proteins	1	1
P-loop containing nucleoside triphosphate hydrolases	Glucocorticoid receptor-like (DNA-binding domain)	1	1
Pre-protein crosslinking domain of SecA	Helical scaffold and wing domains of SecA	1	1
NAD(P)-binding Rossmann-fold domains	6-phosphogluconate dehydrogenase C-terminal domain-like	1	1
Alpha-L RNA-binding motif	Pseudouridine synthase	1	1
P-loop containing nucleoside triphosphate hydrolases	"Winged helix" DNA-binding domain	1	1
Ribonuclease H-like	AF1531-like	1	1
CoA-dependent acyltransferases	CoA-dependent acyltransferases	1	1
Translation proteins	Initiation factor IF2/eIF5b, domain 3	1	1
Nucleotide-binding domain	FAD-linked reductases, C-terminal domain	1	1

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